Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Wrong Fragmentation in MQ 2.5.1.0 #113

Open
aretaon opened this issue Sep 13, 2024 · 0 comments
Open

Wrong Fragmentation in MQ 2.5.1.0 #113

aretaon opened this issue Sep 13, 2024 · 0 comments
Labels

Comments

@aretaon
Copy link

aretaon commented Sep 13, 2024

Describe the bug
Thermo QExactive Plus MSMS HCD fragmentation is incorrectly labelled as "CID" in MQ 2.5.1.0 whereas it is correctly labelled "HCD" in MQ 2.0.2.0 (e.g. in msms.txt).

To Reproduce
Search the same HCD MSMS raw file with MQ 2.0.2.0 and a 2.5.1.0. and compare the Fragmentation column in the results.
Possible related to #33.

Expected behavior
The correct fragmentation method is read out and written to MaxQuant result files.

Screenshots
image
Compare the last two lines (MQ 2.0.2.0) to those above.

Desktop (please complete the following information):

  • OS: Win Server 2022
  • Version MQ 2.5.1.0.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant