Analysis-of-Transmission-Electron-Microscope-Data

This is a book which consists of a collection of jupyter notebooks.

The content is based on the notebooks I used for my Lecture MSE672: Introduction to Transmission Electron Microscopy in Fall 2018.

The topic of the book is how to analyze electron microscopy data.

Please start with the notebook _Analysis_of_Transmission_Electron_Microscope_Data.ipynb which contains the Outline and the basic usage of this book. The notebooks are however rather self-contained and can be accessed in any order.

However, CH1-Prerequesites.ipynb is a notebook that let's you install and test all the necessary packages.

In CH1_pyUSID.ipynb you will get familiar with the data format.

For usage at your computer you'll have to download the whole repostory onto your computer and start the jupyter notebook server.

I use annaconda3 for the installation of python and the jupter notebook server, but any other configuration works equally well.

Have fun,

Gerd

Name		Name	Last commit message	Last commit date
Latest commit History 79 Commits
.ipynb_checkpoints		.ipynb_checkpoints
data		data
example_data		example_data
images		images
CH1-InstallwithGithub.ipynb		CH1-InstallwithGithub.ipynb
CH1-Introduction_Python.ipynb		CH1-Introduction_Python.ipynb
CH1-Prerequesites.ipynb		CH1-Prerequesites.ipynb
CH1-PyUSID.ipynb		CH1-PyUSID.ipynb
CH2-Atomic_Form_Factor.ipynb		CH2-Atomic_Form_Factor.ipynb
CH2-Basic_Crystallography-Copy1.ipynb		CH2-Basic_Crystallography-Copy1.ipynb
CH2-Basic_Crystallography.ipynb		CH2-Basic_Crystallography.ipynb
CH2-Diffraction-Rings.ipynb		CH2-Diffraction-Rings.ipynb
CH2-Electron.ipynb		CH2-Electron.ipynb
CH2-Kikuchi_Lines.ipynb		CH2-Kikuchi_Lines.ipynb
CH2-Kinematic Scattering Geometry.ipynb		CH2-Kinematic Scattering Geometry.ipynb
CH2-Plotting_Diffraction_Pattern.ipynb		CH2-Plotting_Diffraction_Pattern.ipynb
CH2-Spot_Diffraction_Pattern.ipynb		CH2-Spot_Diffraction_Pattern.ipynb
CH2-Structure_Factors.ipynb		CH2-Structure_Factors.ipynb
CH3-CTF.ipynb		CH3-CTF.ipynb
CH3-Find_Atoms.ipynb		CH3-Find_Atoms.ipynb
CH3-ImageAnalysis-Copy1.ipynb		CH3-ImageAnalysis-Copy1.ipynb
CH3-ImageAnalysis.ipynb		CH3-ImageAnalysis.ipynb
CH3-ImageFormation_SEM.ipynb		CH3-ImageFormation_SEM.ipynb
CH3-ImageProcessing.ipynb		CH3-ImageProcessing.ipynb
CH3-Image_Registration-Copy1.ipynb		CH3-Image_Registration-Copy1.ipynb
CH3-Image_Registration.ipynb		CH3-Image_Registration.ipynb
CH3-Imaging.ipynb		CH3-Imaging.ipynb
CH3-Resolution.ipynb		CH3-Resolution.ipynb
CH4-Analysis_Core_Loss.ipynb		CH4-Analysis_Core_Loss.ipynb
CH4-Analysis_Spectrum_Images-CL.ipynb		CH4-Analysis_Spectrum_Images-CL.ipynb
CH4-Analysis_Spectrum_Images-CL2.ipynb		CH4-Analysis_Spectrum_Images-CL2.ipynb
CH4-Analysis_Spectrum_Images-LL.ipynb		CH4-Analysis_Spectrum_Images-LL.ipynb
CH4-Analysis_Spectrum_Images.ipynb		CH4-Analysis_Spectrum_Images.ipynb
CH4-Chemical_Composition.ipynb		CH4-Chemical_Composition.ipynb
CH4-Dielectric Function.ipynb		CH4-Dielectric Function.ipynb
CH4-Drude-Lorentz.ipynb		CH4-Drude-Lorentz.ipynb
CH4-DrudeLL-Copy1.ipynb		CH4-DrudeLL-Copy1.ipynb
CH4-DrudeLL.ipynb		CH4-DrudeLL.ipynb
CH4-FitZeroLoss.ipynb		CH4-FitZeroLoss.ipynb
CH4-LoadEELS.ipynb		CH4-LoadEELS.ipynb
CH4-Spectroscopy.ipynb		CH4-Spectroscopy.ipynb
CH4-Working_with_Spectrum_Images.ipynb		CH4-Working_with_Spectrum_Images.ipynb
CH4-Working_with_X-Sections.ipynb		CH4-Working_with_X-Sections.ipynb
Ch2-_Diffraction.ipynb		Ch2-_Diffraction.ipynb
Ch3-ImageProcessing-SEM.ipynb		Ch3-ImageProcessing-SEM.ipynb
Ch4-Dielectric_Function.ipynb		Ch4-Dielectric_Function.ipynb
Ch4-Dielectric_Theory.ipynb		Ch4-Dielectric_Theory.ipynb
DielectricDFT2.ipynb		DielectricDFT2.ipynb
DielectricFunction.ipynb		DielectricFunction.ipynb
EELS Spectrum ImageFeAgA-1.hf5		EELS Spectrum ImageFeAgA-1.hf5
EELS_tools.py		EELS_tools.py
Optics.ipynb		Optics.ipynb
README.md		README.md
Untitled.ipynb		Untitled.ipynb
Untitled1.ipynb		Untitled1.ipynb
Untitled2.ipynb		Untitled2.ipynb
Untitled3.ipynb		Untitled3.ipynb
_Analysis_of_Transmission_Electron_Microscope_Data.ipynb		_Analysis_of_Transmission_Electron_Microscope_Data.ipynb
file_tools.py		file_tools.py
read_POSCAR.py		read_POSCAR.py

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