diff --git a/.github/workflows/python-core-wheels.yml b/.github/workflows/python-core-wheels.yml index d30c9134a..18eb2ddd8 100644 --- a/.github/workflows/python-core-wheels.yml +++ b/.github/workflows/python-core-wheels.yml @@ -1,276 +1,213 @@ -name: Python (Core) Wheels +# This file is autogenerated by maturin v1.7.1 +# To update, run +# +# maturin generate-ci -m python/geoarrow-core/Cargo.toml --platform all -o tmp.yml github +# +name: Python wheels (core) on: push: + branches: + - main tags: - "py-v*" + workflow_dispatch: -concurrency: - group: ${{ github.workflow }}-${{ github.ref }} - cancel-in-progress: true +permissions: + contents: read jobs: linux: - runs-on: ubuntu-latest + runs-on: ${{ matrix.platform.runner }} strategy: matrix: - target: [x86_64] + platform: + - runner: ubuntu-latest + target: x86_64 + - runner: ubuntu-latest + target: x86 + - runner: ubuntu-latest + target: aarch64 + - runner: ubuntu-latest + target: armv7 + - runner: ubuntu-latest + target: s390x + - runner: ubuntu-latest + target: ppc64le steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 with: - python-version: 3.8 - architecture: x64 - + python-version: 3.x - name: Build wheels uses: PyO3/maturin-action@v1 with: - target: ${{ matrix.target }} - manylinux: manylinux_2_28 - args: --release --out dist -m python/core/Cargo.toml - before-script-linux: | - yum update -y - yum install openssl openssl-devel perl-IPC-Cmd -y - - - name: Install built wheel - if: matrix.target == 'x86_64' - run: | - pip install geoarrow-rust-core --no-index --find-links dist --force-reinstall - python -c "import geoarrow.rust.core" - - # Have to set path from root - # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 + target: ${{ matrix.platform.target }} + args: --release --out dist --manifest-path python/geoarrow-core/Cargo.toml + sccache: "true" + manylinux: auto - name: Upload wheels - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: - name: wheels - path: dist/*.whl - - # linux-cross: - # runs-on: ubuntu-latest - # strategy: - # matrix: - # target: [aarch64, armv7, s390x, ppc64le, ppc64] - # steps: - # - uses: actions/checkout@v4 - # - uses: actions/setup-python@v4 - # with: - # python-version: 3.8 - - # - name: Build wheels - # uses: PyO3/maturin-action@v1 - # with: - # target: ${{ matrix.target }} - # manylinux: auto - # args: --release --out dist -m python/core/Cargo.toml - - # # This is currently failing with - # # python: command not found - - # # - uses: uraimo/run-on-arch-action@v2.5.1 - # # if: matrix.target == 'aarch64' - # # name: Install built wheel - # # with: - # # arch: ${{ matrix.target }} - # # distro: ubuntu20.04 - # # githubToken: ${{ github.token }} - # # install: | - # # apt-get update - # # apt-get install -y --no-install-recommends python3 python3-pip - # # pip3 install -U pip - # # run: | - # # pip install geoarrow-rust-core --no-index --find-links dist --force-reinstall - # # python -c "import geoarrow.rust.core" - - # # Have to set path from root - # # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 - # - name: Upload wheels - # uses: actions/upload-artifact@v3 - # with: - # name: wheels - # path: dist/*.whl + name: wheels-linux-${{ matrix.platform.target }} + path: dist - macos: - name: Build ${{ matrix.arch }} wheels on ${{ matrix.os }} + musllinux: + runs-on: ${{ matrix.platform.runner }} strategy: - fail-fast: false matrix: - include: - - os: macos-11 - arch: x86_64 + platform: + - runner: ubuntu-latest target: x86_64 - python-version: 3.8 - - os: macos-14 - arch: arm64 + - runner: ubuntu-latest + target: x86 + - runner: ubuntu-latest target: aarch64 - # Earliest python version on Github for macos arm64 - # https://raw.githubusercontent.com/actions/python-versions/main/versions-manifest.json - python-version: 3.11.3 - runs-on: ${{ matrix.os }} + - runner: ubuntu-latest + target: armv7 steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 with: - python-version: ${{ matrix.python-version }} - - - uses: dtolnay/rust-toolchain@stable - - - name: Build wheels - ${{ matrix.target }} + python-version: 3.x + - name: Build wheels uses: PyO3/maturin-action@v1 with: - target: ${{ matrix.target }} - args: --release --out dist --sdist -m python/core/Cargo.toml - - - name: Install built wheel - ${{ matrix.target }} - run: | - pip install geoarrow-rust-core --no-index --find-links dist --force-reinstall - python -c "import geoarrow.rust.core" - - # Have to set path from root - # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 + target: ${{ matrix.platform.target }} + args: --release --out dist --manifest-path python/geoarrow-core/Cargo.toml + sccache: "true" + manylinux: musllinux_1_2 - name: Upload wheels - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: - name: wheels + name: wheels-musllinux-${{ matrix.platform.target }} path: dist windows: - runs-on: windows-latest + runs-on: ${{ matrix.platform.runner }} strategy: matrix: - target: [x64, x86] + platform: + - runner: windows-latest + target: x64 + - runner: windows-latest + target: x86 steps: - uses: actions/checkout@v4 - - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 with: - python-version: 3.8 - architecture: ${{ matrix.target }} - - - uses: dtolnay/rust-toolchain@stable + python-version: 3.x + architecture: ${{ matrix.platform.target }} + - name: Build wheels + uses: PyO3/maturin-action@v1 + with: + target: ${{ matrix.platform.target }} + args: --release --out dist --manifest-path python/geoarrow-core/Cargo.toml + sccache: "true" + - name: Upload wheels + uses: actions/upload-artifact@v4 + with: + name: wheels-windows-${{ matrix.platform.target }} + path: dist + macos: + runs-on: ${{ matrix.platform.runner }} + strategy: + matrix: + platform: + - runner: macos-12 + target: x86_64 + - runner: macos-14 + target: aarch64 + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: 3.x - name: Build wheels uses: PyO3/maturin-action@v1 with: - target: ${{ matrix.target }} - args: --release --out dist -m python/core/Cargo.toml + target: ${{ matrix.platform.target }} + args: --release --out dist --manifest-path python/geoarrow-core/Cargo.toml + sccache: "true" + - name: Upload wheels + uses: actions/upload-artifact@v4 + with: + name: wheels-macos-${{ matrix.platform.target }} + path: dist - - name: Install built wheel + emscripten: + runs-on: ${{ matrix.platform.runner }} + strategy: + matrix: + platform: + - runner: ubuntu-latest + target: wasm32-unknown-emscripten + steps: + - uses: actions/checkout@v4 + - run: pip install pyodide-build + - name: Get Emscripten and Python version info + shell: bash run: | - pip install geoarrow-rust-core --no-index --find-links dist --force-reinstall - python -c "import geoarrow.rust.core" - + echo EMSCRIPTEN_VERSION=$(pyodide config get emscripten_version) >> $GITHUB_ENV + echo PYTHON_VERSION=$(pyodide config get python_version | cut -d '.' -f 1-2) >> $GITHUB_ENV + pip uninstall -y pyodide-build + - uses: mymindstorm/setup-emsdk@v12 + with: + version: ${{ env.EMSCRIPTEN_VERSION }} + actions-cache-folder: emsdk-cache + - uses: actions/setup-python@v5 + with: + python-version: ${{ env.PYTHON_VERSION }} + - run: pip install pyodide-build + - name: Build wheels + uses: PyO3/maturin-action@v1 + with: + target: ${{ matrix.platform.target }} + args: --release --out dist --manifest-path python/geoarrow-core/Cargo.toml + sccache: "true" + rust-toolchain: nightly - name: Upload wheels - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: - name: wheels - path: dist/*.whl - - # NOTE: musllinux builds are commented out because importing them failed with: - # ImportError: Error loading shared library libgcc_s-60abea67.so.1: No such file or directory - - # musllinux: - # runs-on: ubuntu-latest - # strategy: - # matrix: - # target: - # - x86_64-unknown-linux-musl - # - i686-unknown-linux-musl - # steps: - # - uses: actions/checkout@v4 - # - uses: actions/setup-python@v4 - # with: - # python-version: 3.8 - # architecture: x64 - - # - name: Build wheels - # uses: PyO3/maturin-action@v1 - # with: - # target: ${{ matrix.target }} - # manylinux: musllinux_1_2 - # args: --release --out dist -m python/core/Cargo.toml - - # - name: Install built wheel - # if: matrix.target == 'x86_64-unknown-linux-musl' - # uses: addnab/docker-run-action@v3 - # with: - # image: alpine:latest - # options: -v ${{ github.workspace }}:/io -w /io - # run: | - # apk add py3-pip - # pip3 install -U pip - # pip3 install geoarrow-rust-core --no-index --find-links /io/dist/ --force-reinstall - # python3 -c "import geoarrow.rust.core" - - # - name: Upload wheels - # uses: actions/upload-artifact@v3 - # with: - # name: wheels - # path: dist - - # musllinux-cross: - # runs-on: ubuntu-latest - # strategy: - # matrix: - # platform: - # - target: aarch64-unknown-linux-musl - # arch: aarch64 - # - target: armv7-unknown-linux-musleabihf - # arch: armv7 - - # steps: - # - uses: actions/checkout@v4 - - # - uses: actions/setup-python@v4 - # with: - # python-version: 3.8 - - # - name: Build wheels - # uses: PyO3/maturin-action@v1 - # with: - # target: ${{ matrix.platform.target }} - # manylinux: musllinux_1_2 - # args: --release --out dist -m python/core/Cargo.toml - - # - uses: uraimo/run-on-arch-action@v2.5.1 - # name: Install built wheel - # with: - # arch: ${{ matrix.platform.arch }} - # distro: alpine_latest - # githubToken: ${{ github.token }} - # install: | - # apk add py3-pip - # pip3 install -U pip - # run: | - # pip3 install geoarrow-rust-core --no-index --find-links dist/ --force-reinstall - # python3 -c "import geoarrow.rust.core" + name: wasm-wheels + path: dist - # - name: Upload wheels - # uses: actions/upload-artifact@v3 - # with: - # name: wheels - # path: dist + sdist: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - name: Build sdist + uses: PyO3/maturin-action@v1 + with: + command: sdist + args: --out dist --manifest-path python/geoarrow-core/Cargo.toml + - name: Upload sdist + uses: actions/upload-artifact@v4 + with: + name: wheels-sdist + path: dist release: name: Release - environment: - name: release - url: https://pypi.org/p/geoarrow-rust-core - permissions: - # IMPORTANT: this permission is mandatory for trusted publishing - id-token: write runs-on: ubuntu-latest - if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') - needs: [macos, windows, linux] + if: "startsWith(github.ref, 'refs/tags/')" + needs: [linux, musllinux, windows, macos, emscripten, sdist] + permissions: + # Used to upload release artifacts + contents: write steps: - - uses: actions/download-artifact@v3 + - uses: actions/download-artifact@v4 + - name: Publish to PyPI + uses: PyO3/maturin-action@v1 + env: + MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }} with: - name: wheels - path: dist - - - uses: actions/setup-python@v4 + command: upload + args: --non-interactive --skip-existing wheels-*/* + - name: Upload to GitHub Release + uses: softprops/action-gh-release@v1 with: - python-version: 3.8 - - - name: Publish package distributions to PyPI - uses: pypa/gh-action-pypi-publish@release/v1 + files: | + wasm-wheels/*.whl + prerelease: ${{ contains(github.ref, 'alpha') || contains(github.ref, 'beta') }} diff --git a/.github/workflows/python-io-wheels.yml b/.github/workflows/python-io-wheels.yml new file mode 100644 index 000000000..33f5d5894 --- /dev/null +++ b/.github/workflows/python-io-wheels.yml @@ -0,0 +1,277 @@ +name: Python Wheels (IO) + +on: + push: + tags: + - "py-v*" + workflow_dispatch: + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + linux: + runs-on: ubuntu-latest + strategy: + matrix: + target: [x86_64] + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v4 + with: + python-version: 3.8 + architecture: x64 + + - name: Build wheels + uses: PyO3/maturin-action@v1 + with: + target: ${{ matrix.target }} + manylinux: manylinux_2_28 + args: --release --out dist -m python/geoarrow-io/Cargo.toml + before-script-linux: | + yum update -y + yum install openssl openssl-devel perl-IPC-Cmd -y + + - name: Install built wheel + if: matrix.target == 'x86_64' + run: | + pip install geoarrow-rust-io --no-index --find-links