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This repository has been archived by the owner on Nov 8, 2019. It is now read-only.
If there's a reason for having multiple prefixes (I have also seen duplicated prefixes, e.g. HP:HP:0000089, which I assumed to be a mistake) then please explain.
Also, when I try querying on that first identifier I get an error:
Traceback (most recent call last):
File "/home/ubuntu/opt/devpy3/lib/python3.5/site-packages/tornado/web.py", line 1509, in _execute
result = method(*self.path_args, **self.path_kwargs)
File "/home/ubuntu/opt/biothings_explorer_web/src/handlers/entitycrawler.py", line 308, in get
results = exploreinput(input_type, input_value)
File "/home/ubuntu/opt/biothings_explorer_web/src/handlers/entitycrawler.py", line 160, in exploreinput
synonyms = IDConverter().find_synonym(input_value, input_type)
File "/home/ubuntu/opt/biothings_explorer_web/src/biothings_explorer/id_converter.py", line 89, in find_synonym
return self.find_disease_synonym(input_value, input_type)
File "/home/ubuntu/opt/biothings_explorer_web/src/biothings_explorer/id_converter.py", line 176, in find_disease_synonym
params = self.mydisease_params_template.replace('{input_value}', str(input_value)).replace('{input_type}', MYDISEASE_URI2SCOPE[input_type])
KeyError: 'mesh.disease'
But mesh.disease should be a valid prefix to use.
The text was updated successfully, but these errors were encountered:
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This endpoint returns some odd data entries: http://biothings.io/explorer/api/v2/crawler?input_type=mondo&input_value=0018911
These identifiers (all belonging to EquivalantAssociations) look like errors:
"MESH.DISEASE:ICD10CM:E11.8",
"MESH.DISEASE:KEGG:04950",
"MESH.DISEASE:OMIM:606391",
"MESH.DISEASE:ORDO:552"
If there's a reason for having multiple prefixes (I have also seen duplicated prefixes, e.g. HP:HP:0000089, which I assumed to be a mistake) then please explain.
Also, when I try querying on that first identifier I get an error:
http://biothings.io/explorer/api/v2/crawler?input_type=mesh.disease&input_value=ICD10CM:E11.8
But mesh.disease should be a valid prefix to use.
The text was updated successfully, but these errors were encountered: