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config_gui.py
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config_gui.py
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import tkinter as tk
from tkinter import ttk
import json
class ConfigGUI:
def __init__(self, root, run_processing, config_defaults):
self.root = root
self.run_processing = run_processing
self.config_defaults = config_defaults
self.notebook = ttk.Notebook(root)
self.notebook.pack(fill='both', expand=True)
self.parameters_tab = ttk.Frame(self.notebook)
self.notebook.add(self.parameters_tab, text='Parameters')
# Create GUI elements for parameters
self.create_parameters_section()
def create_parameters_section(self):
"""Create GUI elements for parameters."""
# Parameters Section
ttk.Label(self.parameters_tab, text="Output Directory:").grid(row=0, column=0, sticky='w')
self.output_dir = tk.StringVar(value=self.config_defaults.get('Parameters', {}).get('output_dir', ''))
ttk.Entry(self.parameters_tab, textvariable=self.output_dir).grid(row=0, column=1, sticky='ew')
ttk.Label(self.parameters_tab, text="Info Path:").grid(row=1, column=0, sticky='w')
self.info_path = tk.StringVar(value=self.config_defaults.get('Parameters', {}).get('info_path', ''))
ttk.Entry(self.parameters_tab, textvariable=self.info_path).grid(row=1, column=1, sticky='ew')
ttk.Label(self.parameters_tab, text="Data Directory:").grid(row=2, column=0, sticky='w')
self.data_dir = tk.StringVar(value=self.config_defaults.get('Parameters', {}).get('data_dir', ''))
ttk.Entry(self.parameters_tab, textvariable=self.data_dir).grid(row=2, column=1, sticky='ew')
ttk.Label(self.parameters_tab, text="Scale:").grid(row=3, column=0, sticky='w')
self.scale = tk.IntVar(value=self.config_defaults.get('Parameters', {}).get('scale', 2))
ttk.Entry(self.parameters_tab, textvariable=self.scale).grid(row=3, column=1, sticky='ew')
ttk.Label(self.parameters_tab, text="Metric:").grid(row=4, column=0, sticky='w')
self.metric = tk.StringVar(value=self.config_defaults.get('Parameters', {}).get('metric', 'shore_mean_gfa'))
ttk.Entry(self.parameters_tab, textvariable=self.metric).grid(row=4, column=1, sticky='ew')
# Filters Section
ttk.Label(self.parameters_tab, text="Filters:").grid(row=5, column=0, sticky='w', pady="5")
filters_frame = ttk.Frame(self.parameters_tab)
filters_frame.grid(row=6, column=0, columnspan=2, sticky='ew')
self.filter_vars = {}
self.filter_options = {}
filters = self.config_defaults.get('Parameters', {}).get('filters', [])
self.selected_filters = {}
for i, filter_name in enumerate(filters):
ttk.Label(filters_frame, text=filter_name).grid(row=i, column=0, sticky='w')
filter_values = self.config_defaults.get('Parameters', {}).get(filter_name, [])
# Ensure values are strings
filter_values_str = [str(val) for val in filter_values]
self.selected_filters[filter_name] = tk.StringVar(value=', '.join(filter_values_str))
filter_combobox = ttk.Combobox(filters_frame, textvariable=self.selected_filters[filter_name], values=filter_values_str, state='normal')
filter_combobox.grid(row=i, column=1, sticky='ew')
def create_processing_section(self):
"""Create GUI elements for processing."""
# Processing Section
ttk.Label(self.processing_tab, text="Processing:").grid(row=0, column=0, sticky='w', pady="5")
processing_frame = ttk.Frame(self.processing_tab)
processing_frame.grid(row=1, column=0, columnspan=2, sticky='ew')
self.processing_vars = {}
self.processing_paths = {}
processing_config = self.config_defaults.get('Parameters', {}).get('processing', {})
for i, (proc_name, proc_path) in enumerate(processing_config.items()):
self.processing_vars[proc_name] = tk.IntVar(value=1)
self.processing_paths[proc_name] = tk.StringVar(value=proc_path)
ttk.Checkbutton(processing_frame, text=proc_name, variable=self.processing_vars[proc_name]).grid(row=i, column=0, sticky='w')
ttk.Entry(processing_frame, textvariable=self.processing_paths[proc_name]).grid(row=i, column=1, sticky='ew')
def create_bias_section(self):
"""Create GUI elements for BIAS parameters."""