dist --force-reinstall + python -c "import geoarrow.rust.io" + + # Have to set path from root + # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 + - name: Upload wheels + uses: actions/upload-artifact@v3 + with: + name: wheels + path: dist/*.whl + + # linux-cross: + # runs-on: ubuntu-latest + # strategy: + # matrix: + # target: [aarch64, armv7, s390x, ppc64le, ppc64] + # steps: + # - uses: actions/checkout@v4 + # - uses: actions/setup-python@v4 + # with: + # python-version: 3.8 + + # - name: Build wheels + # uses: PyO3/maturin-action@v1 + # with: + # target: ${{ matrix.target }} + # manylinux: auto + # args: --release --out dist -m python/geoarrow-io/Cargo.toml + + # # This is currently failing with + # # python: command not found + + # # - uses: uraimo/run-on-arch-action@v2.5.1 + # # if: matrix.target == 'aarch64' + # # name: Install built wheel + # # with: + # # arch: ${{ matrix.target }} + # # distro: ubuntu20.04 + # # githubToken: ${{ github.token }} + # # install: | + # # apt-get update + # # apt-get install -y --no-install-recommends python3 python3-pip + # # pip3 install -U pip + # # run: | + # # pip install geoarrow-rust-io --no-index --find-links dist --force-reinstall + # # python -c "import geoarrow.rust.io" + + # # Have to set path from root + # # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 + # - name: Upload wheels + # uses: actions/upload-artifact@v3 + # with: + # name: wheels + # path: dist/*.whl + + macos: + name: Build ${{ matrix.arch }} wheels on ${{ matrix.os }} + strategy: + fail-fast: false + matrix: + include: + - os: macos-11 + arch: x86_64 + target: x86_64 + python-version: 3.8 + - os: macos-14 + arch: arm64 + target: aarch64 + # Earliest python version on Github for macos arm64 + # https://raw.githubusercontent.com/actions/python-versions/main/versions-manifest.json + python-version: 3.11.3 + runs-on: ${{ matrix.os }} + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v4 + with: + python-version: ${{ matrix.python-version }} + + - uses: dtolnay/rust-toolchain@stable + + - name: Build wheels - ${{ matrix.target }} + uses: PyO3/maturin-action@v1 + with: + target: ${{ matrix.target }} + args: --release --out dist --sdist -m python/geoarrow-io/Cargo.toml + + - name: Install built wheel - ${{ matrix.target }} + run: | + pip install geoarrow-rust-io --no-index --find-links dist --force-reinstall + python -c "import geoarrow.rust.io" + + # Have to set path from root + # https://github.com/actions/upload-artifact/issues/232#issuecomment-964235360 + - name: Upload wheels + uses: actions/upload-artifact@v3 + with: + name: wheels + path: dist + + windows: + runs-on: windows-latest + strategy: + matrix: + target: [x64, x86] + steps: + - uses: actions/checkout@v4 + + - uses: actions/setup-python@v4 + with: + python-version: 3.8 + architecture: ${{ matrix.target }} + + - uses: dtolnay/rust-toolchain@stable + + - name: Build wheels + uses: PyO3/maturin-action@v1 + with: + target: ${{ matrix.target }} + args: --release --out dist -m python/geoarrow-io/Cargo.toml + + - name: Install built wheel + run: | + pip install geoarrow-rust-io --no-index --find-links dist --force-reinstall + python -c "import geoarrow.rust.io" + + - name: Upload wheels + uses: actions/upload-artifact@v3 + with: + name: wheels + path: dist/*.whl + + # NOTE: musllinux builds are commented out because importing them failed with: + # ImportError: Error loading shared library libgcc_s-60abea67.so.1: No such file or directory + + # musllinux: + # runs-on: ubuntu-latest + # strategy: + # matrix: + # target: + # - x86_64-unknown-linux-musl + # - i686-unknown-linux-musl + # steps: + # - uses: actions/checkout@v4 + # - uses: actions/setup-python@v4 + # with: + # python-version: 3.8 + # architecture: x64 + + # - name: Build wheels + # uses: PyO3/maturin-action@v1 + # with: + # target: ${{ matrix.target }} + # manylinux: musllinux_1_2 + # args: --release --out dist -m python/geoarrow-io/Cargo.toml + + # - name: Install built wheel + # if: matrix.target == 'x86_64-unknown-linux-musl' + # uses: addnab/docker-run-action@v3 + # with: + # image: alpine:latest + # options: -v ${{ github.workspace }}:/io -w /io + # run: | + # apk add py3-pip + # pip3 install -U pip + # pip3 install geoarrow-rust-io --no-index --find-links /io/dist/ --force-reinstall + # python3 -c "import geoarrow.rust.io" + + # - name: Upload wheels + # uses: actions/upload-artifact@v3 + # with: + # name: wheels + # path: dist + + # musllinux-cross: + # runs-on: ubuntu-latest + # strategy: + # matrix: + # platform: + # - target: aarch64-unknown-linux-musl + # arch: aarch64 + # - target: armv7-unknown-linux-musleabihf + # arch: armv7 + + # steps: + # - uses: actions/checkout@v4 + + # - uses: actions/setup-python@v4 + # with: + # python-version: 3.8 + + # - name: Build wheels + # uses: PyO3/maturin-action@v1 + # with: + # target: ${{ matrix.platform.target }} + # manylinux: musllinux_1_2 + # args: --release --out dist -m python/geoarrow-io/Cargo.toml + + # - uses: uraimo/run-on-arch-action@v2.5.1 + # name: Install built wheel + # with: + # arch: ${{ matrix.platform.arch }} + # distro: alpine_latest + # githubToken: ${{ github.token }} + # install: | + # apk add py3-pip + # pip3 install -U pip + # run: | + # pip3 install geoarrow-rust-io --no-index --find-links dist/ --force-reinstall + # python3 -c "import geoarrow.rust.io" + + # - name: Upload wheels + # uses: actions/upload-artifact@v3 + # with: + # name: wheels + # path: dist + + release: + name: Release + environment: + name: release + url: https://pypi.org/p/geoarrow-rust-io + permissions: + # IMPORTANT: this permission is mandatory for trusted publishing + id-token: write + runs-on: ubuntu-latest + if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') + needs: [macos, windows, linux] + steps: + - uses: actions/download-artifact@v3 + with: + name: wheels + path: dist + + - uses: actions/setup-python@v4 + with: + python-version: 3.8 + + - name: Publish package distributions to PyPI + uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.github/workflows/python.yml b/.github/workflows/python.yml index 130e838db..4d66ba6dc 100644 --- a/.github/workflows/python.yml +++ b/.github/workflows/python.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest defaults: run: - working-directory: python/core + working-directory: python steps: - uses: actions/checkout@v4 with: @@ -55,11 +55,19 @@ jobs: with: python-version: ${{ env.PYTHON_VERSION }} - run: pip install pyodide-build - - name: Build wheels + + - name: Build wheels (core) uses: PyO3/maturin-action@v1 with: target: wasm32-unknown-emscripten - args: --no-default-features --out dist -m python/core/Cargo.toml + args: --no-default-features -m python/geoarrow-core/Cargo.toml + rust-toolchain: nightly + + - name: Build wheels (io) + uses: PyO3/maturin-action@v1 + with: + target: wasm32-unknown-emscripten + args: --no-default-features -m python/geoarrow-io/Cargo.toml rust-toolchain: nightly # lint-python: @@ -87,19 +95,23 @@ jobs: python-version: ["3.9", "3.12"] defaults: run: - working-directory: python/core + working-directory: python steps: - uses: actions/checkout@v4 with: submodules: "recursive" + - name: Install Rust uses: dtolnay/rust-toolchain@stable + - uses: Swatinem/rust-cache@v2 + - name: Set up Python id: setup-python uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} + - name: Install and configure Poetry uses: snok/install-poetry@v1 with: @@ -107,21 +119,32 @@ jobs: virtualenvs-create: true virtualenvs-in-project: true installer-parallel: true + - name: Check Poetry lockfile up to date run: | poetry check --lock + - name: Load cached venv id: cached-poetry-dependencies uses: actions/cache@v4 with: - path: python/core/.venv + path: .venv key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} + - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' run: poetry install --no-interaction --no-root + - name: Install root project run: poetry install --no-interaction + + - name: Build rust submodules + run: | + # Note: core module should be first, because it could be depended on + # by others in the future + poetry run maturin develop -m geoarrow-core/Cargo.toml + poetry run maturin develop -m geoarrow-io/Cargo.toml + - name: Run python tests run: | - poetry run maturin develop poetry run pytest tests diff --git a/CHANGELOG.md b/CHANGELOG.md index 632a28c9a..9b0f23588 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -**This is the changelog for the core Rust library**. There's a [separate changelog](./python/core/CHANGELOG.md) for the Python bindings, and there will be another for the JS bindings. +**This is the changelog for the core Rust library**. There's a [separate changelog](./python/CHANGELOG.md) for the Python bindings, and there will be another for the JS bindings. ## [0.3.0-beta.2] - 2024-08-23 diff --git a/README.md b/README.md index d420b3073..bc2dbb1cd 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ A Rust implementation of the [GeoArrow](https://github.com/geoarrow/geoarrow) specification and bindings to [GeoRust algorithms](https://github.com/georust/geo) for efficient spatial operations on GeoArrow memory. -This repository also includes [Python bindings](https://github.com/geoarrow/geoarrow-rs/blob/main/python/core/README.md) and [JavaScript (WebAssembly) bindings](https://github.com/geoarrow/geoarrow-rs/blob/main/js/README.md), wrapping the GeoArrow memory layout and offering vectorized geometry operations. +This repository also includes [Python bindings](https://github.com/geoarrow/geoarrow-rs/blob/main/python/README.md) and [JavaScript (WebAssembly) bindings](https://github.com/geoarrow/geoarrow-rs/blob/main/js/README.md), wrapping the GeoArrow memory layout and offering vectorized geometry operations. ## Documentation diff --git a/python/core/CHANGELOG.md b/python/CHANGELOG.md similarity index 100% rename from python/core/CHANGELOG.md rename to python/CHANGELOG.md diff --git a/python/core/Cargo.lock b/python/Cargo.lock similarity index 98% rename from python/core/Cargo.lock rename to python/Cargo.lock index cf16d6981..5d22f7879 100644 --- a/python/core/Cargo.lock +++ b/python/Cargo.lock @@ -336,18 +336,18 @@ checksum = "16e62a023e7c117e27523144c5d2459f4397fcc3cab0085af8e2224f643a0193" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] name = "async-trait" -version = "0.1.81" +version = "0.1.82" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "6e0c28dcc82d7c8ead5cb13beb15405b57b8546e93215673ff8ca0349a028107" +checksum = "a27b8a3a6e1a44fa4c8baf1f653e4172e81486d4941f2237e20dc2d0cf4ddff1" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -932,7 +932,7 @@ checksum = "87750cf4b7a4c0625b1529e4c543c2182106e4dedc60a2a6455e00d212c489ac" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -1063,13 +1063,27 @@ dependencies = [ "arrow", "arrow-array", "arrow-buffer", + "geo", + "geoarrow", + "geozero", + "numpy", + "pyo3", + "pyo3-arrow", + "serde_json", + "thiserror", + "url", +] + +[[package]] +name = "geoarrow-rust-io" +version = "0.3.0-alpha.1" +dependencies = [ + "arrow", "bytes", "flatgeobuf", "futures", "geo", "geoarrow", - "geozero", - "numpy", "object_store", "openssl", "parquet", @@ -1424,9 +1438,9 @@ dependencies = [ [[package]] name = "indexmap" -version = "2.4.0" +version = "2.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "93ead53efc7ea8ed3cfb0c79fc8023fbb782a5432b52830b6518941cebe6505c" +checksum = "68b900aa2f7301e21c36462b170ee99994de34dff39a4a6a528e80e7376d07e5" dependencies = [ "equivalent", "hashbrown", @@ -1845,7 +1859,7 @@ dependencies = [ "proc-macro-crate", "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -1866,9 +1880,9 @@ dependencies = [ [[package]] name = "object" -version = "0.36.3" +version = "0.36.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "27b64972346851a39438c60b341ebc01bba47464ae329e55cf343eb93964efd9" +checksum = "084f1a5821ac4c651660a94a7153d27ac9d8a53736203f58b31945ded098070a" dependencies = [ "memchr", ] @@ -1933,7 +1947,7 @@ checksum = "a948666b637a0f465e8564c73e89d4dde00d72d4d473cc972f390fc3dcee7d9c" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -1944,9 +1958,9 @@ checksum = "ff011a302c396a5197692431fc1948019154afc178baf7d8e37367442a4601cf" [[package]] name = "openssl-src" -version = "300.3.1+3.3.1" +version = "300.3.2+3.