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DESCRIPTION
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DESCRIPTION
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Package: MetaVolcanoR
Type: Package
Title: Gene Expression Meta-analysis Visualization Tool
Version: 1.0.1
Authors@R: c(person("Cesar", "Prada", email = "cesar.prada@usp.br",
role = c("aut", "cre")), person("Diogenes", "Lima", email = "diogenes.lima@usp.br",
role = c("aut")), person("Helder", "Nakaya", email = "hnkaya@usp.br",
role = c("aut", "ths")))
Description: MetaVolcanoR combines differential gene expression results.
It implements three strategies to summarize differential gene expression from
different studies. i) Random Effects Model (REM) approach, ii) a p-value
combining-approach, and iii) a vote-counting approach. In all cases,
MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression
meta-analysis results.
Depends: R (>= 3.6.0)
Imports:
methods,
data.table,
dplyr,
tidyr,
plotly,
ggplot2,
cowplot,
parallel,
metafor,
metap,
rlang,
topconfects,
grDevices,
graphics,
stats,
htmlwidgets
Suggests:
knitr,
testthat
License: GPL-3
Encoding: UTF-8
biocViews: GeneExpression, DifferentialExpression, Transcriptomics, mRNAMicroarray, RNASeq
LazyData: true
roxygennote: 6.1.1.9000
VignetteBuilder: knitr
RoxygenNote: 6.1.1