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<!DOCTYPE html>
<html lang="en" data-content_root="./">
<head>
<meta charset="utf-8" />
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<title>Index — DIALS documentation</title>
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<h1 id="index">Index</h1>
<div class="genindex-jumpbox">
<a href="#_"><strong>_</strong></a>
| <a href="#A"><strong>A</strong></a>
| <a href="#B"><strong>B</strong></a>
| <a href="#C"><strong>C</strong></a>
| <a href="#D"><strong>D</strong></a>
| <a href="#E"><strong>E</strong></a>
| <a href="#F"><strong>F</strong></a>
| <a href="#G"><strong>G</strong></a>
| <a href="#H"><strong>H</strong></a>
| <a href="#I"><strong>I</strong></a>
| <a href="#J"><strong>J</strong></a>
| <a href="#K"><strong>K</strong></a>
| <a href="#L"><strong>L</strong></a>
| <a href="#M"><strong>M</strong></a>
| <a href="#N"><strong>N</strong></a>
| <a href="#O"><strong>O</strong></a>
| <a href="#P"><strong>P</strong></a>
| <a href="#R"><strong>R</strong></a>
| <a href="#S"><strong>S</strong></a>
| <a href="#T"><strong>T</strong></a>
| <a href="#U"><strong>U</strong></a>
| <a href="#V"><strong>V</strong></a>
| <a href="#W"><strong>W</strong></a>
| <a href="#X"><strong>X</strong></a>
</div>
<h2 id="_">_</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.background.html#dials.algorithms.background.RadialAverage.__init__">__init__() (dials.algorithms.background.RadialAverage method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesGlobal.__init__">(dials.algorithms.indexing.assign_indices.AssignIndicesGlobal method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesLocal.__init__">(dials.algorithms.indexing.assign_indices.AssignIndicesLocal method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesStrategy.__init__">(dials.algorithms.indexing.assign_indices.AssignIndicesStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.FFT1D.__init__">(dials.algorithms.indexing.basis_vector_search.FFT1D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.FFT3D.__init__">(dials.algorithms.indexing.basis_vector_search.FFT3D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorMinimiser.__init__">(dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorMinimiser method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget.__init__">(dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.RealSpaceGridSearch.__init__">(dials.algorithms.indexing.basis_vector_search.RealSpaceGridSearch method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.Strategy.__init__">(dials.algorithms.indexing.basis_vector_search.Strategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.indexer.Indexer.__init__">(dials.algorithms.indexing.indexer.Indexer method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.lattice_search.LowResSpotMatch.__init__">(dials.algorithms.indexing.lattice_search.LowResSpotMatch method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.lattice_search.PinkIndexer.__init__">(dials.algorithms.indexing.lattice_search.PinkIndexer method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.lattice_search.Strategy.__init__">(dials.algorithms.indexing.lattice_search.Strategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelEvaluation.__init__">(dials.algorithms.indexing.model_evaluation.ModelEvaluation method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRank.__init__">(dials.algorithms.indexing.model_evaluation.ModelRank method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankFilter.__init__">(dials.algorithms.indexing.model_evaluation.ModelRankFilter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankWeighted.__init__">(dials.algorithms.indexing.model_evaluation.ModelRankWeighted method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.nearest_neighbor.NeighborAnalysis.__init__">(dials.algorithms.indexing.nearest_neighbor.NeighborAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.stills_indexer.StillsIndexer.__init__">(dials.algorithms.indexing.stills_indexer.StillsIndexer method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.symmetry.SymmetryHandler.__init__">(dials.algorithms.indexing.symmetry.SymmetryHandler method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Executor.__init__">(dials.algorithms.integration.integrator.Executor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Integrator.__init__">(dials.algorithms.integration.integrator.Integrator method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Integrator3DThreaded.__init__">(dials.algorithms.integration.integrator.Integrator3DThreaded method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.IntegratorExecutor.__init__">(dials.algorithms.integration.integrator.IntegratorExecutor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.JobList.__init__">(dials.algorithms.integration.integrator.JobList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Parameters.__init__">(dials.algorithms.integration.integrator.Parameters method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Parameters.Filter.__init__">(dials.algorithms.integration.integrator.Parameters.Filter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Parameters.Profile.__init__">(dials.algorithms.integration.integrator.Parameters.Profile method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Parameters.Profile.Validation.__init__">(dials.algorithms.integration.integrator.Parameters.Profile.Validation method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Processor2D.__init__">(dials.algorithms.integration.integrator.Processor2D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.Processor3D.__init__">(dials.algorithms.integration.integrator.Processor3D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProcessorFlat3D.__init__">(dials.algorithms.integration.integrator.ProcessorFlat3D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProcessorSingle2D.__init__">(dials.algorithms.integration.integrator.ProcessorSingle2D method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProcessorStills.__init__">(dials.algorithms.integration.integrator.ProcessorStills method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProfileModellerExecutor.__init__">(dials.algorithms.integration.integrator.ProfileModellerExecutor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProfileValidatorExecutor.__init__">(dials.algorithms.integration.integrator.ProfileValidatorExecutor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ReflectionManager.__init__">(dials.algorithms.integration.integrator.ReflectionManager method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLbfgs.__init__">(dials.algorithms.refinement.engine.AdaptLbfgs method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLstbx.__init__">(dials.algorithms.refinement.engine.AdaptLstbx method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.GaussNewtonIterations.__init__">(dials.algorithms.refinement.engine.GaussNewtonIterations method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.Refinery.__init__">(dials.algorithms.refinement.engine.Refinery method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.Refiner.__init__">(dials.algorithms.refinement.refiner.Refiner method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.reflection_manager.BlockCalculator.__init__">(dials.algorithms.refinement.reflection_manager.BlockCalculator method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.reflection_manager.LaueReflectionManager.__init__">(dials.algorithms.refinement.reflection_manager.LaueReflectionManager method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.reflection_manager.ReflectionManager.__init__">(dials.algorithms.refinement.reflection_manager.ReflectionManager method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.reflection_manager.TOFReflectionManager.__init__">(dials.algorithms.refinement.reflection_manager.TOFReflectionManager method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.LaueLeastSquaresResidualWithRmsdCutoff.__init__">(dials.algorithms.refinement.target.LaueLeastSquaresResidualWithRmsdCutoff method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.LeastSquaresPositionalResidualWithRmsdCutoff.__init__">(dials.algorithms.refinement.target.LeastSquaresPositionalResidualWithRmsdCutoff method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.__init__">(dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoff.__init__">(dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoff method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.ConstantWeightingStrategy.__init__">(dials.algorithms.refinement.weighting_strategies.ConstantWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.LaueMixedWeightingStrategy.__init__">(dials.algorithms.refinement.weighting_strategies.LaueMixedWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.LaueStatisticalWeightingStrategy.__init__">(dials.algorithms.refinement.weighting_strategies.LaueStatisticalWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.StillsWeightingStrategy.__init__">(dials.algorithms.refinement.weighting_strategies.StillsWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ArrayScalingModel.__init__">(dials.algorithms.scaling.model.model.ArrayScalingModel method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.DoseDecay.__init__">(dials.algorithms.scaling.model.model.DoseDecay method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.KBScalingModel.__init__">(dials.algorithms.scaling.model.model.KBScalingModel method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.PhysicalScalingModel.__init__">(dials.algorithms.scaling.model.model.PhysicalScalingModel method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ScalingModelBase.__init__">(dials.algorithms.scaling.model.model.ScalingModelBase method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.NormDevOutlierRejection.__init__">(dials.algorithms.scaling.outlier_rejection.NormDevOutlierRejection method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.OutlierRejectionBase.__init__">(dials.algorithms.scaling.outlier_rejection.OutlierRejectionBase method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.SimpleNormDevOutlierRejection.__init__">(dials.algorithms.scaling.outlier_rejection.SimpleNormDevOutlierRejection method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.TargetedOutlierRejection.__init__">(dials.algorithms.scaling.outlier_rejection.TargetedOutlierRejection method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.BackgroundGradientFilter.__init__">(dials.algorithms.spot_finding.factory.BackgroundGradientFilter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.FilterRunner.__init__">(dials.algorithms.spot_finding.factory.FilterRunner method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.PeakCentroidDistanceFilter.__init__">(dials.algorithms.spot_finding.factory.PeakCentroidDistanceFilter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.SpotDensityFilter.__init__">(dials.algorithms.spot_finding.factory.SpotDensityFilter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.ExtractPixelsFromImage.__init__">(dials.algorithms.spot_finding.finder.ExtractPixelsFromImage method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.ExtractPixelsFromImage2DNoShoeboxes.__init__">(dials.algorithms.spot_finding.finder.ExtractPixelsFromImage2DNoShoeboxes method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.ExtractSpots.__init__">(dials.algorithms.spot_finding.finder.ExtractSpots method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.ExtractSpotsParallelTask.__init__">(dials.algorithms.spot_finding.finder.ExtractSpotsParallelTask method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.SpotFinder.__init__">(dials.algorithms.spot_finding.finder.SpotFinder method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.TOFSpotFinder.__init__">(dials.algorithms.spot_finding.finder.TOFSpotFinder method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_prediction.html#dials.algorithms.spot_prediction.reflection_predictor.ReflectionPredictor.__init__">(dials.algorithms.spot_prediction.reflection_predictor.ReflectionPredictor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.CosymAnalysis.