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Avoidance of double execution of ERNE filter does not work. #2

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erikrikarddaniel opened this issue Nov 4, 2016 · 0 comments
Open

Avoidance of double execution of ERNE filter does not work. #2

erikrikarddaniel opened this issue Nov 4, 2016 · 0 comments
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@erikrikarddaniel
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The fastq.gzs2erne-filters target in makefile.erne builds a list of dependencies to automatically execute ERNE-filter once in the current directory for a certain database. After the first run, however, execution of the target will run ERNE again on all samples. I have tried to filter-out targets with the expected names so that they do not appear again, but it doesn't work yet.
erikrikarddaniel pushed a commit that referenced this issue Mar 29, 2018
@DiegoBrambilla
Merge pull request #2 from erikrikarddaniel/master
cd98f29 
Update my fork with Daniel's repository again
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