diff --git a/data_pipeline/data_pipeline/datasets/ibd/ibd_variant_results.py b/data_pipeline/data_pipeline/datasets/ibd/ibd_variant_results.py index ef5d93ae..1f509eb3 100644 --- a/data_pipeline/data_pipeline/datasets/ibd/ibd_variant_results.py +++ b/data_pipeline/data_pipeline/datasets/ibd/ibd_variant_results.py @@ -10,7 +10,12 @@ def prepare_variant_results(): variants = results.group_by(results.locus, results.alleles).aggregate() # Select AC/AF numbers for the reference and alternate alleles - results = results.annotate(ac_case=results.ac_case[1], ac_ctrl=results.ac_control[1], an_case=results.ac_case[0], an_ctrl=results.ac_control[0]) + results = results.annotate( + ac_case=results.ac_case[1], + ac_ctrl=results.ac_control[1], + an_case=results.ac_case[0], + an_ctrl=results.ac_control[0], + ) # TODO: I also should do some renaming and filtering here: # the three sub-things I have coming in are lowercase, and end in -control