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<title>Python API — EOS 0.2.3 documentation</title>
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<div class="section" id="python-api">
<h1>Python API<a class="headerlink" href="#python-api" title="Permalink to this headline">¶</a></h1>
<div class="section" id="module-eos">
<h2>Module <code class="docutils literal notranslate"><span class="pre">eos</span></code><a class="headerlink" href="#module-eos" title="Permalink to this headline">¶</a></h2>
<dl class="class">
<dt id="eos.Analysis">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">Analysis</code><span class="sig-paren">(</span><em class="sig-param">priors</em>, <em class="sig-param">likelihood</em>, <em class="sig-param">global_options=None</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.Analysis" title="Permalink to this definition">¶</a></dt>
<dd><p>Represents a statistical analysis.</p>
<p>Describes a Bayesian analysis in terms of a set of parameters, a log(likelihood),
and a set containing one or more log(prior)s.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>global_options</strong> (<em>dict</em><em>, </em><em>optional</em>) – The options as (key, value) pairs that shall be forwarded to all theory predictions.</p></li>
<li><p><strong>priors</strong> (<em>iterable</em>) – The priors for this analysis as a list of prior descriptions. See :ref priors: for what consitutes a valid prior description.</p></li>
<li><p><strong>likelihood</strong> (<em>iterable</em>) – The likelihood as a list of individual constraints from the internal data base of experimental and theoretical constraints. See :ref constraints: for a complete list of constraints.</p></li>
</ul>
</dd>
</dl>
<dl class="method">
<dt id="eos.Analysis.goodness_of_fit">
<code class="sig-name descname">goodness_of_fit</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.Analysis.goodness_of_fit" title="Permalink to this definition">¶</a></dt>
<dd><p>Returns a goodness-of-fit summary for the current parameter point.</p>
</dd></dl>
<dl class="method">
<dt id="eos.Analysis.log_pdf">
<code class="sig-name descname">log_pdf</code><span class="sig-paren">(</span><em class="sig-param">x</em>, <em class="sig-param">*args</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.Analysis.log_pdf" title="Permalink to this definition">¶</a></dt>
<dd><p>Adapter for use with external optimization software (e.g. pypmc) to aid when optimizing the log(posterior).</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>x</strong> (<em>iterable</em>) – Parameter point, with the elements in the same order as in eos.Analysis.varied_parameters.</p></li>
<li><p><strong>args</strong> (<em>optional</em>) – Dummy parameter (ignored)</p></li>
</ul>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.Analysis.negative_log_pdf">
<code class="sig-name descname">negative_log_pdf</code><span class="sig-paren">(</span><em class="sig-param">x</em>, <em class="sig-param">*args</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.Analysis.negative_log_pdf" title="Permalink to this definition">¶</a></dt>
<dd><p>Adapter for use with external optimization software (e.g. scipy.optimize.minimize) to aid when optimizing the log(posterior).</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>x</strong> (<em>iterable</em>) – Parameter point, with the elements in the same order as in eos.Analysis.varied_parameters.</p></li>
<li><p><strong>args</strong> (<em>optional</em>) – Dummy parameter (ignored)</p></li>
</ul>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.Analysis.optimize">
<code class="sig-name descname">optimize</code><span class="sig-paren">(</span><em class="sig-param">start_point=None</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.Analysis.optimize" title="Permalink to this definition">¶</a></dt>
<dd><p>Optimize the log(posterior) and returns a best-fit-point summary.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>start_point</strong> – Parameter point from which to start the optimization, with the elements in the same order as in eos.Analysis.varied_parameters. If not specified, optimization starts at the current parameter point.</p></li>
<li><p><strong>start_point</strong> – iterable, optional</p></li>
</ul>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.BestFitPoint">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">BestFitPoint</code><span class="sig-paren">(</span><em class="sig-param">analysis</em>, <em class="sig-param">point</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.BestFitPoint" title="Permalink to this definition">¶</a></dt>
<dd><p>Represents the best-fit point of a Bayesian analysis undertaken with the eos.Analysis class.</p>
</dd></dl>
<dl class="class">
<dt id="eos.GoodnessOfFit">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">GoodnessOfFit</code><a class="headerlink" href="#eos.GoodnessOfFit" title="Permalink to this definition">¶</a></dt>
<dd><dl class="method">
<dt id="eos.GoodnessOfFit.total_chi_square">
<code class="sig-name descname">total_chi_square</code><span class="sig-paren">(</span><em class="sig-param">(GoodnessOfFit)arg1</em><span class="sig-paren">)</span> → float :<a class="headerlink" href="#eos.GoodnessOfFit.total_chi_square" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>double total_chi_square(eos::GoodnessOfFit {lvalue})</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.GoodnessOfFit.total_degrees_of_freedom">