__init__">(dials.algorithms.symmetry.cosym.CosymAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs.__init__">(dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.ScoreSubGroup.__init__">(dials.algorithms.symmetry.cosym.ScoreSubGroup method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.ScoreSymmetryElement.__init__">(dials.algorithms.symmetry.cosym.ScoreSymmetryElement method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.SymmetryAnalysis.__init__">(dials.algorithms.symmetry.cosym.SymmetryAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.__init__">(dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator.__init__">(dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.LaueGroupAnalysis.__init__">(dials.algorithms.symmetry.laue_group.LaueGroupAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.ScoreCorrelationCoefficient.__init__">(dials.algorithms.symmetry.laue_group.ScoreCorrelationCoefficient method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.ScoreSubGroup.__init__">(dials.algorithms.symmetry.laue_group.ScoreSubGroup method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.ScoreSymmetryElement.__init__">(dials.algorithms.symmetry.laue_group.ScoreSymmetryElement method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.symmetry_base.__init__">(dials.algorithms.symmetry.symmetry_base method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.dispersion_spotfinder_threshold_ext.DispersionSpotFinderThresholdExt.__init__">(dials.extensions.dispersion_spotfinder_threshold_ext.DispersionSpotFinderThresholdExt method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.null_background_ext.NullBackgroundExt.__init__">(dials.extensions.null_background_ext.NullBackgroundExt method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.simple_background_ext.SimpleBackgroundExt.__init__">(dials.extensions.simple_background_ext.SimpleBackgroundExt method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.simple_centroid_ext.SimpleCentroidExt.__init__">(dials.extensions.simple_centroid_ext.SimpleCentroidExt method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.command_line.ProgressBar.__init__">(dials.util.command_line.ProgressBar method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.command_line.ProgressBarTimer.__init__">(dials.util.command_line.ProgressBarTimer method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.MTZWriterBase.__init__">(dials.util.export_mtz.MTZWriterBase method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.WavelengthGroup.__init__">(dials.util.export_mtz.WavelengthGroup method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.ArgumentParser.__init__">(dials.util.options.ArgumentParser method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.ArgumentParserBase.__init__">(dials.util.options.ArgumentParserBase method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.Importer.__init__">(dials.util.options.Importer method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.OptionParser.__init__">(dials.util.options.OptionParser method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.PhilCommandParser.__init__">(dials.util.options.PhilCommandParser method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ExternalLookup.__init__">(dxtbx.imageset.ExternalLookup method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ExternalLookupItemBool.__init__">(dxtbx.imageset.ExternalLookupItemBool method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ExternalLookupItemDouble.__init__">(dxtbx.imageset.ExternalLookupItemDouble method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageGrid.__init__">(dxtbx.imageset.ImageGrid method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSequence.__init__">(dxtbx.imageset.ImageSequence method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.__init__">(dxtbx.imageset.ImageSet method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSetData.__init__">(dxtbx.imageset.ImageSetData method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.MemReader.__init__">(dxtbx.imageset.MemReader method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.Crystal.__init__">(dxtbx.model.Crystal method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.Detector.__init__">(dxtbx.model.Detector method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.experiment_list.BeamComparison.__init__">(dxtbx.model.experiment_list.BeamComparison method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.experiment_list.DetectorComparison.__init__">(dxtbx.model.experiment_list.DetectorComparison method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.experiment_list.GoniometerComparison.__init__">(dxtbx.model.experiment_list.GoniometerComparison method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.__init__">(dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/goniometer.html#dxtbx.model.goniometer.Goniometer.__init__">(dxtbx.model.goniometer.Goniometer method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/goniometer.html#dxtbx.model.goniometer.KappaGoniometer.__init__">(dxtbx.model.goniometer.KappaGoniometer method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/goniometer.html#dxtbx.model.goniometer.MultiAxisGoniometer.__init__">(dxtbx.model.goniometer.MultiAxisGoniometer method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.MosaicCrystalKabsch2010.__init__">(dxtbx.model.MosaicCrystalKabsch2010 method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.MosaicCrystalSauter2014.__init__">(dxtbx.model.MosaicCrystalSauter2014 method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/serialize.html#dxtbx.serialize.xds.to_xds.__init__">(dxtbx.serialize.xds.to_xds method)</a>
</li>
</ul></li>
</ul></td>
</tr></table>
