pyproject.toml

[build-system]
requires = ["setuptools", "Cython", "numpy"]
build-backend = "setuptools.build_meta"

[project]
name = "Hifive"
description = "Python library for normalizing, analyzing, and visualizing HiC and 5C data"
version = "2.0.0"
readme = "README.rst"
license = {file = "LICENSE.txt"}
keywords = ['hi-c', 'hic', 'five-c', '5c']
authors = [
    {name = "Michael Sauria", email = "mike.sauria@gmail.com"},
]
requires-python = ">= 3.0"
dependencies = [
    "numpy",
    "scipy",
    "h5py>=3",
    "mock",
]
classifiers = ["Programming Language :: Python :: 3"]

[project.scripts]
hifive = "hifive.scripts.hifive:main"
hifive2butlr = "hifive.scripts.hifive2butlr:main"
hifive2cooler = "hifive.scripts.hifive2cooler:main"
hifive2mcool = "hifive.scripts.hifive2mcool:main"
fetch_mrh_data = "hifive.scripts.fetch_mrh_data:main"

[project.urls]
Repository = "https://github.com/bxlab/hifive"
Documentation = "https://bxlab-hifive.readthedocs.io"
Issues = "https://github.com/bxlab/hifive/issues"

[project.optional-dependencies]
plotting = [
    "pyx",
    "PIL",
]
mpi = ["mpi4py"]
bam_loading = ["pysam"]
modeling = ["mlpy"]