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7259953d42a81bf137fbbd73bd30a8e1914d6dce43c2b90ed575783a22608b91" +checksum = "a211a18d945ef7e648cc6e0058f4c548ee46aab922ea203e0d30e966ea23647b" dependencies = [ "cc", ] @@ -1991,7 +2005,7 @@ checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8" dependencies = [ "cfg-if", "libc", - "redox_syscall 0.5.3", + "redox_syscall", "smallvec", "windows-targets 0.52.6", ] @@ -2102,7 +2116,7 @@ dependencies = [ "phf_shared", "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -2131,7 +2145,7 @@ checksum = "2f38a4412a78282e09a2cf38d195ea5420d15ba0602cb375210efbc877243965" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -2297,7 +2311,7 @@ dependencies = [ "proc-macro2", "pyo3-macros-backend", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -2310,7 +2324,7 @@ dependencies = [ "proc-macro2", "pyo3-build-config", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -2335,9 +2349,9 @@ dependencies = [ [[package]] name = "quinn" -version = "0.11.3" +version = "0.11.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b22d8e7369034b9a7132bc2008cac12f2013c8132b45e0554e6e20e2617f2156" +checksum = "8c7c5fdde3cdae7203427dc4f0a68fe0ed09833edc525a03456b153b79828684" dependencies = [ "bytes", "pin-project-lite", @@ -2353,9 +2367,9 @@ dependencies = [ [[package]] name = "quinn-proto" -version = "0.11.6" +version = "0.11.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ba92fb39ec7ad06ca2582c0ca834dfeadcaf06ddfc8e635c80aa7e1c05315fdd" +checksum = "fadfaed2cd7f389d0161bb73eeb07b7b78f8691047a6f3e73caaeae55310a4a6" dependencies = [ "bytes", "rand", @@ -2370,15 +2384,15 @@ dependencies = [ [[package]] name = "quinn-udp" -version = "0.5.4" +version = "0.5.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8bffec3605b73c6f1754535084a85229fa8a30f86014e6c81aeec4abb68b0285" +checksum = "4fe68c2e9e1a1234e218683dbdf9f9dfcb094113c5ac2b938dfcb9bab4c4140b" dependencies = [ "libc", "once_cell", "socket2", "tracing", - "windows-sys 0.52.0", + "windows-sys 0.59.0", ] [[package]] @@ -2455,15 +2469,6 @@ dependencies = [ "log", ] -[[package]] -name = "redox_syscall" -version = "0.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4722d768eff46b75989dd134e5c353f0d6296e5aaa3132e776cbdb56be7731aa" -dependencies = [ - "bitflags 1.3.2", -] - [[package]] name = "redox_syscall" version = "0.5.3" @@ -2827,7 +2832,7 @@ checksum = "a5831b979fd7b5439637af1752d535ff49f4860c0f341d1baeb6faf0f4242170" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -3235,9 +3240,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.76" +version = "2.0.77" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "578e081a14e0cefc3279b0472138c513f37b41a08d5a3cca9b6e4e8ceb6cd525" +checksum = "9f35bcdf61fd8e7be6caf75f429fdca8beb3ed76584befb503b1569faee373ed" dependencies = [ "proc-macro2", "quote", @@ -3310,7 +3315,7 @@ checksum = "a4558b58466b9ad7ca0f102865eccc95938dca1a74a856f2b57b6629050da261" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -3350,9 +3355,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20" [[package]] name = "tokio" -version = "1.39.3" +version = "1.40.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9babc99b9923bfa4804bd74722ff02c0381021eafa4db9949217e3be8e84fff5" +checksum = "e2b070231665d27ad9ec9b8df639893f46727666c6767db40317fbe920a5d998" dependencies = [ "backtrace", "bytes", @@ -3372,7 +3377,7 @@ checksum = "693d596312e88961bc67d7f1f97af8a70227d9f90c31bba5806eec004978d752" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -3484,7 +3489,7 @@ checksum = "34704c8d6ebcbc939824180af020566b01a7c01f80641264eba0999f6c2b6be7" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] @@ -3651,7 +3656,7 @@ dependencies = [ "once_cell", "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", "wasm-bindgen-shared", ] @@ -3685,7 +3690,7 @@ checksum = "afc340c74d9005395cf9dd098506f7f44e38f2b4a21c6aaacf9a105ea5e1e836" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", "wasm-bindgen-backend", "wasm-bindgen-shared", ] @@ -3727,11 +3732,11 @@ checksum = "5f20c57d8d7db6d3b86154206ae5d8fba62dd39573114de97c2cb0578251f8e1" [[package]] name = "whoami" -version = "1.5.1" +version = "1.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a44ab49fad634e88f55bf8f9bb3abd2f27d7204172a112c7c9987e01c1c94ea9" +checksum = "372d5b87f58ec45c384ba03563b03544dc5fadc3983e434b286913f5b4a9bb6d" dependencies = [ - "redox_syscall 0.4.1", + "redox_syscall", "wasite", ] @@ -3970,7 +3975,7 @@ checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e" dependencies = [ "proc-macro2", "quote", - "syn 2.0.76", + "syn 2.0.77", ] [[package]] diff --git a/python/Cargo.toml b/python/Cargo.toml new file mode 100644 index 000000000..c959172f5 --- /dev/null +++ b/python/Cargo.toml @@ -0,0 +1,18 @@ +[workspace] +members = ["geoarrow-core", "geoarrow-io"] +resolver = "2" + +[workspace.dependencies] +arrow = "52" +arrow-array = "52" +arrow-buffer = "52" +geozero = "0.13" +pyo3 = { version = "0.21.0", features = [ + "abi3-py38", + "hashbrown", + "serde", + "anyhow", +] } +pyo3-arrow = "0.2" +serde_json = "1" +thiserror = "1" diff --git a/python/README.md b/python/README.md index 9eacb6f5d..d934acd91 100644 --- a/python/README.md +++ b/python/README.md @@ -9,8 +9,9 @@ This folder contains Python bindings to the [GeoArrow Rust implementation](https Modules so far: - [`core`](./core/README.md): All algorithms and data structures implemented in pure Rust without any C dependencies. Having a pure Rust dependency tree means it's trivial to build binary wheels for many operating system architectures that might not be possible with C dependencies. +- [`io`](./io/README.md): Pure-rust readers and writers for geospatial file formats. -Future modules: +Future potential modules: - `geos`: [GEOS](https://libgeos.org/)-based algorithms on GeoArrow memory. - `proj`: [PROJ](https://proj.org/en/9.3/)-based coordinate reprojection on GeoArrow memory. diff --git a/python/docs/poetry.lock b/python/docs/poetry.lock deleted file mode 100644 index 0d8377a02..000000000 --- a/python/docs/poetry.lock +++ /dev/null @@ -1,2328 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. - -[[package]] -name = "appnope" -version = "0.1.4" -description = "Disable App Nap on macOS >= 10.9" -optional = false -python-versions = ">=3.6" -files = [ - {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, - 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"https://github.com/geoarrow/geoarrow-rs" +license = "MIT OR Apache-2.0" +keywords = ["python", "arrow", "geospatial"] +categories = ["wasm", "science::geo"] +rust-version = "1.80" + +# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html +[lib] +name = "_rust" +crate-type = ["cdylib"] + +[features] +default = ["libc", "rayon"] +libc = ["geoarrow/polylabel"] +rayon = ["geoarrow/rayon"] + +[dependencies] +arrow = { workspace = true } +arrow-array = { workspace = true } +arrow-buffer = { workspace = true } +pyo3 = { workspace = true } +pyo3-arrow = { workspace = true } +geo = "0.28" +geoarrow = { path = "../../", features = ["geozero"] } +geozero = { version = "0.13", features = ["with-svg"] } +numpy = "0.21" +serde_json = "1" +thiserror = "1" +url = "2.5" diff --git a/python/core/DEVELOP.md b/python/geoarrow-core/DEVELOP.md similarity index 100% rename from python/core/DEVELOP.md rename to python/geoarrow-core/DEVELOP.md diff --git a/python/core/README.md b/python/geoarrow-core/README.md similarity index 100% rename from python/core/README.md rename to python/geoarrow-core/README.md diff --git a/python/core/pyproject.toml b/python/geoarrow-core/pyproject.toml similarity index 51% rename from python/core/pyproject.toml rename to python/geoarrow-core/pyproject.toml index 2b1463603..cd2d71514 100644 --- a/python/core/pyproject.toml +++ b/python/geoarrow-core/pyproject.toml @@ -17,27 +17,3 @@ dynamic = ["version"] features = ["pyo3/extension-module"] module-name = "geoarrow.rust.core._rust" python-source = "python" - -[tool.poetry] -name = "geoarrow-rust-core" -version = "0.0.0" -description = "" -authors = [] -packages = [{ include = "python/geoarrow/rust/core" }] - -[tool.poetry.dependencies] -# Note: this is only for dev dependencies -python = "^3.9" - -[tool.poetry.group.dev.dependencies] -pytest = "^8.0.0" -pyarrow = "^16.0.0" -maturin = "^1.4.0" -shapely = "^2.0.2" -geopandas = "^1" -geodatasets = "^2023.12.0" -ipykernel = "^6.29.2" -pyogrio = ">=0.8" -affine = "^2.4.0" -arro3-core = ">=0.3.0" -numpy = "<2" diff --git a/python/core/python/geoarrow/rust/core/__init__.py b/python/geoarrow-core/python/geoarrow/rust/core/__init__.py similarity index 100% rename from python/core/python/geoarrow/rust/core/__init__.py rename to python/geoarrow-core/python/geoarrow/rust/core/__init__.py diff --git a/python/core/python/geoarrow/rust/core/_alg.py b/python/geoarrow-core/python/geoarrow/rust/core/_alg.py similarity index 100% rename from python/core/python/geoarrow/rust/core/_alg.py rename to python/geoarrow-core/python/geoarrow/rust/core/_alg.py diff --git a/python/core/python/geoarrow/rust/core/_crs.py b/python/geoarrow-core/python/geoarrow/rust/core/_crs.py similarity index 100% rename from python/core/python/geoarrow/rust/core/_crs.py rename to python/geoarrow-core/python/geoarrow/rust/core/_crs.py diff --git a/python/core/python/geoarrow/rust/core/_rust.pyi b/python/geoarrow-core/python/geoarrow/rust/core/_rust.pyi similarity index 65% rename from python/core/python/geoarrow/rust/core/_rust.pyi rename to python/geoarrow-core/python/geoarrow/rust/core/_rust.pyi index 45f5a795f..ca275a516 100644 --- a/python/core/python/geoarrow/rust/core/_rust.pyi +++ b/python/geoarrow-core/python/geoarrow/rust/core/_rust.pyi @@ -3,24 +3,18 @@ from __future__ import annotations from pathlib import Path from typing import ( Any, - BinaryIO, - Dict, List, - Optional, Self, Sequence, Tuple, - Union, overload, ) -from arro3.core import Array, ChunkedArray, RecordBatchReader, Schema, Table +from arro3.core import Array, ChunkedArray, RecordBatchReader, Table from arro3.core.types import ( ArrowArrayExportable, - ArrowSchemaExportable, ArrowStreamExportable, ) -from pyproj import CRS try: import numpy as np @@ -35,7 +29,6 @@ except ImportError: from .enums import ( AreaMethod, - GeoParquetEncoding, LengthMethod, RotateOrigin, SimplifyMethod, @@ -43,11 +36,8 @@ from .enums import ( from .types import ( AffineTransform, AreaMethodT, - BboxPaths, BroadcastGeometry, GeoInterfaceProtocol, - GeoParquetEncodingT, - IntFloat, LengthMethodT, NumpyArrayProtocolf64, RotateOriginT, @@ -750,507 +740,7 @@ def explode(input: ArrowStreamExportable) -> Table: def geometry_col(table: ArrowStreamExportable) -> ChunkedGeometryArray: ... -# I/O - -class ParquetFile: - def __init__(self, path: str, fs: ObjectStore) -> None: - """ - Construct a new ParquetFile - - This will synchronously fetch metadata from the provided path - - Args: - path: a string URL to read from. - fs: the file system interface to read from. - - Returns: - A new ParquetFile object. - """ - @property - def num_rows(self) -> int: - """The number of rows in this file.""" - @property - def num_row_groups(self) -> int: - """The number of row groups in this file.""" - @property - def schema_arrow(self) -> Schema: - """Access the Arrow schema of the generated data""" - def crs(self, column_name: str | None = None) -> CRS: - """Access the CRS of this file. - - Args: - column_name: The geometry column name. If there is more than one geometry column in the file, you must specify which you want to read. Defaults to None. - - Returns: - CRS - """ - def row_group_bounds( - self, row_group_idx: int, bbox_paths: BboxPaths | None = None - ) -> List[float]: - """Get the bounds of a single row group. - - Args: - row_group_idx: The row group index. - bbox_paths: For files written with spatial partitioning, you don't need to pass in these column names, as they'll be specified