<h2 id="A">A</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ReflectionManager.accumulate">accumulate() (dials.algorithms.integration.integrator.ReflectionManager method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator.accumulate">(dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.LaueLeastSquaresResidualWithRmsdCutoff.achieved">achieved() (dials.algorithms.refinement.target.LaueLeastSquaresResidualWithRmsdCutoff method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.LeastSquaresPositionalResidualWithRmsdCutoff.achieved">(dials.algorithms.refinement.target.LeastSquaresPositionalResidualWithRmsdCutoff method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.achieved">(dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoff.achieved">(dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoff method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLbfgs">AdaptLbfgs (class in dials.algorithms.refinement.engine)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLstbx">AdaptLstbx (class in dials.algorithms.refinement.engine)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.background.html#dials.algorithms.background.RadialAverage.add">add() (dials.algorithms.background.RadialAverage method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.JobList.add">(dials.algorithms.integration.integrator.JobList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/scan.html#dxtbx.model.scan.ScanFactory.add">(dxtbx.model.scan.ScanFactory static method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.add_batch_list">add_batch_list() (in module dials.util.export_mtz)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.Journal.add_column">add_column() (dials.algorithms.refinement.engine.Journal method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.LevenbergMarquardtIterations.add_constant_to_diagonal">add_constant_to_diagonal() (dials.algorithms.refinement.engine.LevenbergMarquardtIterations method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.MTZWriterBase.add_crystal">add_crystal() (dials.util.export_mtz.MTZWriterBase method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.MADMergedMTZWriter.add_dataset">add_dataset() (dials.util.export_mtz.MADMergedMTZWriter method)</a>
<ul>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.MergedMTZWriter.add_dataset">(dials.util.export_mtz.MergedMTZWriter method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.MTZWriterBase.add_empty_dataset">add_empty_dataset() (dials.util.export_mtz.MTZWriterBase method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.WavelengthGroup.add_experiment">add_experiment() (dials.util.export_mtz.WavelengthGroup method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.Detector.add_group">add_group() (dxtbx.model.Detector method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.Detector.add_panel">add_panel() (dxtbx.model.Detector method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.Journal.add_row">add_row() (dials.algorithms.refinement.engine.Journal method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.gaussian_rs_profile_model_ext.GaussianRSProfileModelExt.algorithm">algorithm() (dials.extensions.gaussian_rs_profile_model_ext.GaussianRSProfileModelExt static method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_laue">all_laue() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_rotations">all_rotations() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_same_type">all_same_type() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_sequences">all_sequences() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_stills">all_stills() (dxtbx.model.ExperimentList method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.all_tof">all_tof() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRank.append">append() (dials.algorithms.indexing.model_evaluation.ModelRank method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankFilter.append">(dials.algorithms.indexing.model_evaluation.ModelRankFilter method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.append">(dxtbx.model.ExperimentList method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.indexer.apply_hkl_offset">apply_hkl_offset() (in module dials.algorithms.indexing.indexer)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.symmetry.SymmetryHandler.apply_symmetry">apply_symmetry() (dials.algorithms.indexing.symmetry.SymmetryHandler method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.ArgumentHandlingErrorInfo">ArgumentHandlingErrorInfo (class in dials.util.options)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.ArgumentParser">ArgumentParser (class in dials.util.options)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.options.ArgumentParserBase">ArgumentParserBase (class in dials.util.options)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ArrayScalingModel">ArrayScalingModel (class in dials.algorithms.scaling.model.model)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.CosymAnalysis.as_dict">as_dict() (dials.algorithms.symmetry.cosym.CosymAnalysis method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.ScoreSubGroup.as_dict">(dials.algorithms.symmetry.cosym.ScoreSubGroup method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.ScoreSymmetryElement.as_dict">(dials.algorithms.symmetry.cosym.ScoreSymmetryElement method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.SymmetryAnalysis.as_dict">(dials.algorithms.symmetry.cosym.SymmetryAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.LaueGroupAnalysis.as_dict">(dials.algorithms.symmetry.laue_group.LaueGroupAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.ScoreSubGroup.as_dict">(dials.algorithms.symmetry.laue_group.ScoreSubGroup method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.ScoreSymmetryElement.as_dict">(dials.algorithms.symmetry.laue_group.ScoreSymmetryElement method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.as_file">as_file() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.as_imageset">as_imageset() (dxtbx.imageset.ImageSet method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.CosymAnalysis.as_json">as_json() (dials.algorithms.symmetry.cosym.CosymAnalysis method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.LaueGroupAnalysis.as_json">(dials.algorithms.symmetry.laue_group.LaueGroupAnalysis method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.as_json">(dxtbx.model.ExperimentList method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.Crystal.as_str">as_str() (dxtbx.model.Crystal method)</a>