<code class="sig-name descname">total_degrees_of_freedom</code><span class="sig-paren">(</span><em class="sig-param">(GoodnessOfFit)arg1</em><span class="sig-paren">)</span> → int :<a class="headerlink" href="#eos.GoodnessOfFit.total_degrees_of_freedom" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>int total_degrees_of_freedom(eos::GoodnessOfFit {lvalue})</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.Observable">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">Observable</code><a class="headerlink" href="#eos.Observable" title="Permalink to this definition">¶</a></dt>
<dd><dl class="method">
<dt id="eos.Observable.evaluate">
<code class="sig-name descname">evaluate</code><span class="sig-paren">(</span><em class="sig-param">(Observable)arg1</em><span class="sig-paren">)</span> → float :<a class="headerlink" href="#eos.Observable.evaluate" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>double evaluate(eos::Observable {lvalue})</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.Observable.make">
<em class="property">static </em><code class="sig-name descname">make</code><span class="sig-paren">(</span><em class="sig-param">(QualifiedName)arg1</em>, <em class="sig-param">(_Parameters)arg2</em>, <em class="sig-param">(Kinematics)arg3</em>, <em class="sig-param">(Options)arg4</em><span class="sig-paren">)</span> → Observable :<a class="headerlink" href="#eos.Observable.make" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>std::shared_ptr<eos::Observable> make(eos::QualifiedName,eos::Parameters,eos::Kinematics,eos::Options)</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.Observable.name">
<code class="sig-name descname">name</code><span class="sig-paren">(</span><em class="sig-param">(Observable)arg1</em><span class="sig-paren">)</span> → QualifiedName :<a class="headerlink" href="#eos.Observable.name" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>eos::QualifiedName name(eos::Observable {lvalue})</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.Observable.options">
<code class="sig-name descname">options</code><span class="sig-paren">(</span><em class="sig-param">(Observable)arg1</em><span class="sig-paren">)</span> → Options :<a class="headerlink" href="#eos.Observable.options" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>eos::Options options(eos::Observable {lvalue})</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.Observables">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">Observables</code><span class="sig-paren">(</span><em class="sig-param">prefix=None</em>, <em class="sig-param">name=None</em>, <em class="sig-param">suffix=None</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.Observables" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="class">
<dt id="eos.QualifiedName">
<em class="property">class </em><code class="sig-prename descclassname">eos.</code><code class="sig-name descname">QualifiedName</code><a class="headerlink" href="#eos.QualifiedName" title="Permalink to this definition">¶</a></dt>
<dd><dl class="method">
<dt id="eos.QualifiedName.name_part">
<code class="sig-name descname">name_part</code><span class="sig-paren">(</span><em class="sig-param">(QualifiedName)arg1</em><span class="sig-paren">)</span> → qnpName :<a class="headerlink" href="#eos.QualifiedName.name_part" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>eos::qnp::Name name_part(eos::QualifiedName {lvalue})</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.QualifiedName.prefix_part">
<code class="sig-name descname">prefix_part</code><span class="sig-paren">(</span><em class="sig-param">(QualifiedName)arg1</em><span class="sig-paren">)</span> → qnpPrefix :<a class="headerlink" href="#eos.QualifiedName.prefix_part" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>eos::qnp::Prefix prefix_part(eos::QualifiedName {lvalue})</p>
</dd>
</dl>
</dd></dl>
<dl class="method">
<dt id="eos.QualifiedName.suffix_part">
<code class="sig-name descname">suffix_part</code><span class="sig-paren">(</span><em class="sig-param">(QualifiedName)arg1</em><span class="sig-paren">)</span> → qnpSuffix :<a class="headerlink" href="#eos.QualifiedName.suffix_part" title="Permalink to this definition">¶</a></dt>
<dd><dl class="simple">
<dt>C++ signature :</dt><dd><p>eos::qnp::Suffix suffix_part(eos::QualifiedName {lvalue})</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
</div>
<div class="section" id="module-eos-plot">
<h2>Module <code class="docutils literal notranslate"><span class="pre">eos.plot</span></code><a class="headerlink" href="#module-eos-plot" title="Permalink to this headline">¶</a></h2>
<dl class="class">
<dt id="eos.plot.Plotter">
<em class="property">class </em><code class="sig-prename descclassname">eos.plot.</code><code class="sig-name descname">Plotter</code><span class="sig-paren">(</span><em class="sig-param">instructions</em>, <em class="sig-param">output=None</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
<dl class="class">
<dt id="eos.plot.Plotter.BasePlot">
<em class="property">class </em><code class="sig-name descname">BasePlot</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.BasePlot" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Constraint">