in the metadata Defaults to None. - - Returns: - The bounds of a single row group. - """ - def row_groups_bounds(self, bbox_paths: BboxPaths | None = None) -> GeometryArray: - """ - Get the bounds of all row groups. - - As of GeoParquet 1.1 you won't need to pass in these column names, as they'll be - specified in the metadata. - - Args: - bbox_paths: For files written with spatial partitioning, you don't need to pass in these column names, as they'll be specified in the metadata Defaults to None. - - Returns: - A geoarrow "box" array with bounds of all row groups. - """ - def file_bbox(self) -> List[float] | None: - """ - Access the bounding box of the given column for the entire file - - If no column name is passed, retrieves the bbox from the primary geometry column. - - An Err will be returned if the column name does not exist in the dataset - None will be returned if the metadata does not contain bounding box information. - """ - async def read_async( - self, - *, - batch_size: int | None = None, - limit: int | None = None, - offset: int | None = None, - bbox: Sequence[IntFloat] | None = None, - bbox_paths: BboxPaths | None = None, - ) -> Table: - """Perform an async read with the given options - - Args: - batch_size: _description_. Defaults to None. - limit: _description_. Defaults to None. - offset: _description_. Defaults to None. - bbox: _description_. Defaults to None. - bbox_paths: _description_. Defaults to None. - - Returns: - _description_ - """ - def read( - self, - *, - batch_size: int | None = None, - limit: int | None = None, - offset: int | None = None, - bbox: Sequence[IntFloat] | None = None, - bbox_paths: BboxPaths | None = None, - ) -> Table: - """Perform a sync read with the given options - - Args: - batch_size: _description_. Defaults to None. - limit: _description_. Defaults to None. - offset: _description_. Defaults to None. - bbox: _description_. Defaults to None. - bbox_paths: _description_. Defaults to None. - - Returns: - _description_ - """ - -class ParquetDataset: - def __init__(self, paths: Sequence[str], fs: ObjectStore) -> None: - """ - Construct a new ParquetDataset - - This will synchronously fetch metadata from all listed files. - - Args: - paths: a list of string URLs to read from. - fs: the file system interface to read from. - - Returns: - A new ParquetDataset object. - """ - @property - def num_rows(self) -> int: - """The total number of rows across all files.""" - @property - def num_row_groups(self) -> int: - """The total number of row groups across all files""" - @property - def schema_arrow(self) -> Schema: - """Access the Arrow schema of the generated data""" - def crs(self, column_name: str | None = None) -> CRS: - """Access the CRS of this file. - - Args: - column_name: The geometry column name. If there is more than one geometry column in the file, you must specify which you want to read. Defaults to None. - - Returns: - CRS - """ - async def read_async( - self, - *, - batch_size: int | None = None, - limit: int | None = None, - offset: int | None = None, - bbox: Sequence[IntFloat] | None = None, - bbox_paths: BboxPaths | None = None, - ) -> Table: - """Perform an async read with the given options - - Args: - batch_size: _description_. Defaults to None. - limit: _description_. Defaults to None. - offset: _description_. Defaults to None. - bbox: _description_. Defaults to None. - bbox_paths: _description_. Defaults to None. - - Returns: - _description_ - """ - - def read( - self, - *, - batch_size: int | None = None, - limit: int | None = None, - offset: int | None = None, - bbox: Sequence[IntFloat] | None = None, - bbox_paths: BboxPaths | None = None, - ) -> Table: - """Perform a sync read with the given options - - Args: - batch_size: _description_. Defaults to None. - limit: _description_. Defaults to None. - offset: _description_. Defaults to None. - bbox: _description_. Defaults to None. - bbox_paths: _description_. Defaults to None. - - Returns: - _description_ - """ - -class ParquetWriter: - """Writer interface for a single Parquet file. - - This allows you to write Parquet files that are larger than memory. - """ - def __init__( - self, file: str | Path | BinaryIO, schema: ArrowSchemaExportable - ) -> None: ... - def __enter__(self): ... - def __exit__(self, type, value, traceback): ... - def close(self) -> None: - """ - Close this file. - - The recommended use of this class is as a context manager, which will close the - file automatically. - """ - def is_closed(self) -> bool: - """Returns `True` if the file has already been closed.""" - def write_batch(self, batch: ArrowArrayExportable) -> None: - """Write a single RecordBatch to the Parquet file""" - def write_table(self, table: ArrowArrayExportable | ArrowStreamExportable) -> None: - """ - Write a table or stream of batches to the Parquet file - - This accepts an Arrow RecordBatch, Table, or RecordBatchReader. If a - RecordBatchReader is passed, only one batch at a time will be materialized in - memory. - - Args: - table: _description_ - """ - -class ObjectStore: - def __init__(self, root: str, options: Optional[Dict[str, str]] = None) -> None: ... - -def read_csv( - file: str | Path | BinaryIO, - geometry_column_name: str, - *, - batch_size: int = 65536, -) -> Table: - """ - Read a CSV file from a path on disk into a Table. - - Args: - file: the path to the file or a Python file object in binary read mode. - geometry_column_name: the name of the geometry column within the CSV. - batch_size: the number of rows to include in each internal batch of the table. - - Returns: - Table from CSV file. - """ - -def read_flatgeobuf( - file: Union[str, Path, BinaryIO], - *, - fs: Optional[ObjectStore] = None, - batch_size: int = 65536, - bbox: Tuple[float, float, float, float] | None = None, -) -> Table: - """ - Read a FlatGeobuf file from a path on disk or a remote location into an Arrow Table. - - Example: - - Reading from a local path: - - ```py - from geoarrow.rust.core import read_flatgeobuf - table = read_flatgeobuf("path/to/file.fgb") - ``` - - Reading from a Python file object: - - ```py - from geoarrow.rust.core import read_flatgeobuf - - with open("path/to/file.fgb", "rb") as file: - table = read_flatgeobuf(file) - ``` - - Reading from an HTTP(S) url: - - ```py - from geoarrow.rust.core import read_flatgeobuf - - url = "http://flatgeobuf.org/test/data/UScounties.fgb" - table = read_flatgeobuf(url) - ``` - - Reading from a remote file on an S3 bucket. - - ```py - from geoarrow.rust.core import ObjectStore, read_flatgeobuf - - options = { - "aws_access_key_id": "...", - "aws_secret_access_key": "...", - "aws_region": "..." - } - fs = ObjectStore('s3://bucket', options=options) - table = read_flatgeobuf("path/in/bucket.fgb", fs=fs) - ``` - - Args: - file: the path to the file or a Python file object in binary read mode. - - Other args: - fs: an ObjectStore instance for this url. This is required only if the file is at a remote - location. - batch_size: the number of rows to include in each internal batch of the table. - bbox: A spatial filter for reading rows, of the format (minx, miny, maxx, maxy). If set to - `None`, no spatial filtering will be performed. - - Returns: - Table from FlatGeobuf file. - """ - -async def read_flatgeobuf_async( - path: str, - *, - fs: Optional[ObjectStore] = None, - batch_size: int = 65536, - bbox: Tuple[float, float, float, float] | None = None, -) -> Table: - """ - Read a FlatGeobuf file from a url into an Arrow Table. - - Example: - - Reading from an HTTP(S) url: - - ```py - from geoarrow.rust.core import read_flatgeobuf_async - - url = "http://flatgeobuf.org/test/data/UScounties.fgb" - table = await read_flatgeobuf_async(url) - ``` - - Reading from an S3 bucket: - - ```py - from geoarrow.rust.core import ObjectStore, read_flatgeobuf_async - - options = { - "aws_access_key_id": "...", - "aws_secret_access_key": "...", - "aws_region": "..." - } - fs = ObjectStore('s3://bucket', options=options) - table = await read_flatgeobuf_async("path/in/bucket.fgb", fs=fs) - ``` - - Args: - path: the url or relative path to a remote FlatGeobuf file. If an argument is passed for - `fs`, this should be a path fragment relative to the root passed to the `ObjectStore` - constructor. - - Other args: - fs: an ObjectStore instance for this url. This is required for non-HTTP urls. - batch_size: the number of rows to include in each internal batch of the table. - bbox: A spatial filter for reading rows, of the format (minx, miny, maxx, maxy). If set to - `None`, no spatial filtering will be performed. - - Returns: - Table from FlatGeobuf file. - """ - -def read_geojson(file: Union[str, Path, BinaryIO], *, batch_size: int = 65536) -> Table: - """ - Read a GeoJSON file from a path on disk into an Arrow Table. - - Args: - file: the path to the file or a Python file object in binary read mode. - batch_size: the number of rows to include in each internal batch of the table. - - Returns: - Table from GeoJSON file. - """ - -def read_geojson_lines( - file: Union[str, Path, BinaryIO], *, batch_size: int = 65536 -) -> Table: - """ - Read a newline-delimited GeoJSON file from a path on disk into an Arrow Table. - - This expects a GeoJSON Feature on each line of a text file, with a newline character separating - each Feature. - - Args: - file: the path to the file or a Python file object in binary read mode. - batch_size: the number of rows to include in each internal batch of the table. - - Returns: - Table from GeoJSON file. - """ - -def read_parquet( - path: Union[str, Path, BinaryIO], - *, - fs: Optional[ObjectStore] = None, - batch_size: int = 65536, -) -> Table: - """ - Read a GeoParquet file from a path on disk into an Arrow Table. - - Example: - - Reading from a local path: - - ```py - from geoarrow.rust.core import read_parquet - table = read_parquet("path/to/file.parquet") - ``` - - Reading from an HTTP(S) url: - - ```py - from geoarrow.rust.core import read_parquet - - url = "https://raw.githubusercontent.com/opengeospatial/geoparquet/v1.0.0/examples/example.parquet" - table = read_parquet(url) - ``` - - Reading from a remote file on an S3 bucket. - - ```py - from geoarrow.rust.core import ObjectStore, read_parquet - - options = { - "aws_access_key_id": "...", - "aws_secret_access_key": "...", - "aws_region": "..." - } - fs = ObjectStore('s3://bucket', options=options) - table = read_parquet("path/in/bucket.parquet", fs=fs) - ``` - - Args: - path: the path to the file - fs: the ObjectStore to read from. Defaults to None. - batch_size: the number of rows to include in each internal batch of the table. - - Returns: - Table from GeoParquet file. - """ - -async def read_parquet_async( - path: Union[str, Path, BinaryIO], - *, - fs: Optional[ObjectStore] = None, - batch_size: int = 65536, -) -> Table: - """ - Read a GeoParquet file from a path on disk into an Arrow Table. - - Examples: - - Reading from an HTTP(S) url: - - ```py - from geoarrow.rust.core import read_parquet_async - - url = "https://raw.githubusercontent.com/opengeospatial/geoparquet/v1.0.0/examples/example.parquet" - table = await read_parquet_async(url) - ``` - - Reading from a remote file on an S3 bucket. - - ```py - from geoarrow.rust.core import ObjectStore, read_parquet_async - - options = { - "aws_access_key_id": "...", - "aws_secret_access_key": "...", - "aws_region": "..." - } - fs = ObjectStore('s3://bucket', options=options) - table = await read_parquet_async("path/in/bucket.parquet", fs=fs) - ``` - - Args: - path: the path to the file - fs: the ObjectStore to read from. Defaults to None. - batch_size: the number of rows to include in each internal batch of the table. - - Returns: - Table from GeoParquet file. - """ - -def read_postgis(connection_url: str, sql: str) -> Optional[Table]: - """ - Read a PostGIS query into an Arrow Table. - - Args: - connection_url: _description_ - sql: _description_ - - Returns: - Table from query. - """ - -async def read_postgis_async(connection_url: str, sql: str) -> Optional[Table]: - """ - Read a PostGIS query into an Arrow Table. - - Args: - connection_url: _description_ - sql: _description_ - - Returns: - Table from query. - """ +# Interop def read_pyogrio( path_or_buffer: Path | str | bytes, @@ -1361,87 +851,6 @@ def read_pyogrio( Table """ -def write_csv(table: ArrowStreamExportable, file: str | Path | BinaryIO) -> None: - """ - Write a Table to a CSV file on disk. - - Args: - table: the Arrow RecordBatch, Table, or RecordBatchReader to write. - file: the path to the file or a Python file object in binary write mode. - - Returns: - None - """ - -def write_flatgeobuf( - table: ArrowStreamExportable, - file: str | Path | BinaryIO, - *, - write_index: bool = True, -) -> None: - """ - Write to a FlatGeobuf file on disk. - - Args: - table: the Arrow RecordBatch, Table, or RecordBatchReader to write. - file: the path to the file or a Python file object in binary write mode. - - Other args: - write_index: whether to write a spatial index in the FlatGeobuf file. Defaults to True. - """ - -def write_geojson( - table: ArrowStreamExportable, file: Union[str, Path, BinaryIO] -) -> None: - """ - Write to a GeoJSON file on disk. - - Note that the GeoJSON specification mandates coordinates to be in the WGS84 (EPSG:4326) - coordinate system, but this function will not automatically reproject into WGS84 for you. - - Args: - table: the Arrow RecordBatch, Table, or RecordBatchReader to write. - file: the path to the file or a Python file object in binary write mode. - - Returns: - None - """ - -def write_geojson_lines( - table: ArrowStreamExportable, file: Union[str, Path, BinaryIO] -) -> None: - """ - Write to a newline-delimited GeoJSON file on disk. - - Note that the GeoJSON specification mandates coordinates to be in the WGS84 (EPSG:4326) - coordinate system, but this function will not automatically reproject into WGS84 for you. - - Args: - table: the Arrow RecordBatch, Table, or RecordBatchReader to write. - file: the path to the file or a Python file object in binary write mode. - - Returns: - None - """ - -def write_parquet( - table: ArrowStreamExportable, - file: Union[str, Path, BinaryIO], - *, - encoding: GeoParquetEncoding | GeoParquetEncodingT = GeoParquetEncoding.WKB, -) -> None: - """ - Write an Arrow RecordBatch, Table, or RecordBatchReader to a GeoParquet file on disk. - - If a RecordBatchReader is passed, only one batch at a time will be materialized in memory. - - Args: - table: the table to write. - file: the path to the file or a Python file object in binary write mode. - encoding: the geometry encoding to use. Defaults to `GeoParquetEncoding.WKB`. - """ - -# Interop def from_ewkb(input: ArrowArrayExportable) -> GeometryArray: """ Parse an Arrow BinaryArray from EWKB to its GeoArrow-native counterpart. diff --git a/python/core/python/geoarrow/rust/core/enums.py b/python/geoarrow-core/python/geoarrow/rust/core/enums.py similarity index 92% rename from python/core/python/geoarrow/rust/core/enums.py rename to python/geoarrow-core/python/geoarrow/rust/core/enums.py index dbfb83808..eb448e013 100644 --- a/python/core/python/geoarrow/rust/core/enums.py +++ b/python/geoarrow-core/python/geoarrow/rust/core/enums.py @@ -67,23 +67,6 @@ class AreaMethod(StrEnum): """ -class GeoParquetEncoding(StrEnum): - """Options for geometry encoding in GeoParquet.""" - - WKB = auto() - """Use Well-Known Binary (WKB) encoding when writing GeoParquet files. - """ - - Native = auto() - """Use native GeoArrow geometry types when writing GeoParquet files. - - Supported as of GeoParquet version 1.1. - - This option provides for better read and write performance and for inferring spatial - partitioning from remote files. But it does not yet have widespread support. - """ - - class LengthMethod(StrEnum): Ellipsoidal = auto() """Determine the length of a geometry on an ellipsoidal model of the earth. diff --git a/python/core/python/geoarrow/rust/core/py.typed b/python/geoarrow-core/python/geoarrow/rust/core/py.typed similarity index 100% rename from python/core/python/geoarrow/rust/core/py.typed rename to python/geoarrow-core/python/geoarrow/rust/core/py.typed diff --git a/python/core/python/geoarrow/rust/core/types.py b/python/geoarrow-core/python/geoarrow/rust/core/types.py similarity index 83% rename from python/core/python/geoarrow/rust/core/types.py rename to python/geoarrow-core/python/geoarrow/rust/core/types.py index d60310c15..3038ed019 100644 --- a/python/core/python/geoarrow/rust/core/types.py +++ b/python/geoarrow-core/python/geoarrow/rust/core/types.py @@ -1,6 +1,6 @@ from __future__ import annotations -from typing import Literal, Protocol, Sequence, Tuple, TypedDict, TypeVar, Union +from typing import Literal, Protocol, Tuple, TypeVar, Union from arro3.core.types import ( ArrowArrayExportable, @@ -44,11 +44,6 @@ [`signed_area`][geoarrow.rust.core.signed_area]. """ -GeoParquetEncodingT = Literal["wkb", "native"] -"""Acceptable strings to be passed into the `encoding` parameter for -[`write_parquet`][geoarrow.rust.core.write_parquet]. -""" - LengthMethodT = Literal["ellipsoidal", "euclidean", "haversine", "vincenty"] """Acceptable strings to be passed into the `method` parameter for @@ -89,10 +84,3 @@ def __array__(self) -> NDArray[np.float64]: ... ArrowArrayExportable, ArrowStreamExportable, ] - - -class BboxPaths(TypedDict): - xmin: Sequence[str] - ymin: Sequence[str] - xmax: Sequence[str] - ymax: Sequence[str] diff --git a/python/core/src/algorithm/geo/affine_ops.rs b/python/geoarrow-core/src/algorithm/geo/affine_ops.rs similarity index 100% rename from python/core/src/algorithm/geo/affine_ops.rs rename to python/geoarrow-core/src/algorithm/geo/affine_ops.rs diff --git a/python/core/src/algorithm/geo/area.rs b/python/geoarrow-core/src/algorithm/geo/area.rs similarity index 100% rename from python/core/src/algorithm/geo/area.rs rename to python/geoarrow-core/src/algorithm/geo/area.rs diff --git a/python/core/src/algorithm/geo/center.rs b/python/geoarrow-core/src/algorithm/geo/center.rs similarity index 100% rename from python/core/src/algorithm/geo/center.rs rename to python/geoarrow-core/src/algorithm/geo/center.rs diff --git a/python/core/src/algorithm/geo/centroid.rs b/python/geoarrow-core/src/algorithm/geo/centroid.rs similarity index 100% rename from python/core/src/algorithm/geo/centroid.rs rename to python/geoarrow-core/src/algorithm/geo/centroid.rs diff --git a/python/core/src/algorithm/geo/chaikin_smoothing.rs b/python/geoarrow-core/src/algorithm/geo/chaikin_smoothing.rs similarity index 100% rename from python/core/src/algorithm/geo/chaikin_smoothing.rs rename to python/geoarrow-core/src/algorithm/geo/chaikin_smoothing.rs diff --git a/python/core/src/algorithm/geo/convex_hull.rs b/python/geoarrow-core/src/algorithm/geo/convex_hull.rs similarity index 100% rename from python/core/src/algorithm/geo/convex_hull.rs rename to python/geoarrow-core/src/algorithm/geo/convex_hull.rs diff --git a/python/core/src/algorithm/geo/densify.rs b/python/geoarrow-core/src/algorithm/geo/densify.rs similarity index 100% rename from python/core/src/algorithm/geo/densify.rs rename to python/geoarrow-core/src/algorithm/geo/densify.rs diff --git a/python/core/src/algorithm/geo/dimensions.rs b/python/geoarrow-core/src/algorithm/geo/dimensions.rs similarity index 100% rename from python/core/src/algorithm/geo/dimensions.rs rename to python/geoarrow-core/src/algorithm/geo/dimensions.rs diff --git a/python/core/src/algorithm/geo/envelope.rs b/python/geoarrow-core/src/algorithm/geo/envelope.rs similarity index 100% rename from python/core/src/algorithm/geo/envelope.rs rename to python/geoarrow-core/src/algorithm/geo/envelope.rs diff --git a/python/core/src/algorithm/geo/frechet_distance.rs b/python/geoarrow-core/src/algorithm/geo/frechet_distance.rs similarity index 100% rename from python/core/src/algorithm/geo/frechet_distance.rs rename to python/geoarrow-core/src/algorithm/geo/frechet_distance.rs diff --git a/python/core/src/algorithm/geo/geodesic_area.rs b/python/geoarrow-core/src/algorithm/geo/geodesic_area.rs similarity index 100% rename from python/core/src/algorithm/geo/geodesic_area.rs rename to python/geoarrow-core/src/algorithm/geo/geodesic_area.rs diff --git a/python/core/src/algorithm/geo/length.rs b/python/geoarrow-core/src/algorithm/geo/length.rs similarity index 100% rename from python/core/src/algorithm/geo/length.rs rename to python/geoarrow-core/src/algorithm/geo/length.rs diff --git a/python/core/src/algorithm/geo/line_interpolate_point.rs b/python/geoarrow-core/src/algorithm/geo/line_interpolate_point.rs similarity index 100% rename from python/core/src/algorithm/geo/line_interpolate_point.rs rename to python/geoarrow-core/src/algorithm/geo/line_interpolate_point.rs diff --git a/python/core/src/algorithm/geo/line_locate_point.rs b/python/geoarrow-core/src/algorithm/geo/line_locate_point.rs similarity index 100% rename from python/core/src/algorithm/geo/line_locate_point.rs rename to python/geoarrow-core/src/algorithm/geo/line_locate_point.rs diff --git a/python/core/src/algorithm/geo/mod.rs b/python/geoarrow-core/src/algorithm/geo/mod.rs similarity index 100% rename from python/core/src/algorithm/geo/mod.rs rename to python/geoarrow-core/src/algorithm/geo/mod.rs diff --git a/python/core/src/algorithm/geo/rotate.rs b/python/geoarrow-core/src/algorithm/geo/rotate.rs similarity index 100% rename from python/core/src/algorithm/geo/rotate.rs rename to python/geoarrow-core/src/algorithm/geo/rotate.rs diff --git a/python/core/src/algorithm/geo/scale.rs b/python/geoarrow-core/src/algorithm/geo/scale.rs similarity index 100% rename from python/core/src/algorithm/geo/scale.rs rename to python/geoarrow-core/src/algorithm/geo/scale.rs diff --git a/python/core/src/algorithm/geo/simplify.rs b/python/geoarrow-core/src/algorithm/geo/simplify.rs similarity index 100% rename from python/core/src/algorithm/geo/simplify.rs rename to python/geoarrow-core/src/algorithm/geo/simplify.rs diff --git a/python/core/src/algorithm/geo/skew.rs b/python/geoarrow-core/src/algorithm/geo/skew.rs similarity index 100% rename from python/core/src/algorithm/geo/skew.rs rename to python/geoarrow-core/src/algorithm/geo/skew.rs diff --git a/python/core/src/algorithm/geo/translate.rs b/python/geoarrow-core/src/algorithm/geo/translate.rs similarity index 100% rename from python/core/src/algorithm/geo/translate.rs rename to python/geoarrow-core/src/algorithm/geo/translate.rs diff --git a/python/core/src/algorithm/mod.rs b/python/geoarrow-core/src/algorithm/mod.rs similarity index 100% rename from python/core/src/algorithm/mod.rs rename to python/geoarrow-core/src/algorithm/mod.rs diff --git a/python/core/src/algorithm/native/explode.rs b/python/geoarrow-core/src/algorithm/native/explode.rs similarity index 100% rename from python/core/src/algorithm/native/explode.rs rename to python/geoarrow-core/src/algorithm/native/explode.rs diff --git a/python/core/src/algorithm/native/mod.rs b/python/geoarrow-core/src/algorithm/native/mod.rs similarity index 100% rename from python/core/src/algorithm/native/mod.rs rename to python/geoarrow-core/src/algorithm/native/mod.rs diff --git a/python/core/src/algorithm/native/total_bounds.rs b/python/geoarrow-core/src/algorithm/native/total_bounds.rs similarity index 100% rename from python/core/src/algorithm/native/total_bounds.rs rename to python/geoarrow-core/src/algorithm/native/total_bounds.rs diff --git a/python/core/src/algorithm/polylabel.rs b/python/geoarrow-core/src/algorithm/polylabel.rs similarity index 100% rename from python/core/src/algorithm/polylabel.rs rename to python/geoarrow-core/src/algorithm/polylabel.rs diff --git a/python/core/src/array/mod.rs b/python/geoarrow-core/src/array/mod.rs similarity index 100% rename from python/core/src/array/mod.rs rename to python/geoarrow-core/src/array/mod.rs diff --git a/python/core/src/broadcasting/mod.rs b/python/geoarrow-core/src/broadcasting/mod.rs similarity index 100% rename from python/core/src/broadcasting/mod.rs rename to python/geoarrow-core/src/broadcasting/mod.rs diff --git a/python/core/src/broadcasting/primitive.rs b/python/geoarrow-core/src/broadcasting/primitive.rs