From 86df50cfd1ff9f4ac2bc2f652036aa601d89d725 Mon Sep 17 00:00:00 2001
From: Ben Bond-Lamberty <bondlamberty@pnnl.gov>
Date: Tue, 3 Mar 2020 19:54:24 -0500
Subject: [PATCH] Metadata for d20200304_GALVAGNO #169

---
 .../datasets/d20200304_GALVAGNO/ANCILLARY.txt | 28 ++++++++++++
 .../datasets/d20200304_GALVAGNO/COLUMNS.txt   | 23 ++++++++++
 .../d20200304_GALVAGNO/CONTRIBUTORS.txt       | 14 ++++++
 .../d20200304_GALVAGNO/DESCRIPTION.txt        | 45 +++++++++++++++++++
 .../datasets/d20200304_GALVAGNO/PORTS.txt     | 15 +++++++
 5 files changed, 125 insertions(+)
 create mode 100644 inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt
 create mode 100644 inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt
 create mode 100644 inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt
 create mode 100644 inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt
 create mode 100644 inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt

diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt b/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt
new file mode 100644
index 0000000..5fb7bf1
--- /dev/null
+++ b/inst/extdata/datasets/d20200304_GALVAGNO/ANCILLARY.txt
@@ -0,0 +1,28 @@
+# ANCILLARY.txt
+#
+# This optional comma-separated data file provides information about ancillary
+# site-level measurements. Entries below are all optional and include: 
+# 	LAI: leaf area index (m2/m2)
+# 	NPP: total NPP (gC/m2/yr)
+# 	ANPP: aboveground NPP (gC/m2/yr)
+# 	BNPP: belowground NPP (gC/m2/yr)
+# 	AGE: age since disturbance (years)
+# 	BD: soil bulk density (g cm−3)
+# 	STC: total soil carbon (%)
+# 	STN: total soil nitrogen (%)
+#	MAP: mean annual precipitation (mm)
+#	MAT: mean annual temperature (C)
+# 	NH4: ammonium (mg kg−1 soil)
+# 	NO3: nitrate (mg kg−1 soil)
+# 	PH
+# 	Sand (%)
+# 	Silt (%)
+# 	Clay (%)
+# ... others can be added as needed
+#
+Variable,	Value
+CSR_LAI
+CSR_NPP
+CSR_ANPP
+CSR_BNPP
+CSR_AGE
diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt
new file mode 100644
index 0000000..e2fb29c
--- /dev/null
+++ b/inst/extdata/datasets/d20200304_GALVAGNO/COLUMNS.txt
@@ -0,0 +1,23 @@
+# COLUMNS.txt
+#
+# This comma-separated data file maps columns from this dataset to
+# standardized column names in the main database. Entries below include:
+# 	Database: name of the standardized database column
+#	Dataset: name of the column in this dataset
+#	Computation: optional R-parseable computation to change units, etc.
+#	Notes: optional; generally to explain the computation
+#
+Database,		Dataset,	Computation,				Notes
+CSR_CDRY,		Cdry,
+CSR_COMMENTS,	Comments,
+CSR_ERROR,		Error,
+CSR_FLUX,  		Flux,
+CSR_LABEL,		Label,
+CSR_PORT,		Port,
+CSR_R2,			R2,
+CSR_RECORD,		Record,
+CSR_RH,			RH,
+CSR_SM5,		V4
+CSR_T5,			V3
+CSR_TCHAMBER,	Tcham
+CSR_TIMESTAMP,	Timestamp
diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt
new file mode 100644
index 0000000..f6b5a15
--- /dev/null
+++ b/inst/extdata/datasets/d20200304_GALVAGNO/CONTRIBUTORS.txt
@@ -0,0 +1,14 @@
+# CONTRIBUTORS.txt
+#
+# This comma-separated data file provides information about dataset
+# contributors. Entries below include: 
+# 	CSR_FIRST_NAME: first name
+# 	CSR_FAMILY_NAME: family (last) name
+# 	CSR_EMAIL: email address
+# 	CSR_ORCID: optional CSR_ORCID ID (see https://orcid.org)
+# 	CSR_ROLE: optional CRediT role (see https://www.casrai.org/credit.html)
+#     common roles include "Funding acquisition", "Investigation", "Data curation"
+#
+CSR_FIRST_NAME,	CSR_FAMILY_NAME,	CSR_EMAIL,				CSR_ORCID,				CSR_ROLE
+Marta,			Galvagno,			m.galvagno@arpa.vda.it,	0000-0002-0827-487X,	
+Edoardo,		Cremonese,			e.cremonese@arpa.vda.it
diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt b/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt
new file mode 100644
index 0000000..cf4d96b
--- /dev/null
+++ b/inst/extdata/datasets/d20200304_GALVAGNO/DESCRIPTION.txt
@@ -0,0 +1,45 @@
+# DESCRIPTION.txt
+#
+# This key-value data file holds the minimal metadata for each dataset.
