diff --git a/deenurp/wrap.py b/deenurp/wrap.py index 56252fd..c0118bd 100644 --- a/deenurp/wrap.py +++ b/deenurp/wrap.py @@ -189,7 +189,7 @@ def rppr_min_adcl_tree(newick_file, leaves, algorithm='pam', always_include=None if always_include: cmd.extend(('--always-include', always_include)) logging.debug(' '.join(cmd)) - output = subprocess.check_output(cmd) + output = subprocess.check_output(cmd, text=True) return output.splitlines()