similarity index 100% rename from python/core/src/broadcasting/primitive.rs rename to python/geoarrow-core/src/broadcasting/primitive.rs diff --git a/python/core/src/chunked_array/mod.rs b/python/geoarrow-core/src/chunked_array/mod.rs similarity index 100% rename from python/core/src/chunked_array/mod.rs rename to python/geoarrow-core/src/chunked_array/mod.rs diff --git a/python/core/src/crs.rs b/python/geoarrow-core/src/crs.rs similarity index 100% rename from python/core/src/crs.rs rename to python/geoarrow-core/src/crs.rs diff --git a/python/geoarrow-core/src/error.rs b/python/geoarrow-core/src/error.rs new file mode 100644 index 000000000..77b3509c8 --- /dev/null +++ b/python/geoarrow-core/src/error.rs @@ -0,0 +1,72 @@ +use pyo3::exceptions::{PyException, PyTypeError, PyValueError}; +use pyo3::prelude::*; + +pub enum PyGeoArrowError { + GeoArrowError(geoarrow::error::GeoArrowError), + PyErr(PyErr), + PyArrowError(pyo3_arrow::error::PyArrowError), + SerdeJsonError(serde_json::Error), + UrlParseError(url::ParseError), +} + +impl From for PyErr { + fn from(error: PyGeoArrowError) -> Self { + match error { + PyGeoArrowError::GeoArrowError(err) => PyException::new_err(err.to_string()), + PyGeoArrowError::PyErr(err) => err, + PyGeoArrowError::PyArrowError(err) => err.into(), + PyGeoArrowError::SerdeJsonError(err) => PyException::new_err(err.to_string()), + PyGeoArrowError::UrlParseError(err) => PyException::new_err(err.to_string()), + } + } +} + +impl From for PyGeoArrowError { + fn from(other: geoarrow::error::GeoArrowError) -> Self { + Self::GeoArrowError(other) + } +} + +impl From for PyGeoArrowError { + fn from(other: pyo3_arrow::error::PyArrowError) -> Self { + Self::PyArrowError(other) + } +} + +impl From for PyGeoArrowError { + fn from(other: serde_json::Error) -> Self { + Self::SerdeJsonError(other) + } +} + +impl From for PyGeoArrowError { + fn from(other: url::ParseError) -> Self { + Self::UrlParseError(other) + } +} + +impl From for PyGeoArrowError { + fn from(other: PyTypeError) -> Self { + Self::PyErr((&other).into()) + } +} + +impl From for PyGeoArrowError { + fn from(other: PyValueError) -> Self { + Self::PyErr((&other).into()) + } +} + +impl From for PyGeoArrowError { + fn from(other: PyErr) -> Self { + Self::PyErr(other) + } +} + +impl From for PyGeoArrowError { + fn from(value: arrow::error::ArrowError) -> Self { + PyGeoArrowError::GeoArrowError(value.into()) + } +} + +pub type PyGeoArrowResult = Result; diff --git a/python/core/src/ffi/from_python/array.rs b/python/geoarrow-core/src/ffi/from_python/array.rs similarity index 100% rename from python/core/src/ffi/from_python/array.rs rename to python/geoarrow-core/src/ffi/from_python/array.rs diff --git a/python/core/src/ffi/from_python/chunked.rs b/python/geoarrow-core/src/ffi/from_python/chunked.rs similarity index 100% rename from python/core/src/ffi/from_python/chunked.rs rename to python/geoarrow-core/src/ffi/from_python/chunked.rs diff --git a/python/core/src/ffi/from_python/input.rs b/python/geoarrow-core/src/ffi/from_python/input.rs similarity index 100% rename from python/core/src/ffi/from_python/input.rs rename to python/geoarrow-core/src/ffi/from_python/input.rs diff --git a/python/core/src/ffi/from_python/mod.rs b/python/geoarrow-core/src/ffi/from_python/mod.rs similarity index 100% rename from python/core/src/ffi/from_python/mod.rs rename to python/geoarrow-core/src/ffi/from_python/mod.rs diff --git a/python/core/src/ffi/from_python/scalar.rs b/python/geoarrow-core/src/ffi/from_python/scalar.rs similarity index 100% rename from python/core/src/ffi/from_python/scalar.rs rename to python/geoarrow-core/src/ffi/from_python/scalar.rs diff --git a/python/core/src/ffi/mod.rs b/python/geoarrow-core/src/ffi/mod.rs similarity index 100% rename from python/core/src/ffi/mod.rs rename to python/geoarrow-core/src/ffi/mod.rs diff --git a/python/core/src/ffi/to_python/array.rs b/python/geoarrow-core/src/ffi/to_python/array.rs similarity index 100% rename from python/core/src/ffi/to_python/array.rs rename to python/geoarrow-core/src/ffi/to_python/array.rs diff --git a/python/core/src/ffi/to_python/mod.rs b/python/geoarrow-core/src/ffi/to_python/mod.rs similarity index 100% rename from python/core/src/ffi/to_python/mod.rs rename to python/geoarrow-core/src/ffi/to_python/mod.rs diff --git a/python/core/src/io/ewkb.rs b/python/geoarrow-core/src/interop/ewkb.rs similarity index 100% rename from python/core/src/io/ewkb.rs rename to python/geoarrow-core/src/interop/ewkb.rs diff --git a/python/core/src/interop/geopandas/from_geopandas.rs b/python/geoarrow-core/src/interop/geopandas/from_geopandas.rs similarity index 100% rename from python/core/src/interop/geopandas/from_geopandas.rs rename to python/geoarrow-core/src/interop/geopandas/from_geopandas.rs diff --git a/python/core/src/interop/geopandas/mod.rs b/python/geoarrow-core/src/interop/geopandas/mod.rs similarity index 100% rename from python/core/src/interop/geopandas/mod.rs rename to python/geoarrow-core/src/interop/geopandas/mod.rs diff --git a/python/core/src/interop/geopandas/to_geopandas.rs b/python/geoarrow-core/src/interop/geopandas/to_geopandas.rs similarity index 100% rename from python/core/src/interop/geopandas/to_geopandas.rs rename to python/geoarrow-core/src/interop/geopandas/to_geopandas.rs diff --git a/python/core/src/interop/mod.rs b/python/geoarrow-core/src/interop/mod.rs similarity index 67% rename from python/core/src/interop/mod.rs rename to python/geoarrow-core/src/interop/mod.rs index 3a62426d8..3f7c01919 100644 --- a/python/core/src/interop/mod.rs +++ b/python/geoarrow-core/src/interop/mod.rs @@ -1,5 +1,8 @@ +pub mod ewkb; pub mod geopandas; pub mod numpy; pub mod pyogrio; pub mod shapely; pub mod util; +pub mod wkb; +pub mod wkt; diff --git a/python/core/src/interop/numpy/mod.rs b/python/geoarrow-core/src/interop/numpy/mod.rs similarity index 100% rename from python/core/src/interop/numpy/mod.rs rename to python/geoarrow-core/src/interop/numpy/mod.rs diff --git a/python/core/src/interop/numpy/to_numpy.rs b/python/geoarrow-core/src/interop/numpy/to_numpy.rs similarity index 100% rename from python/core/src/interop/numpy/to_numpy.rs rename to python/geoarrow-core/src/interop/numpy/to_numpy.rs diff --git a/python/core/src/interop/pyogrio/from_pyogrio.rs b/python/geoarrow-core/src/interop/pyogrio/from_pyogrio.rs similarity index 100% rename from python/core/src/interop/pyogrio/from_pyogrio.rs rename to python/geoarrow-core/src/interop/pyogrio/from_pyogrio.rs diff --git a/python/core/src/interop/pyogrio/mod.rs b/python/geoarrow-core/src/interop/pyogrio/mod.rs similarity index 100% rename from python/core/src/interop/pyogrio/mod.rs rename to python/geoarrow-core/src/interop/pyogrio/mod.rs diff --git a/python/core/src/interop/shapely/from_shapely.rs b/python/geoarrow-core/src/interop/shapely/from_shapely.rs similarity index 100% rename from python/core/src/interop/shapely/from_shapely.rs rename to python/geoarrow-core/src/interop/shapely/from_shapely.rs diff --git a/python/core/src/interop/shapely/mod.rs b/python/geoarrow-core/src/interop/shapely/mod.rs similarity index 100% rename from python/core/src/interop/shapely/mod.rs rename to python/geoarrow-core/src/interop/shapely/mod.rs diff --git a/python/core/src/interop/shapely/to_shapely.rs b/python/geoarrow-core/src/interop/shapely/to_shapely.rs similarity index 100% rename from python/core/src/interop/shapely/to_shapely.rs rename to python/geoarrow-core/src/interop/shapely/to_shapely.rs diff --git a/python/core/src/interop/shapely/utils.rs b/python/geoarrow-core/src/interop/shapely/utils.rs similarity index 100% rename from python/core/src/interop/shapely/utils.rs rename to python/geoarrow-core/src/interop/shapely/utils.rs diff --git a/python/core/src/interop/util.rs b/python/geoarrow-core/src/interop/util.rs similarity index 100% rename from python/core/src/interop/util.rs rename to python/geoarrow-core/src/interop/util.rs diff --git a/python/core/src/io/wkb.rs b/python/geoarrow-core/src/interop/wkb.rs similarity index 100% rename from python/core/src/io/wkb.rs rename to python/geoarrow-core/src/interop/wkb.rs diff --git a/python/core/src/io/wkt.rs b/python/geoarrow-core/src/interop/wkt.rs similarity index 100% rename from python/core/src/io/wkt.rs rename to python/geoarrow-core/src/interop/wkt.rs diff --git a/python/core/src/lib.rs b/python/geoarrow-core/src/lib.rs similarity index 68% rename from python/core/src/lib.rs rename to python/geoarrow-core/src/lib.rs index 3d1fa87b9..3a7c5d112 100644 --- a/python/core/src/lib.rs +++ b/python/geoarrow-core/src/lib.rs @@ -7,7 +7,6 @@ pub(crate) mod crs; pub mod error; pub mod ffi; pub mod interop; -pub mod io; pub mod scalar; pub mod table; @@ -108,53 +107,12 @@ fn _rust(_py: Python, m: &Bound) -> PyResult<()> { )?)?; m.add_function(wrap_pyfunction!(crate::table::geometry_col, m)?)?; - // Async IO - - #[cfg(feature = "async")] - { - m.add_class::()?; - m.add_class::()?; - m.add_class::()?; - - m.add_function(wrap_pyfunction!( - crate::io::flatgeobuf::read_flatgeobuf_async, - m - )?)?; - m.add_function(wrap_pyfunction!(crate::io::parquet::read_parquet_async, m)?)?; - - m.add_function(wrap_pyfunction!(crate::io::postgis::read_postgis, m)?)?; - m.add_function(wrap_pyfunction!(crate::io::postgis::read_postgis_async, m)?)?; - } - - // IO - - m.add_function(wrap_pyfunction!(crate::io::csv::read_csv, m)?)?; - m.add_function(wrap_pyfunction!(crate::io::flatgeobuf::read_flatgeobuf, m)?)?; - m.add_function(wrap_pyfunction!(crate::io::geojson::read_geojson, m)?)?; - m.add_function(wrap_pyfunction!( - crate::io::geojson_lines::read_geojson_lines, - m - )?)?; - m.add_function(wrap_pyfunction!(crate::io::parquet::read_parquet, m)?)?; - m.add_function(wrap_pyfunction!(crate::io::parquet::write_parquet, m)?)?; - m.add_class::()?; + // Interop m.add_function(wrap_pyfunction!( crate::interop::pyogrio::from_pyogrio::read_pyogrio, m )?)?; - m.add_function(wrap_pyfunction!(crate::io::csv::write_csv, m)?)?; - m.add_function(wrap_pyfunction!( - crate::io::flatgeobuf::write_flatgeobuf, - m - )?)?; - m.add_function(wrap_pyfunction!(crate::io::geojson::write_geojson, m)?)?; - m.add_function(wrap_pyfunction!( - crate::io::geojson_lines::write_geojson_lines, - m - )?)?; - - // Interop m.add_function(wrap_pyfunction!( crate::interop::geopandas::from_geopandas::from_geopandas, m @@ -164,7 +122,7 @@ fn _rust(_py: Python, m: &Bound) -> PyResult<()> { m )?)?; - m.add_function(wrap_pyfunction!(crate::io::ewkb::from_ewkb, m)?)?; + m.add_function(wrap_pyfunction!(crate::interop::ewkb::from_ewkb, m)?)?; m.add_function(wrap_pyfunction!( crate::interop::shapely::from_shapely::from_shapely, m @@ -173,9 +131,9 @@ fn _rust(_py: Python, m: &Bound) -> PyResult<()> { crate::interop::shapely::to_shapely::to_shapely, m )?)