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Changelog.md

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New in this version [1.7]:

  • Initial support for calculating structural connectivity (based on tools from EDTI)

Update 11-12-2024:

  • Bug fixes
  • Updated compatibility to the latest version of WhiteMatterAnalysis
  • Initial support for tractography with Scilpy tools

Update 17-02-2023:

  • This is the last stable release before a major change in structure. From the next release, all main functionalities will be come available as standalone commands and be designed to fully rely on Niftis only.
  • Fixes to the handling of Nifti headers
  • Automated brain extraction using image registration
  • added new class MRT_Library that will collect all own methods currently in MRTTrack and MRTQuant (transition in progress). This will clean MRTTrack and MRTQuant which are meant as documented interfaces.
  • Dramatic speed up of GRL and mFOD (major revision of MRTTrack.PerformDeconv)
  • Changes to MRTQuant.LoadNifti and SaveNifti, which now allows to preserve the original header of NIFTIs (if required). In future releases, no modifications of the headers will be required.
  • Update of Neuro.m to support the latest version of Elastix
  • Compressed niftis are now (un)compressed in a temporary folder
  • Added functions to track multiple FODs simultaneously
  • Changes to the automatic handling of Q-S form of NIFTIs
  • New mFOD fiber tracking
  • New TerminateTractsWithFraction approach with 1 voxel tolerance
  • Moved Trackers to aanother location
  • Fixes to SHPrecomp
  • Fixes to MRIToolkitInit
  • Tractography can now use parallel computing
  • Handling of NIFTI scaling factors
  • Failsafe mode for registration
  • Support for FSL Eddy
  • Support for FOD normalization
  • One call command to run GRL
  • Fix for MSCSD (probably still needs amendment on the detection of data shells)
  • Fix fot CAT12 processing
  • command line fixes
  • standardized preproc includes conformation
  • fixes to conformation
  • support for offset in DKI for GRL
  • fixes to DKI export

Update 09-2021:

  • [NEW] Checkout the tutorial on how to install/use automated tractography clustering (WMA) algorithm with CSD/GRL/mFOD
  • Fixes to MSCSD-related functions
  • Fixes to WM automated clustering
  • Support for Q-form in MRTTrack.ConformSpatialDimensions()
  • New FOD scaling mode for GRL/mFOD
  • Renaming of some command line functions
  • Added an option to customise the number of dRL iterations
  • New functions to estimate SNR from b=0s/mm2 images (MRTQuant)

Update 17-02-2021:

  • Run the CAT12 automatic pipeline for T1 images
  • Code re-organization into two main classes: MRTQuant (preprocessing/DTI/DKI) and MRTrack (Tractography related)
  • Support for automatic fiber clustering (see below for reference)
  • Early support for integration with Python (needed for the point above)
  • Support for VTK poly data 4.2 and 5.1 (also needed for the clustering)
  • Added a robust option to GRL/mFOD deconvolution
  • Initial support for storing the NIFTI Q/S form (to improve interoperability with other tools, not implemented yet)
  • Integration with CAT12