<ul>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.MosaicCrystalKabsch2010.as_str">(dxtbx.model.MosaicCrystalKabsch2010 method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.MosaicCrystalSauter2014.as_str">(dxtbx.model.MosaicCrystalSauter2014 method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesGlobal">AssignIndicesGlobal (class in dials.algorithms.indexing.assign_indices)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesLocal">AssignIndicesLocal (class in dials.algorithms.indexing.assign_indices)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.assign_indices.AssignIndicesStrategy">AssignIndicesStrategy (class in dials.algorithms.indexing.assign_indices)</a>
</li>
</ul></td>
</tr></table>
<h2 id="B">B</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.BackgroundGradientFilter">BackgroundGradientFilter (class in dials.algorithms.spot_finding.factory)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.installer.installer.base_package_options">base_package_options (dials.util.installer.installer attribute)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/serialize.html#dxtbx.serialize.imageset.basic_imageset_from_dict">basic_imageset_from_dict() (in module dxtbx.serialize.imageset)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/serialize.html#dxtbx.serialize.imageset.basic_imageset_to_dict">basic_imageset_to_dict() (in module dxtbx.serialize.imageset)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorMinimiser">BasisVectorMinimiser (class in dials.algorithms.indexing.basis_vector_search.optimise)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget">BasisVectorTarget (class in dials.algorithms.indexing.basis_vector_search.optimise)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.experiment_list.BeamComparison">BeamComparison (class in dxtbx.model.experiment_list)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/dxtbx/beam.html#dxtbx.model.beam.BeamFactory">BeamFactory (class in dxtbx.model.beam)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.beams">beams() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRank.best_model">best_model() (dials.algorithms.indexing.model_evaluation.ModelRank method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankFilter.best_model">(dials.algorithms.indexing.model_evaluation.ModelRankFilter method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankWeighted.best_model">(dials.algorithms.indexing.model_evaluation.ModelRankWeighted method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.reflection_manager.BlockCalculator">BlockCalculator (class in dials.algorithms.refinement.reflection_manager)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLstbx.build_up">build_up() (dials.algorithms.refinement.engine.AdaptLstbx method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="C">C</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.stills_indexer.calc_2D_rmsd_and_displacements">calc_2D_rmsd_and_displacements() (in module dials.algorithms.indexing.stills_indexer)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.symmetry.calc_acentric_subgroups">calc_acentric_subgroups() (in module dials.algorithms.indexing.symmetry)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.Refiner.calc_exp_rmsd_table">calc_exp_rmsd_table() (dials.algorithms.refinement.refiner.Refiner method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.calc_n_param_from_bins">calc_n_param_from_bins() (in module dials.algorithms.scaling.model.model)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLstbx.calculate_esds">calculate_esds() (dials.algorithms.refinement.engine.AdaptLstbx method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.calculate_gradients">calculate_gradients() (dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.calculate_new_offset">calculate_new_offset() (in module dials.algorithms.scaling.model.model)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.WavelengthGroup.calculate_weighted_mean">calculate_weighted_mean() (dials.util.export_mtz.WavelengthGroup method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.ConstantWeightingStrategy.calculate_weights">calculate_weights() (dials.algorithms.refinement.weighting_strategies.ConstantWeightingStrategy method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.ExternalDelPsiWeightingStrategy.calculate_weights">(dials.algorithms.refinement.weighting_strategies.ExternalDelPsiWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.LaueMixedWeightingStrategy.calculate_weights">(dials.algorithms.refinement.weighting_strategies.LaueMixedWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.LaueStatisticalWeightingStrategy.calculate_weights">(dials.algorithms.refinement.weighting_strategies.LaueStatisticalWeightingStrategy method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.StatisticalWeightingStrategy.calculate_weights">(dials.algorithms.refinement.weighting_strategies.StatisticalWeightingStrategy static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.StillsWeightingStrategy.calculate_weights">(dials.algorithms.refinement.weighting_strategies.StillsWeightingStrategy method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLbfgs.callback_after_step">callback_after_step() (dials.algorithms.refinement.engine.AdaptLbfgs method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs.callback_after_step">(dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.combinations.candidate_orientation_matrices">candidate_orientation_matrices() (in module dials.algorithms.indexing.basis_vector_search.combinations)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.change_basis">change_basis() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.change_of_basis_op_to_best_cell">change_of_basis_op_to_best_cell() (in module dials.algorithms.symmetry.cosym)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.FilterRunner.check_flags">check_flags() (dials.algorithms.spot_finding.factory.FilterRunner