diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt b/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt new file mode 100644 index 0000000..5fb7bf1 --- /dev/null +++ b/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt @@ -0,0 +1,28 @@ +# ANCILLARY.txt +# +# This optional comma-separated data file provides information about ancillary +# site-level measurements. Entries below are all optional and include: +# LAI: leaf area index (m2/m2) +# NPP: total NPP (gC/m2/yr) +# ANPP: aboveground NPP (gC/m2/yr) +# BNPP: belowground NPP (gC/m2/yr) +# AGE: age since disturbance (years) +# BD: soil bulk density (g cm−3) +# STC: total soil carbon (%) +# STN: total soil nitrogen (%) +# MAP: mean annual precipitation (mm) +# MAT: mean annual temperature (C) +# NH4: ammonium (mg kg−1 soil) +# NO3: nitrate (mg kg−1 soil) +# PH +# Sand (%) +# Silt (%) +# Clay (%) +# ... others can be added as needed +# +Variable, Value +CSR_LAI +CSR_NPP +CSR_ANPP +CSR_BNPP +CSR_AGE diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt new file mode 100644 index 0000000..e2fb29c --- /dev/null +++ b/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt @@ -0,0 +1,23 @@ +# COLUMNS.txt +# +# This comma-separated data file maps columns from this dataset to +# standardized column names in the main database. Entries below include: +# Database: name of the standardized database column +# Dataset: name of the column in this dataset +# Computation: optional R-parseable computation to change units, etc. +# Notes: optional; generally to explain the computation +# +Database, Dataset, Computation, Notes +CSR_CDRY, Cdry, +CSR_COMMENTS, Comments, +CSR_ERROR, Error, +CSR_FLUX, Flux, +CSR_LABEL, Label, +CSR_PORT, Port, +CSR_R2, R2, +CSR_RECORD, Record, +CSR_RH, RH, +CSR_SM5, V4 +CSR_T5, V3 +CSR_TCHAMBER, Tcham +CSR_TIMESTAMP, Timestamp diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt new file mode 100644 index 0000000..f6b5a15 --- /dev/null +++ b/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt @@ -0,0 +1,14 @@ +# CONTRIBUTORS.txt +# +# This comma-separated data file provides information about dataset +# contributors. Entries below include: +# CSR_FIRST_NAME: first name +# CSR_FAMILY_NAME: family (last) name +# CSR_EMAIL: email address +# CSR_ORCID: optional CSR_ORCID ID (see https://orcid.org) +# CSR_ROLE: optional CRediT role (see https://www.casrai.org/credit.html) +# common roles include "Funding acquisition", "Investigation", "Data curation" +# +CSR_FIRST_NAME, CSR_FAMILY_NAME, CSR_EMAIL, CSR_ORCID, CSR_ROLE +Marta, Galvagno, m.galvagno@arpa.vda.it, 0000-0002-0827-487X, +Edoardo, Cremonese, e.cremonese@arpa.vda.it diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt b/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt new file mode 100644 index 0000000..cf4d96b --- /dev/null +++ b/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt @@ -0,0 +1,45 @@ +# DESCRIPTION.txt +# +# This key-value data file holds the minimal metadata for each dataset. +# Most entries be filled out for each dataset. Entries below include: +# CSR_SITE_NAME: standard site name +# CSR_LONGITUDE: decimal degrees; positive = east, negative = west +# CSR_LATITUDE: decimal degrees; positive = north, negative = south +# CSR_ELEVATION: elevation above sea level, meters +# CSR_TIMEZONE: see https://en.wikipedia.org/wiki/List_of_tz_database_time_zones +# For US sites, a corresponding Central American timezone is used if +# the instrument does not follow daylight savings +# CSR_IGBP: CSR_IGBP land cover type. Common types include: +# Evergreen needleleaf forest, Evergreen broadleaf forest, +# Deciduous needleleaf forest, Deciduous broadleaf forest, +# Mixed forests, Closed shrubland, Open shrubland, Woody savanna, +# Savannas, Grassland, Wetland, Cropland, Urban +# CSR_NETWORK and CSR_SITE_ID: Optional network (e.g. "Ameriflux") and site ID in network +# CSR_INSTRUMENT: e.g. "LI-8100A/LI-8150" for standard Licor setup, +# "LI-8100A" (no multiplexer), others... +# CSR_MSMT_LENGTH: measurement length (seconds) +# CSR_FILE_FORMAT: "Processed", "Processed_csv", "Custom", "LI-8100A_raw", etc. +# CSR_TIMESTAMP_FORMAT. See ?strptime, but briefly: + %d day of month; %H hour; %M minute; %m month; %S second; %Y year; %y year w/o century +# Primary publication: optional DOI (preferred) or other primary publication +# that should be cited when these data are used. Leave empty if unpublished. +# Other publications: optional comma-separated DOIs +# CSR_ACKNOWLEDGMENT: optional acknowledgment (funding or other) text +# -------------------------------------- +CSR_SITE_NAME: Torgnon grassland (IT-Tor) +CSR_LONGITUDE: 7.5781 +CSR_LATITUDE: 45.8444 +CSR_ELEVATION: 2160 +CSR_TIMEZONE: Etc/GMT-1 +CSR_IGBP: Grassland +CSR_NETWORK: Fluxnet, ICOS +CSR_SITE_ID: IT-Tor +CSR_INSTRUMENT: LI-8100A +CSR_MSMT_LENGTH: 150 +CSR_FILE_FORMAT: Processed +CSR_TIMESTAMP_FORMAT: %Y-%m-%dT%H:%M:%SZ +CSR_TIMESTAMP_TZ: Etc/GMT-1 +CSR_PRIMARY_PUB:10.1088/1748-9326/8/2/025008 +CSR_OTHER_PUBS: +CSR_DATA_URL: +CSR_ACKNOWLEDGMENT: diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt new file mode 100644 index 0000000..5c8d2ea --- /dev/null +++ b/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt @@ -0,0 +1,15 @@ +# PORTS.txt +# +# This comma-separated data file provides information about multiplexer ports +# and what conditions they represent. Entries below include: +# +# CSR_PORT: CSR_PORT number, numeric; "0" means all ports [req] +# CSR_MSMT_VAR: measurement variable: "Rs", "Rh", or "NEE" [req] +# CSR_TREATMENT: "None" or experimental manipulation [req] +# CSR_AREA: optional chamber area, cm2 +# CSR_DEPTH: optional collar insertion depth, cm +# CSR_SPECIES: optional field describing species measured +# CSR_SENSOR_DEPTHS: optional sensor depths for gradient method +# +CSR_PORT, CSR_MSMT_VAR, CSR_TREATMENT, CSR_AREA, CSR_DEPTH, CSR_SPECIES +0, NEE, None, , , "Nardus stricta, Arnica montana, Trifolium alpinum"