# BIAS Section
ttk.Label(self.bias_tab, text="BIAS Analysis:").grid(row=0, column=0, sticky='w', pady="5")
bias_frame = ttk.Frame(self.bias_tab)
bias_frame.grid(row=1, column=0, columnspan=2, sticky='ew')
self.bias_analysis = tk.BooleanVar(value=self.config_defaults.get('BIAS', {}).get('perform_analysis', False))
ttk.Checkbutton(bias_frame, text="Perform Bias Analysis", variable=self.bias_analysis).grid(row=0, column=0, sticky='w')
ttk.Label(bias_frame, text="Dimensionality Reduction Method:").grid(row=1, column=0, sticky='w')
self.dim_reduc = tk.StringVar(value=self.config_defaults.get('BIAS', {}).get('DimReduc', 'PCA'))
reduction_options = ['PCA', 'Other'] # Add other options as necessary
ttk.OptionMenu(bias_frame, self.dim_reduc, *reduction_options).grid(row=1, column=1, sticky='ew')
ttk.Label(bias_frame, text="Colors Key:").grid(row=2, column=0, sticky='w')
self.colors_key = tk.StringVar(value=self.config_defaults.get('BIAS', {}).get('colors_key', ''))
ttk.Entry(bias_frame, textvariable=self.colors_key).grid(row=2, column=1, sticky='ew')
def create_consensus_section(self):
"""Create GUI elements for CONSENSUS parameters."""
# CONSENSUS Section
ttk.Label(self.consensus_tab, text="CONSENSUS Analysis:").grid(row=0, column=0, sticky='w', pady="5")
consensus_frame = ttk.Frame(self.consensus_tab)
consensus_frame.grid(row=1, column=0, columnspan=2, sticky='ew')
self.consensus_analysis = tk.BooleanVar(value=self.config_defaults.get('CONSENSUS', {}).get('perform_analysis', False))
ttk.Checkbutton(consensus_frame, text="Perform Consensus Analysis", variable=self.consensus_analysis).grid(row=0, column=0, sticky='w')
ttk.Label(consensus_frame, text="Number of Bins:").grid(row=1, column=0, sticky='w')
self.nbins = tk.IntVar(value=self.config_defaults.get('CONSENSUS', {}).get('nbins', 10))
ttk.Entry(consensus_frame, textvariable=self.nbins).grid(row=1, column=1, sticky='ew')
def create_harmonics_section(self):
"""Create GUI elements for HARMONICS parameters."""
# HARMONICS Section
ttk.Label(self.harmonics_tab, text="HARMONICS Analysis:").grid(row=0, column=0, sticky='w', pady="5")
harmonics_frame = ttk.Frame(self.harmonics_tab)
harmonics_frame.grid(row=1, column=0, columnspan=2, sticky='ew')
self.generate_harmonics = tk.BooleanVar(value=self.config_defaults.get('HARMONICS', {}).get('generate_harmonics', False))
ttk.Checkbutton(harmonics_frame, text="Generate Harmonics", variable=self.generate_harmonics).grid(row=0, column=0, sticky='w')
self.compare_harmonics = tk.BooleanVar(value=self.config_defaults.get('HARMONICS', {}).get('compare_harmonics', False))
ttk.Checkbutton(harmonics_frame, text="Compare Harmonics", variable=self.compare_harmonics).grid(row=1, column=0, sticky='w')
self.consensus_harmonics = tk.BooleanVar(value=self.config_defaults.get('HARMONICS', {}).get('consensus', False))
ttk.Checkbutton(harmonics_frame, text="Harmonics Consensus", variable=self.consensus_harmonics).grid(row=2, column=0, sticky='w')
def create_indvscons_section(self):
"""Create GUI elements for INDvsCONS parameters."""
# INDvsCONS Section
ttk.Label(self.indvscons_tab, text="INDvsCONS Analysis:").grid(row=0, column=0, sticky='w', pady="5")
indvscons_frame = ttk.Frame(self.indvscons_tab)
indvscons_frame.grid(row=1, column=0, columnspan=2, sticky='ew')
self.indvscons_analysis = tk.BooleanVar(value=self.config_defaults.get('INDvsCONS', {}).get('perform_analysis', False))
ttk.Checkbutton(indvscons_frame, text="Perform INDvsCONS Analysis", variable=self.indvscons_analysis).grid(row=0, column=0, sticky='w')
def run_script(self):
# Collect parameters from the GUI
filters_selected = {name: value.get() for name, value in self.selected_filters.items() if value.get()}
processing_selected = {name: path.get() for name, path in self.processing_paths.items() if self.processing_vars[name].get() == 1}
config = {
"Parameters": {
"output_dir": self.output_dir.get(),
"info_path": self.info_path.get(),
"data_dir": self.data_dir.get(),
"scale": self.scale.get(),
"metric": self.metric.get(),
"filters": filters_selected,
"processing": processing_selected,
"load_dataset": self.load_dataset.get(),
},
"BIAS": {
"perform_analysis": self.bias_analysis.get(),
"DimReduc": self.dim_reduc.get(),
"colors_key": self.colors_key.get(),
},
"CONSENSUS": {
"perform_analysis": self.consensus_analysis.get(),
"nbins": self.nbins.get(),
},
"HARMONICS": {
"generate_harmonics": self.generate_harmonics.get(),
"compare_harmonics": self.compare_harmonics.get(),
"consensus": self.consensus_harmonics.get(),
},
"INDvsCONS": {
"perform_analysis": self.indvscons_analysis.get(),
},
}
# Call the main processing function with the config
self.run_processing_callback(config)