From c437fdd92483f994f08c91f0e46deff7fd97ce1f Mon Sep 17 00:00:00 2001
From: ryanjameskennedy <ryanjameskennedy@icloud.com>
Date: Fri, 13 Oct 2023 14:10:26 +0200
Subject: [PATCH 1/2] Add chewBBACA sparse-checkout submodule for ptf

---
 .gitmodules      | 5 +++++
 assets/chewBBACA | 1 +
 2 files changed, 6 insertions(+)
 create mode 160000 assets/chewBBACA

diff --git a/.gitmodules b/.gitmodules
index 48b0f753..eea75c3d 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -13,3 +13,8 @@
 [submodule "assets/kma"]
 	path = assets/kma
 	url = https://bitbucket.org/genomicepidemiology/kma.git
+[submodule "assets/chewBBACA"]
+	path = assets/chewBBACA
+	url = ./assets/chewBBACA/
+	sparsecheckout = true
+	shallow = true
diff --git a/assets/chewBBACA b/assets/chewBBACA
new file mode 160000
index 00000000..0c42f249
--- /dev/null
+++ b/assets/chewBBACA
@@ -0,0 +1 @@
+Subproject commit 0c42f249bc5419e04098ac1a5e97621683147789

From 6eda64b42a6444be0660493b2b1e2049c3d59cd1 Mon Sep 17 00:00:00 2001
From: ryanjameskennedy <ryanjameskennedy@icloud.com>
Date: Fri, 13 Oct 2023 14:19:00 +0200
Subject: [PATCH 2/2] Fix chewBBACA submodule .git

---
 assets/chewBBACA | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/assets/chewBBACA b/assets/chewBBACA
index 0c42f249..9544055c 160000
--- a/assets/chewBBACA
+++ b/assets/chewBBACA
@@ -1 +1 @@
-Subproject commit 0c42f249bc5419e04098ac1a5e97621683147789
+Subproject commit 9544055c05b0ec00d4d5da154cf8c7c50cd75712