locuscompare #26
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solved, never mind. |
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Hi
I am having two dataset , as below
eqtl_fn <- read.table(file="XXXXX/Artery_Coronary_v7_eQTL_PHACTR1.txt", header=T, as.is=T)
head(eqtl_fn)
gwas_fn <- read.table(file="XXXXX/CAD_GWAS.txt", header=T, as.is=T)
head(gwas_fn)
locuscompare(in_fn1=gwas_fn, in_fn2=eqtl_fn, title1="CAD GWAS", title2="Coronary Artery eQTL",
marker_col1= gwas_fn$rsnum, pval_col1=gwas_fn$pvalue, marker_col2=eqtl_fn$rsnum, pval_col2=eqtl_fn$pval_nominal)
keep having this error
Error in
[.data.frame(d, , c("rsid", "pval", "logp")) :undefined columns selected
your advise is appreciated.
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