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Limit max memory #87

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epruesse opened this issue Apr 6, 2020 · 1 comment
Open

Limit max memory #87

epruesse opened this issue Apr 6, 2020 · 1 comment
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1.8.0

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@epruesse
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epruesse commented Apr 6, 2020

With large reference databases, the reference sequence cache can grow over time to lead to a late crash during execution. Allow specifying --max-mem.

  • Make sequence cache an LRU cache
  • Compute total mem usage:
    • index
    • cache
    • matrix
    • rest
  • Limit threads?
@epruesse epruesse added this to the 1.7.0 milestone Apr 6, 2020
@epruesse
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epruesse commented Apr 6, 2020 •
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Would fix the problem reported in #74

@epruesse epruesse mentioned this issue Jul 31, 2020
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@epruesse epruesse modified the milestones: 1.7.0, 1.8.0 Aug 16, 2020
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