method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.stills_indexer.StillsIndexer.choose_best_orientation_matrix">choose_best_orientation_matrix() (dials.algorithms.indexing.stills_indexer.StillsIndexer method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.clear">clear() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.clear_cache">clear_cache() (dxtbx.imageset.ImageSet method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator.coefficient">coefficient() (dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.command_line.coloured">coloured() (in module dials.util.command_line)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.ModelRankWeighted.combined_scores">combined_scores() (dials.algorithms.indexing.model_evaluation.ModelRankWeighted method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.command_line.Command">Command (class in dials.util.command_line)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSequence.complete_set">complete_set() (dxtbx.imageset.ImageSequence method)</a>
<ul>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.complete_set">(dxtbx.imageset.ImageSet method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/dxtbx/beam.html#dxtbx.model.beam.BeamFactory.complex">complex() (dxtbx.model.beam.BeamFactory static method)</a>
<ul>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.detector.DetectorFactory.complex">(dxtbx.model.detector.DetectorFactory static method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ScalingModelBase.components">components (dials.algorithms.scaling.model.model.ScalingModelBase property)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.null_background_ext.NullBackgroundExt.compute_background">compute_background() (dials.extensions.null_background_ext.NullBackgroundExt method)</a>
<ul>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.simple_background_ext.SimpleBackgroundExt.compute_background">(dials.extensions.simple_background_ext.SimpleBackgroundExt method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.simple_centroid_ext.SimpleCentroidExt.compute_centroid">compute_centroid() (dials.extensions.simple_centroid_ext.SimpleCentroidExt method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget.compute_functional">compute_functional() (dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.RealSpaceGridSearch.compute_functional">(dials.algorithms.indexing.basis_vector_search.RealSpaceGridSearch static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.compute_functional">(dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorMinimiser.compute_functional_and_gradients">compute_functional_and_gradients() (dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorMinimiser method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget.compute_functional_and_gradients">(dials.algorithms.indexing.basis_vector_search.optimise.BasisVectorTarget method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLbfgs.compute_functional_and_gradients">(dials.algorithms.refinement.engine.AdaptLbfgs method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs.compute_functional_and_gradients">(dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs method)</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.AdaptLbfgs.compute_functional_gradients_and_curvatures">compute_functional_gradients_and_curvatures() (dials.algorithms.refinement.engine.AdaptLbfgs method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.compute_functional_gradients_and_curvatures">(dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs.compute_functional_gradients_and_curvatures">(dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.LBFGScurvs.compute_functional_gradients_diag">compute_functional_gradients_diag() (dials.algorithms.refinement.engine.LBFGScurvs method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs.compute_functional_gradients_diag">(dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.compute_gradients">compute_gradients() (dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.compute_gradients_fd">compute_gradients_fd() (dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.compute_residuals">compute_residuals() (dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.compute_residuals_and_gradients">compute_residuals_and_gradients() (dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.compute_restraints_functional_gradients_and_curvatures">compute_restraints_functional_gradients_and_curvatures() (dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.Target.compute_restraints_residuals_and_gradients">compute_restraints_residuals_and_gradients() (dials.algorithms.refinement.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.dispersion_spotfinder_threshold_ext.DispersionSpotFinderThresholdExt.compute_threshold">compute_threshold() (dials.extensions.dispersion_spotfinder_threshold_ext.DispersionSpotFinderThresholdExt method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.RefinerFactory.config_refinery">config_refinery() (dials.algorithms.refinement.refiner.RefinerFactory static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.RefinerFactory.config_restraints">config_restraints() (dials.algorithms.refinement.refiner.RefinerFactory static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.RefinerFactory.config_sparse">config_sparse() (dials.algorithms.refinement.refiner.RefinerFactory static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.refiner.RefinerFactory.config_target">config_target() (dials.algorithms.refinement.refiner.RefinerFactory static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ScalingModelBase.configdict">configdict (dials.algorithms.scaling.model.model.ScalingModelBase property)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ArrayScalingModel.configure_components">configure_components() (dials.algorithms.scaling.model.model.ArrayScalingModel method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.DoseDecay.configure_components">(dials.algorithms.scaling.model.model.DoseDecay method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.KBScalingModel.configure_components">(dials.algorithms.scaling.model.model.KBScalingModel