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Align reduces family if --realign #64

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epruesse opened this issue Mar 23, 2019 · 0 comments
Open

Align reduces family if --realign #64

epruesse opened this issue Mar 23, 2019 · 0 comments

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@epruesse
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Realign requires that no reference sequences containing the query be used. This is checked in align right now, which means that the reference set gets smaller. It should be done in famfinder - probably actually as "leave-query-out".
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@epruesse