forked from DiffusionMRITool/dmritool
-
Notifications
You must be signed in to change notification settings - Fork 0
/
.travis.yml
78 lines (64 loc) · 2.53 KB
/
.travis.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
language: cpp
dist: trusty
sudo: required
compiler:
- gcc
before_install:
- sudo apt-get update -qq
# - sudo apt-get install -qq libinsighttoolkit4-dev # ubuntu trusty has ITK 4.5 as default, while we need ITK >4.9
- sudo apt-get install -qq libvtk6-dev libvtk6
# - sudo apt-get install -qq cmake
- sudo apt-get install -qq gsl-bin libgsl0-dev
- sudo apt-get install -qq liblapack-dev liblapacke-dev
- sudo apt-get install -qq libopenblas-dev
# build cmake
- version=3.14
- build=3
- cd /tmp
- wget https://cmake.org/files/v$version/cmake-$version.$build.tar.gz
- tar -xzvf cmake-$version.$build.tar.gz
- cd cmake-$version.$build/
- ./bootstrap
- make -j4
- sudo make install
# needed by vtk in some cases
- sudo apt-get install -qq libpq-dev libpqxx-dev libpq5
- sudo find /usr/lib -name libpq.so
- sudo find /usr/lib -name libpq.so -exec ln -s {} /usr/lib/libpq.so ';'
- export DMRITOOL_SOURCE_DIR=$(pwd)
install:
# build itk
- export NUM_THREADS=4
- export ITK_VERSION=v4.9.0
- export ITK_SOURCE_DIR=${HOME}/itk-${ITK_VERSION}
- export ITK_BUILD_DIR=${ITK_SOURCE_DIR}-build
- export ITK_DIR=${ITK_BUILD_DIR}
- cd $HOME
- git clone --depth 1 --branch ${ITK_VERSION} https://github.com/InsightSoftwareConsortium/ITK.git ${ITK_SOURCE_DIR}
- mkdir ${ITK_BUILD_DIR}
- cd ${ITK_BUILD_DIR}
- cmake ${ITK_SOURCE_DIR} -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=ON -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF -DModule_ITKReview=OFF
- make --jobs=$NUM_THREADS --keep-going
# build SlicerExecutionModel
- cd $HOME
- git clone https://github.com/Slicer/SlicerExecutionModel.git
- mkdir SlicerExecutionModel-build
- cd SlicerExecutionModel-build
- cmake ../SlicerExecutionModel
- make -j ${NUM_THREADS}
script:
- cd ${DMRITOOL_SOURCE_DIR}
- mkdir ../dmritool-build
- cd ../dmritool-build
- export OPENBLAS_NUM_THREADS=1 && export OMP_NUM_THREADS=1
- cmake -DGenerateCLP_DIR=${HOME}/SlicerExecutionModel-build/GenerateCLP -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=ON -DDMRITOOL_USE_MKL=OFF -DDMRITOOL_USE_FASTLAPACK=OFF -DDMRITOOL_USE_OPENMP=OFF -DBUILD_QT_APPLICATIONS=OFF -DDMRITOOL_WRAP_MATLAB=OFF ${DMRITOOL_SOURCE_DIR}
- make gtest_test -j ${NUM_THREADS}
- make SphericalPolarFourierImaging
- make OrientationsViewer
- make -j 3 utlVNLBlasGTest utlVNLLapackGTest utlNDArrayGTest
- cd ./Modules/HelperFunctions/test/
- ./utlVNLBlasGTest && ./utlVNLLapackGTest && ./utlNDArrayGTest
- cd ../../..
- make -j ${NUM_THREADS}
after_script:
- ctest -VV