<em class="property">class </em><code class="sig-name descname">Constraint</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Constraint" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Constraint.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Constraint.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Contours2D">
<em class="property">class </em><code class="sig-name descname">Contours2D</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Contours2D" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Contours2D.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Contours2D.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Expression">
<em class="property">class </em><code class="sig-name descname">Expression</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Expression" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Expression.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Expression.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Histogram1D">
<em class="property">class </em><code class="sig-name descname">Histogram1D</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Histogram1D" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Histogram1D.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Histogram1D.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Histogram2D">
<em class="property">class </em><code class="sig-name descname">Histogram2D</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Histogram2D" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Histogram2D.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Histogram2D.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.KernelDensityEstimate1D">
<em class="property">class </em><code class="sig-name descname">KernelDensityEstimate1D</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.KernelDensityEstimate1D" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.KernelDensityEstimate1D.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.KernelDensityEstimate1D.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.KernelDensityEstimate2D">
<em class="property">class </em><code class="sig-name descname">KernelDensityEstimate2D</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.KernelDensityEstimate2D" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.KernelDensityEstimate2D.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.KernelDensityEstimate2D.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Observable">
<em class="property">class </em><code class="sig-name descname">Observable</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Observable" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Observable.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Observable.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Uncertainty">
<em class="property">class </em><code class="sig-name descname">Uncertainty</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Uncertainty" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Uncertainty.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Uncertainty.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.UncertaintyBinned">
<em class="property">class </em><code class="sig-name descname">UncertaintyBinned</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.UncertaintyBinned" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.UncertaintyBinned.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.UncertaintyBinned.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="class">
<dt id="eos.plot.Plotter.Watermark">
<em class="property">class </em><code class="sig-name descname">Watermark</code><span class="sig-paren">(</span><em class="sig-param">plotter</em>, <em class="sig-param">item</em><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Watermark" title="Permalink to this definition">¶</a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">eos.plot.plotter.BasePlot</span></code></p>
<dl class="method">
<dt id="eos.plot.Plotter.Watermark.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.Watermark.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
<dl class="method">
<dt id="eos.plot.Plotter.next_color">
<em class="property">property </em><code class="sig-name descname">next_color</code><a class="headerlink" href="#eos.plot.Plotter.next_color" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="eos.plot.Plotter.next_z_order">
<em class="property">property </em><code class="sig-name descname">next_z_order</code><a class="headerlink" href="#eos.plot.Plotter.next_z_order" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="eos.plot.Plotter.plot">
<code class="sig-name descname">plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="eos.plot.Plotter.plot_contents">
<code class="sig-name descname">plot_contents</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.plot_contents" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
<dl class="method">
<dt id="eos.plot.Plotter.setup_plot">
<code class="sig-name descname">setup_plot</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#eos.plot.Plotter.setup_plot" title="Permalink to this definition">¶</a></dt>
<dd></dd></dl>
</dd></dl>
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