method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.PhysicalScalingModel.configure_components">(dials.algorithms.scaling.model.model.PhysicalScalingModel method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ScalingModelBase.configure_components">(dials.algorithms.scaling.model.model.ScalingModelBase method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.SpotFinderFactory.configure_filter">configure_filter() (dials.algorithms.spot_finding.factory.SpotFinderFactory static method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.installer.installer.configure_modules">configure_modules (dials.util.installer.installer attribute)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.factory.SpotFinderFactory.configure_threshold">configure_threshold() (dials.algorithms.spot_finding.factory.SpotFinderFactory static method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ArrayScalingModel.consecutive_refinement_order">consecutive_refinement_order (dials.algorithms.scaling.model.model.ArrayScalingModel property)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.DoseDecay.consecutive_refinement_order">(dials.algorithms.scaling.model.model.DoseDecay property)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.KBScalingModel.consecutive_refinement_order">(dials.algorithms.scaling.model.model.KBScalingModel property)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.PhysicalScalingModel.consecutive_refinement_order">(dials.algorithms.scaling.model.model.PhysicalScalingModel property)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ScalingModelBase.consecutive_refinement_order">consecutive_refinement_order() (dials.algorithms.scaling.model.model.ScalingModelBase method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.weighting_strategies.ConstantWeightingStrategy">ConstantWeightingStrategy (class in dials.algorithms.refinement.weighting_strategies)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.GaussNewtonIterations.convergence_as_shift_over_esd">convergence_as_shift_over_esd (dials.algorithms.refinement.engine.GaussNewtonIterations attribute)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.export_mtz.convert_to_cambridge">convert_to_cambridge() (in module dials.util.export_mtz)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.MemReader.copy">copy() (dxtbx.imageset.MemReader method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator">CorrelationCoefficientAccumulator (class in dials.algorithms.symmetry.laue_group)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.CosymAnalysis">CosymAnalysis (class in dials.algorithms.symmetry.cosym)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.Crystal">Crystal (class in dxtbx.model)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.model_evaluation.Result.crystal">crystal (dials.algorithms.indexing.model_evaluation.Result attribute)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/serialize.html#dxtbx.serialize.load.crystal">crystal() (in module dxtbx.serialize.load)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.crystal.CrystalFactory">CrystalFactory (class in dxtbx.model.crystal)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.crystals">crystals() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.curvatures">curvatures() (dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.curvatures_fd">curvatures_fd() (dials.algorithms.symmetry.cosym.target.Target method)</a>
</li>
</ul></td>
</tr></table>
<h2 id="D">D</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.GaussNewtonIterations.damping_value">damping_value (dials.algorithms.refinement.engine.GaussNewtonIterations attribute)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ExternalLookupItemBool.data">data (dxtbx.imageset.ExternalLookupItemBool property)</a>
<ul>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ExternalLookupItemDouble.data">(dxtbx.imageset.ExternalLookupItemDouble property)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.IntegratorExecutor.data">data() (dials.algorithms.integration.integrator.IntegratorExecutor method)</a>
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProfileModellerExecutor.data">(dials.algorithms.integration.integrator.ProfileModellerExecutor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProfileValidatorExecutor.data">(dials.algorithms.integration.integrator.ProfileValidatorExecutor method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ReflectionManager.data">(dials.algorithms.integration.integrator.ReflectionManager method)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.data">(dxtbx.imageset.ImageSet method)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.gaussian_rs_profile_model_ext.GaussianRSProfileModelExt.default">default (dials.extensions.gaussian_rs_profile_model_ext.GaussianRSProfileModelExt attribute)</a>
<ul>
<li><a href="documentation/library_reference/extensions/index.html#dials.extensions.simple_centroid_ext.SimpleCentroidExt.default">(dials.extensions.simple_centroid_ext.SimpleCentroidExt attribute)</a>
</li>
</ul></li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.Journal.del_last_row">del_last_row() (dials.algorithms.refinement.engine.Journal method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator.denominator">denominator() (dials.algorithms.symmetry.laue_group.CorrelationCoefficientAccumulator method)</a>
</li>
<li><a href="documentation/library_reference/util/index.html#dials.util.installer.installer.dest_dir_prefix">dest_dir_prefix (dials.util.installer.installer attribute)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.Detector">Detector (class in dxtbx.model)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.experiment_list.DetectorComparison">DetectorComparison (class in dxtbx.model.experiment_list)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/detector.html#dxtbx.model.detector.DetectorFactory">DetectorFactory (class in dxtbx.model.detector)</a>
</li>