+# Most entries  be filled out for each dataset. Entries below include:
+# 	CSR_SITE_NAME: standard site name
+# 	CSR_LONGITUDE: decimal degrees; positive = east, negative = west
+# 	CSR_LATITUDE: decimal degrees; positive = north, negative = south
+# 	CSR_ELEVATION: elevation above sea level, meters
+#	CSR_TIMEZONE: see https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
+#		For US sites, a corresponding Central American timezone is used if 
+#		the instrument does not follow daylight savings 
+# 	CSR_IGBP: CSR_IGBP land cover type. Common types include:
+#		Evergreen needleleaf forest, Evergreen broadleaf forest,
+#		Deciduous needleleaf forest, Deciduous broadleaf forest,
+#		Mixed forests, Closed shrubland, Open shrubland, Woody savanna,
+#		Savannas, Grassland, Wetland, Cropland, Urban
+#	CSR_NETWORK and CSR_SITE_ID: Optional network (e.g. "Ameriflux") and site ID in network
+# 	CSR_INSTRUMENT: e.g. "LI-8100A/LI-8150" for standard Licor setup,
+#		"LI-8100A" (no multiplexer), others...
+#	CSR_MSMT_LENGTH: measurement length (seconds)
+#	CSR_FILE_FORMAT: "Processed", "Processed_csv", "Custom", "LI-8100A_raw", etc.
+#	CSR_TIMESTAMP_FORMAT. See ?strptime, but briefly:
+		%d day of month; %H hour; %M minute; %m month; %S second; %Y year; %y year w/o century
+# 	Primary publication: optional DOI (preferred) or other primary publication 
+#		that should be cited when these data are used. Leave empty if unpublished.
+# 	Other publications: optional comma-separated DOIs
+# 	CSR_ACKNOWLEDGMENT: optional acknowledgment (funding or other) text
+# --------------------------------------
+CSR_SITE_NAME: Torgnon grassland (IT-Tor)
+CSR_LONGITUDE: 7.5781
+CSR_LATITUDE: 45.8444
+CSR_ELEVATION: 2160
+CSR_TIMEZONE: Etc/GMT-1
+CSR_IGBP: Grassland
+CSR_NETWORK: Fluxnet, ICOS
+CSR_SITE_ID: IT-Tor
+CSR_INSTRUMENT: LI-8100A
+CSR_MSMT_LENGTH: 150
+CSR_FILE_FORMAT: Processed
+CSR_TIMESTAMP_FORMAT: %Y-%m-%dT%H:%M:%SZ
+CSR_TIMESTAMP_TZ: Etc/GMT-1
+CSR_PRIMARY_PUB:10.1088/1748-9326/8/2/025008
+CSR_OTHER_PUBS:
+CSR_DATA_URL:
+CSR_ACKNOWLEDGMENT: 
diff --git a/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt b/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt
new file mode 100644
index 0000000..5c8d2ea
--- /dev/null
+++ b/inst/extdata/datasets/d20200304_GALVAGNO/PORTS.txt
@@ -0,0 +1,15 @@
+# PORTS.txt
+#
+# This comma-separated data file provides information about multiplexer ports
+# and what conditions they represent. Entries below include: 
+#
+# 	CSR_PORT: CSR_PORT number, numeric; "0" means all ports [req]
+#	CSR_MSMT_VAR: measurement variable: "Rs", "Rh", or "NEE" [req]
+# 	CSR_TREATMENT: "None" or experimental manipulation [req]
+#	CSR_AREA: optional chamber area, cm2
+#	CSR_DEPTH: optional collar insertion depth, cm
+# 	CSR_SPECIES: optional field describing species measured
+#	CSR_SENSOR_DEPTHS: optional sensor depths for gradient method
+#
+CSR_PORT,	CSR_MSMT_VAR,	CSR_TREATMENT,	CSR_AREA,	CSR_DEPTH,	CSR_SPECIES
+0,			NEE,			None,			,			,			"Nardus stricta, Arnica montana, Trifolium alpinum"