<li><a href="documentation/library_reference/dxtbx/experiment_list.html#dxtbx.model.ExperimentList.detectors">detectors() (dxtbx.model.ExperimentList method)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.determine_auto_absorption_params">determine_auto_absorption_params() (in module dials.algorithms.scaling.model.model)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.determine_Esq_outlier_index_arrays">determine_Esq_outlier_index_arrays() (in module dials.algorithms.scaling.outlier_rejection)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.outlier_rejection.determine_outlier_index_arrays">determine_outlier_index_arrays() (in module dials.algorithms.scaling.outlier_rejection)</a>
</li>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.reindex_to_reference.determine_reindex_operator_against_reference">determine_reindex_operator_against_reference() (in module dials.algorithms.symmetry.reindex_to_reference)</a>
</li>
<li>
dials.algorithms.background
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.background.html#module-dials.algorithms.background">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.assign_indices
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.assign_indices">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.basis_vector_search
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.basis_vector_search">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.basis_vector_search.combinations
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.basis_vector_search.combinations">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.basis_vector_search.optimise
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.basis_vector_search.optimise">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.compare_orientation_matrices
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.compare_orientation_matrices">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.indexer
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.indexer">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.lattice_search
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.lattice_search">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.max_cell
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.max_cell">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.model_evaluation
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.model_evaluation">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.nearest_neighbor
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.nearest_neighbor">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.refinement
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.refinement">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.stills_indexer
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.stills_indexer">module</a>
</li>
</ul></li>
<li>
dials.algorithms.indexing.symmetry
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#module-dials.algorithms.indexing.symmetry">module</a>
</li>
</ul></li>
<li>
dials.algorithms.integration.integrator
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#module-dials.algorithms.integration.integrator">module</a>
</li>
</ul></li>
<li>
dials.algorithms.profile_model
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.profile_model.html#module-dials.algorithms.profile_model">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.engine
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.engine">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.refiner
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.refiner">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.reflection_manager
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.reflection_manager">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.target
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.target">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.target_stills
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.target_stills">module</a>
</li>
</ul></li>
<li>
dials.algorithms.refinement.weighting_strategies
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#module-dials.algorithms.refinement.weighting_strategies">module</a>
</li>
</ul></li>
<li>
dials.algorithms.scaling
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#module-dials.algorithms.scaling">module</a>
</li>
</ul></li>
<li>
dials.algorithms.scaling.model.model
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#module-dials.algorithms.scaling.model.model">module</a>
</li>
</ul></li>
<li>
dials.algorithms.scaling.outlier_rejection
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#module-dials.algorithms.scaling.outlier_rejection">module</a>
</li>
</ul></li>
<li>
dials.algorithms.spot_finding.factory
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#module-dials.algorithms.spot_finding.factory">module</a>
</li>
</ul></li>
<li>
dials.algorithms.spot_finding.finder
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#module-dials.algorithms.spot_finding.finder">module</a>
</li>
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li>
dials.algorithms.spot_prediction.reflection_predictor
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_prediction.html#module-dials.algorithms.spot_prediction.reflection_predictor">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry.cosym
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry.cosym">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry.cosym.engine
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry.cosym.engine">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry.cosym.target
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry.cosym.target">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry.laue_group
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry.laue_group">module</a>
</li>
</ul></li>
<li>
dials.algorithms.symmetry.reindex_to_reference
<ul>
<li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#module-dials.algorithms.symmetry.reindex_to_reference">module</a>
</li>
</ul></li>
<li>
dials.array_family.flex
<ul>
<li><a href="documentation/library_reference/array_family/index.html#module-dials.array_family.flex">module</a>
</li>
</ul></li>