?; - 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python/core/Cargo.toml rename to python/geoarrow-io/Cargo.toml index 1fa45b5d6..fa1f907cb 100644 --- a/python/core/Cargo.toml +++ b/python/geoarrow-io/Cargo.toml @@ -1,5 +1,5 @@ [package] -name = "geoarrow-rust-core" +name = "geoarrow-rust-io" version = "0.3.0-alpha.1" authors = ["Kyle Barron "] edition = "2021" @@ -13,11 +13,11 @@ rust-version = "1.80" # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html [lib] -name = "_rust" +name = "_io" crate-type = ["cdylib"] [features] -default = ["async", "libc", "rayon"] +default = ["async"] async = [ "dep:futures", "dep:object_store", @@ -29,13 +29,9 @@ async = [ "dep:sqlx", "dep:tokio", ] -libc = ["geoarrow/polylabel"] -rayon = ["geoarrow/rayon"] [dependencies] -arrow = "52" -arrow-array = "52" -arrow-buffer = "52" +arrow = { workspace = true } bytes = "1" flatgeobuf = { version = "4.2.0", default-features = false } futures = { version = "0.3", optional = true } @@ -46,13 +42,8 @@ object_store = { version = "0.10", features = [ "http", ], optional = true } parquet = "52" -pyo3 = { version = "0.21.0", features = [ - "abi3-py38", - "hashbrown", - "serde", - "anyhow", -] } -pyo3-arrow = "0.2" +pyo3 = { workspace = true } +pyo3-arrow = { workspace = true } pyo3-asyncio-0-21 = { version = "0.21", features = [ "tokio-runtime", ], optional = true } @@ -66,13 +57,11 @@ geoarrow = { path = "../../", features = [ "parquet_compression", "parquet", ] } -geozero = { version = "0.13", features = ["with-svg"] } -numpy = "0.21" -serde_json = "1" +serde_json = { workspace = true } sqlx = { version = "0.7", default-features = false, features = [ "postgres", ], optional = true } -thiserror = "1" +thiserror = { workspace = true } tokio = { version = "1.9", features = ["rt"], optional = true } url = "2.5" diff --git a/python/geoarrow-io/README.md b/python/geoarrow-io/README.md new file mode 100644 index 000000000..2d2c22b03 --- /dev/null +++ b/python/geoarrow-io/README.md @@ -0,0 +1,7 @@ +# `geoarrow.rust.io` + +Python bindings to `geoarrow-rs` to read and write geospatial file formats. + +## Documentation + +Refer to the documentation at [geoarrow.github.io/geoarrow-rs/python](https://geoarrow.github.io/geoarrow-rs/python). diff --git a/python/core/poetry.lock b/python/geoarrow-io/poetry.lock similarity index 99% rename from python/core/poetry.lock rename to python/geoarrow-io/poetry.lock index 3324b06cf..5d9a95d57 100644 --- a/python/core/poetry.lock +++ b/python/geoarrow-io/poetry.lock @@ -149,13 +149,13 @@ test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] [[package]] name = "certifi" -version = "2024.7.4" +version = "2024.8.30" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"}, - {file = "certifi-2024.7.4.tar.gz", hash = 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+python-source = "python" diff --git a/python/geoarrow-io/python/geoarrow/rust/io/__init__.py b/python/geoarrow-io/python/geoarrow/rust/io/__init__.py new file mode 100644 index 000000000..b55f43c5d --- /dev/null +++ b/python/geoarrow-io/python/geoarrow/rust/io/__init__.py @@ -0,0 +1,5 @@ +from . import enums +from ._io import * +from ._io import ___version + +__version__: str = ___version() diff --git a/python/geoarrow-io/python/geoarrow/rust/io/_io.pyi b/python/geoarrow-io/python/geoarrow/rust/io/_io.pyi new file mode 100644 index 000000000..dccb7e42b --- /dev/null +++ b/python/geoarrow-io/python/geoarrow/rust/io/_io.pyi @@ -0,0 +1,717 @@ +from __future__ import annotations + +from pathlib import Path +from typing import ( + BinaryIO, + Dict, + List, + Optional, + Sequence, + Tuple, + Union, +) + +from arro3.core import RecordBatchReader, Schema, Table +from arro3.core.types import ( + ArrowArrayExportable, + ArrowSchemaExportable, + ArrowStreamExportable, +) +from pyproj import CRS + +from .enums import GeoParquetEncoding +from .types import ( + BboxPaths, + GeoParquetEncodingT, + IntFloat, +) +# I/O + +class ParquetFile: + def __init__(self, path: str, fs: ObjectStore) -> None: + """ + Construct a new ParquetFile + + This will synchronously fetch metadata from the provided path + + Args: + path: a string URL to read from. + fs: the file system interface to read from. + + Returns: + A new ParquetFile object. + """ + @property + def num_rows(self) -> int: + """The number of rows in this file.""" + @property + def num_row_groups(self) -> int: + """The number of row groups in this file.""" + @property + def schema_arrow(self) -> Schema: + """Access the Arrow schema of the generated data""" + def crs(self, column_name: str | None = None) -> CRS: + """Access the CRS of this file. + + Args: + column_name: The geometry column name. If there is more than one geometry column in the file, you must specify which you want to read. Defaults to None. + + Returns: + CRS + """ + def row_group_bounds( + self, row_group_idx: int, bbox_paths: BboxPaths | None = None + ) -> List[float]: + """Get the bounds of a single row group. + + Args: + row_group_idx: The row group index. + bbox_paths: For files written with spatial partitioning, you don't need to pass in these column names, as they'll be specified in the metadata Defaults to None. + + Returns: + The bounds of a single row group. + """ + def row_groups_bounds(self, bbox_paths: BboxPaths | None = None) -> GeometryArray: + """ + Get the bounds of all row groups. + + As of GeoParquet 1.1 you won't need to pass in these column names, as they'll be + specified in the metadata. + + Args: + bbox_paths: For files written with spatial partitioning, you don't need to pass in these column names, as they'll be specified in the metadata Defaults to None. + + Returns: + A geoarrow "box" array with bounds of all row groups. + """ + def file_bbox(self) -> List[float] | None: + """ + Access the bounding box of the given column for the entire file + + If no column name is passed, retrieves the bbox from the primary geometry column. + + An Err will be returned if the column name does not exist in the dataset + None will be returned if the metadata does not contain bounding box information. + """ + async def read_async( + self, + *, + batch_size: int | None = None, + limit: int | None = None, + offset: int | None = None, + bbox: Sequence[IntFloat] | None = None, + bbox_paths: BboxPaths | None = None, + ) -> Table: + """Perform an async read with the given options + + Args: + batch_size: _description_. Defaults to None. + limit: _description_. Defaults to None. + offset: _description_. Defaults to None. + bbox: _description_. Defaults to None. + bbox_paths: _description_. Defaults to None. + + Returns: + _description_ + """ + def read( + self, + *, + batch_size: int | None = None, + limit: int | None = None, + offset: int | None = None, + bbox: Sequence[IntFloat] | None = None, + bbox_paths: BboxPaths | None = None, + ) -> Table: + """Perform a sync read with the given options + + Args: + batch_size: _description_. Defaults to None. + limit: _description_. Defaults to None. + offset: _description_. Defaults to None. + bbox: _description_. Defaults to None. + bbox_paths: _description_. Defaults to None. + + Returns: + _description_ + """ + +class ParquetDataset: + def __init__(self, paths: Sequence[str], fs: ObjectStore) -> None: + """ + Construct a new ParquetDataset + + This will synchronously fetch metadata from all listed files. + + Args: + paths: a list of string URLs to read from. + fs: the file system interface to read from. + + Returns: + A new ParquetDataset object. + """ + @property + def num_rows(self) -> int: + """The total number of rows across all files.""" + @property + def num_row_groups(self) -> int: + """The total number of row groups across all files""" + @property + def schema_arrow(self) -> Schema: + """Access the Arrow schema of the generated data""" + def crs(self, column_name: str | None = None) -> CRS: + """Access the CRS of this file. + + Args: + column_name: The geometry column name. If there is more than one geometry column in the file, you must specify which you want to read. Defaults to None. + + Returns: + CRS + """ + async def read_async( + self, + *, + batch_size: int | None = None, + limit: int | None = None, + offset: int | None = None, + bbox: Sequence[IntFloat] | None = None, + bbox_paths: BboxPaths | None = None, + ) -> Table: + """Perform an async read with the given options + + Args: + batch_size: _description_. Defaults to None. + limit: _description_. Defaults to None. + offset: _description_. Defaults to None. + bbox: _description_. Defaults to None. + bbox_paths: _description_. Defaults to None. + + Returns: + _description_ + """ + + def read( + self, + *, + batch_size: int | None = None, + limit: int | None = None, + offset: int | None = None, + bbox: Sequence[IntFloat] | None = None, + bbox_paths: BboxPaths | None = None, + ) -> Table: + """Perform a sync read with the given options + + Args: + batch_size: _description_. Defaults to None. + limit: _description_. Defaults to None. + offset: _description_. Defaults to None. + bbox: _description_. Defaults to None. + bbox_paths: _description_. Defaults to None. + + Returns: + _description_ + """ + +class ParquetWriter: + """Writer interface for a single Parquet file. + + This allows you to write Parquet files that are larger than memory. + """ + def __init__( + self, file: str | Path | BinaryIO, schema: ArrowSchemaExportable + ) -> None: ... + def __enter__(self): ... + def __exit__(self, type, value, traceback): ... + def close(self) -> None: + """ + Close this file. + + The recommended use of this class is as a context manager, which will close the + file automatically. + """ + def is_closed(self) -> bool: + """Returns `True` if the file has already been closed.""" + def write_batch(self, batch: ArrowArrayExportable) -> None: + """Write a single RecordBatch to the Parquet file""" + def write_table(self, table: ArrowArrayExportable | ArrowStreamExportable) -> None: + """ + Write a table or stream of batches to the Parquet file + + This accepts an Arrow RecordBatch, Table, or RecordBatchReader. If a + RecordBatchReader is passed, only one batch at a time will be materialized in + memory. + + Args: + table: _description_ + """ + +class ObjectStore: + def __init__(self, root: str, options: Optional[Dict[str, str]] = None) -> None: ... + +def read_csv( + file: str | Path | BinaryIO, + geometry_column_name: str, + *, + batch_size: int = 65536, +) -> Table: + """ + Read a CSV file from a path on disk into a Table. + + Args: + file: the path to the file or a Python file object in binary read mode. + geometry_column_name: the name of the geometry column within the CSV. + batch_size: the number of rows to include in each internal batch of the table. + + Returns: + Table from CSV file. + """ + +def read_flatgeobuf( + file: Union[str, Path, BinaryIO], + *, + fs: Optional[ObjectStore] = None, + batch_size: int = 65536, + bbox: Tuple[float, float, float, float] | None = None, +) -> Table: + """ + Read a FlatGeobuf file from a path on disk or a remote location into an Arrow Table. + + Example: + + Reading from a local path: + + ```py + from geoarrow.rust.core import read_flatgeobuf + table = read_flatgeobuf("path/to/file.fgb") + ``` + + Reading from a Python file object: + + ```py + from geoarrow.rust.core import read_flatgeobuf + + with open("path/to/file.fgb", "rb") as file: + table = read_flatgeobuf(file) + ``` + + Reading from an HTTP(S) url: + + ```py + from geoarrow.rust.core import read_flatgeobuf + + url = "http://flatgeobuf.org/test/data/UScounties.fgb" + table = read_flatgeobuf(url) + ``` + + Reading from a remote file on an S3 bucket. + + ```py + from geoarrow.rust.core import ObjectStore, read_flatgeobuf + + options = { + "aws_access_key_id": "...", + "aws_secret_access_key": "...", + "aws_region": "..." + } + fs = ObjectStore('s3://bucket', options=options) + table = read_flatgeobuf("path/in/bucket.fgb", fs=fs) + ``` + + Args: + file: the path to the file or a Python file object in binary read mode. + + Other args: + fs: an ObjectStore instance for this url. This is required only if the file is at a remote + location. + batch_size: the number of rows to include in each internal batch of the table. + bbox: A spatial filter for reading rows, of the format (minx, miny, maxx, maxy). If set to + `None`, no spatial filtering will be performed. + + Returns: + Table from FlatGeobuf file. + """ + +async def read_flatgeobuf_async( + path: str, + *, + fs: Optional[ObjectStore] = None, + batch_size: int = 65536, + bbox: Tuple[float, float, float, float] | None = None, +) -> Table: + """ + Read a FlatGeobuf file from a url into an Arrow Table. + + Example: + + Reading from an HTTP(S) url: + + ```py + from geoarrow.rust.core import read_flatgeobuf_async + + url = "http://flatgeobuf.org/test/data/UScounties.fgb" + table = await read_flatgeobuf_async(url) + ``` + + Reading from an S3 bucket: + + ```py + from geoarrow.rust.core import ObjectStore, read_flatgeobuf_async + + options = { + "aws_access_key_id": "...", + "aws_secret_access_key": "...", + "aws_region": "..." + } + fs = ObjectStore('s3://bucket', options=options) + table = await read_flatgeobuf_async("path/in/bucket.fgb", fs=fs) + ``` + + Args: + path: the url or relative path to a remote FlatGeobuf file. If an argument is passed for + `fs`, this should be a path fragment relative to the root passed to the `ObjectStore` + constructor. + + Other args: + fs: an ObjectStore instance for this url. This is required for non-HTTP urls. + batch_size: the number of rows to include in each internal batch of the table. + bbox: A spatial filter for reading rows, of the format (minx, miny, maxx, maxy). If set to + `None`, no spatial filtering will be performed. + + Returns: + Table from FlatGeobuf file. + """ + +def read_geojson(file: Union[str, Path, BinaryIO], *, batch_size: int = 65536) -> Table: + """ + Read a GeoJSON file from a path on disk into an Arrow Table. + + Args: + file: the path to the file or a Python file object in binary read mode. + batch_size: the number of rows to include in each internal batch of the table. + + Returns: + Table from GeoJSON file. + """ + +def read_geojson_lines( + file: Union[str, Path, BinaryIO], *, batch_size: int = 65536 +) -> Table: + """ + Read a newline-delimited GeoJSON file from a path on disk into an Arrow Table. + + This expects a GeoJSON Feature on each line of a text file, with a newline character separating + each Feature. + + Args: + file: the path to the file or a Python file object in binary read mode. + batch_size: the number of rows to include in each internal batch of the table. + + Returns: + Table from GeoJSON file. + """ + +def read_parquet( + path: Union[str, Path, BinaryIO], + *, + fs: Optional[ObjectStore] = None, + batch_size: int = 65536, +) -> Table: + """ + Read a GeoParquet file from a path on disk into an Arrow Table. + + Example: + + Reading from a local path: + + ```py + from geoarrow.rust.core import read_parquet + table = read_parquet("path/to/file.parquet") + ``` + + Reading from an HTTP(S) url: + + ```py + from geoarrow.rust.core import read_parquet + + url = "https://raw.githubusercontent.com/opengeospatial/geoparquet/v1.0.0/examples/example.parquet" + table = read_parquet(url) + ``` + + Reading from a remote file on an S3 bucket. + + ```py + from geoarrow.rust.core import ObjectStore, read_parquet + + options = { + "aws_access_key_id": "...", + "aws_secret_access_key": "...", + "aws_region": "..." + } + fs = ObjectStore('s3://bucket', options=options) + table = read_parquet("path/in/bucket.parquet", fs=fs) + ``` + + Args: + path: the path to the file + fs: the ObjectStore to read from. Defaults to None. + batch_size: the number of rows to include in each internal batch of the table. + + Returns: + Table from GeoParquet file. + """ + +async def read_parquet_async( + path: Union[str, Path, BinaryIO], + *, + fs: Optional[ObjectStore] = None, + batch_size: int = 65536, +) -> Table: + """ + Read a GeoParquet file from a path on disk into an Arrow Table. + + Examples: + + Reading from an HTTP(S) url: + + ```py + from geoarrow.rust.core import read_parquet_async + + url = "https://raw.githubusercontent.com/opengeospatial/geoparquet/v1.0.0/examples/example.parquet" + table = await read_parquet_async(url) + ``` + + Reading from a remote file on an S3 bucket. + + ```py + from geoarrow.rust.core import ObjectStore, read_parquet_async + + options = { + "aws_access_key_id": "...", + "aws_secret_access_key": "...", + "aws_region": "..." + } + fs = ObjectStore('s3://bucket', options=options) + table = await read_parquet_async("path/in/bucket.parquet", fs=fs) + ``` + + Args: + path: the path to the file + fs: the ObjectStore to read from. Defaults to None. + batch_size: the number of rows to include in each internal batch of the table. + + Returns: + Table from GeoParquet file. + """ + +def read_postgis(connection_url: str, sql: str) -> Optional[Table]: + """ + Read a PostGIS query into an Arrow Table. + + Args: + connection_url: _description_ + sql: _description_ + + Returns: + Table from query. + """ + +async def read_postgis_async(connection_url: str, sql: str) -> Optional[Table]: + """ + Read a PostGIS query into an Arrow Table. + + Args: + connection_url: _description_ + sql: _description_ + + Returns: + Table from query. + """ + +def read_pyogrio( + path_or_buffer: Path | str | bytes, + /, + layer: int | str | None = None, + encoding: str | None = None, + columns: Sequence[str] | None = None, + read_geometry: bool = True, + skip_features: int = 0, + max_features: int | None = None, + where: str | None = None, + bbox: Tuple[float, float, float, float] | Sequence[float] | None = None, + mask=None, + fids=None, + sql: str | None = None, + sql_dialect: str | None = None, + return_fids=False, + batch_size=65536, + **kwargs, +) -> RecordBatchReader: + """ + Read from an OGR data source to an Arrow Table + + Args: + path_or_buffer: A dataset path or URI, or raw buffer. + layer: If an integer is provided, it corresponds to the index of the layer + with the data source. If a string is provided, it must match the name + of the layer in the data source. Defaults to first layer in data source. + encoding: If present, will be used as the encoding for reading string values from + the data source, unless encoding can be inferred directly from the data + source. + columns: List of column names to import from the data source. Column names must + exactly match the names in the data source, and will be returned in + the order they occur in the data source. To avoid reading any columns, + pass an empty list-like. + read_geometry: If True, will read geometry into a GeoSeries. If False, a Pandas DataFrame + will be returned instead. Default: `True`. + skip_features: Number of features to skip from the beginning of the file before + returning features. If greater than available number of features, an + empty DataFrame will be returned. Using this parameter may incur + significant overhead if the driver does not support the capability to + randomly seek to a specific feature, because it will need to iterate + over all prior features. + max_features: Number of features to read from the file. Default: `None`. + where: Where clause to filter features in layer by attribute values. If the data source + natively supports SQL, its specific SQL dialect should be used (eg. SQLite and + GeoPackage: [`SQLITE`][SQLITE], PostgreSQL). If it doesn't, the [`OGRSQL + WHERE`][OGRSQL_WHERE] syntax should be used. Note that it is not possible to overrule + the SQL dialect, this is only possible when you use the `sql` parameter. + + Examples: `"ISO_A3 = 'CAN'"`, `"POP_EST > 10000000 AND POP_EST < 100000000"` + + [SQLITE]: https://gdal.org/user/sql_sqlite_dialect.html#sql-sqlite-dialect + [OGRSQL_WHERE]: https://gdal.org/user/ogr_sql_dialect.html#where + + bbox: If present, will be used to filter records whose geometry intersects this + box. This must be in the same CRS as the dataset. If GEOS is present + and used by GDAL, only geometries that intersect this bbox will be + returned; if GEOS is not available or not used by GDAL, all geometries + with bounding boxes that intersect this bbox will be returned. + Cannot be combined with `mask` keyword. + mask: Shapely geometry, optional (default: `None`) + If present, will be used to filter records whose geometry intersects + this geometry. This must be in the same CRS as the dataset. If GEOS is + present and used by GDAL, only geometries that intersect this geometry + will be returned; if GEOS is not available or not used by GDAL, all + geometries with bounding boxes that intersect the bounding box of this + geometry will be returned. Requires Shapely >= 2.0. + Cannot be combined with `bbox` keyword. + fids : array-like, optional (default: `None`) + Array of integer feature id (FID) values to select. Cannot be combined + with other keywords to select a subset (`skip_features`, + `max_features`, `where`, `bbox`, `mask`, or `sql`). Note that + the starting index is driver and file specific (e.g. typically 0 for + Shapefile and 1 for GeoPackage, but can still depend on the specific + file). The performance of reading a large number of features usings FIDs + is also driver specific. + sql: The SQL statement to execute. Look at the sql_dialect parameter for more + information on the syntax to use for the query. When combined with other + keywords like `columns`, `skip_features`, `max_features`, + `where`, `bbox`, or `mask`, those are applied after the SQL query. + Be aware that this can have an impact on performance, (e.g. filtering + with the `bbox` or `mask` keywords may not use spatial indexes). + Cannot be combined with the `layer` or `fids` keywords. + sql_dialect : str, optional (default: `None`) + The SQL dialect the SQL statement is written in. Possible values: + + - **None**: if the data source natively supports SQL, its specific SQL dialect + will be used by default (eg. SQLite and Geopackage: [`SQLITE`][SQLITE], PostgreSQL). + If the data source doesn't natively support SQL, the [`OGRSQL`][OGRSQL] dialect is + the default. + - [`'OGRSQL'`][OGRSQL]: can be used on any data source. Performance can suffer + when used on data sources with native support for SQL. + - [`'SQLITE'`][SQLITE]: can be used on any data source. All [spatialite][spatialite] + functions can be used. Performance can suffer on data sources with + native support for SQL, except for Geopackage and SQLite as this is + their native SQL dialect. + + [OGRSQL]: https://gdal.org/user/ogr_sql_dialect.html#ogr-sql-dialect + [SQLITE]: https://gdal.org/user/sql_sqlite_dialect.html#sql-sqlite-dialect + [spatialite]: https://www.gaia-gis.it/gaia-sins/spatialite-sql-latest.html + + **kwargs + Additional driver-specific dataset open options passed to OGR. Invalid + options will trigger a warning. + + Returns: + Table + """ + +def write_csv(table: ArrowStreamExportable, file: str | Path | BinaryIO) -> None: + """ + Write a Table to a CSV file on disk. + + Args: + table: the Arrow RecordBatch, Table, or RecordBatchReader to write. + file: the path to the file or a Python file object in binary write mode. + + Returns: + None + """ + +def write_flatgeobuf( + table: ArrowStreamExportable, + file: str | Path | BinaryIO, + *, + write_index: bool = True, +) -> None: + """ + Write to a FlatGeobuf file on disk. + + Args: + table: the Arrow RecordBatch, Table, or RecordBatchReader to write. + file: the path to the file or a Python file object in binary write mode. + + Other args: + write_index: whether to write a spatial index in the FlatGeobuf file. Defaults to True. + """ + +def write_geojson( + table: ArrowStreamExportable, file: Union[str, Path, BinaryIO] +) -> None: + """ + Write to a GeoJSON file on disk. + + Note that the GeoJSON specification mandates coordinates to be in the WGS84 (EPSG:4326) + coordinate system, but this function will not automatically reproject into WGS84 for you. + + Args: + table: the Arrow RecordBatch, Table, or RecordBatchReader to write. + file: the path to the file or a Python file object in binary write mode. + + Returns: + None + """ + +def write_geojson_lines( + table: ArrowStreamExportable, file: Union[str, Path, BinaryIO] +) -> None: + """ + Write to a newline-delimited GeoJSON file on disk. + + Note that the GeoJSON specification mandates coordinates to be in the WGS84 (EPSG:4326) + coordinate system, but this function will not automatically reproject into WGS84 for you. + + Args: + table: the Arrow RecordBatch, Table, or RecordBatchReader to write. + file: the path to the file or a Python file object in binary write mode. + + Returns: + None + """ + +def write_parquet( + table: ArrowStreamExportable, + file: Union[str, Path, BinaryIO], + *, + encoding: GeoParquetEncoding | GeoParquetEncodingT = GeoParquetEncoding.WKB, +) -> None: + """ + Write an Arrow RecordBatch, Table, or RecordBatchReader to a GeoParquet file on disk. + + If a RecordBatchReader is passed, only one batch at a time will be materialized in memory. + + Args: + table: the table to write. + file: the path to the file or a Python file object in binary write mode. + encoding: the geometry encoding to use. Defaults to `GeoParquetEncoding.WKB`. + """ diff --git a/python/geoarrow-io/python/geoarrow/rust/io/enums.py b/python/geoarrow-io/python/geoarrow/rust/io/enums.py new file mode 100644 index 000000000..3fb7d8388 --- /dev/null +++ b/python/geoarrow-io/python/geoarrow/rust/io/enums.py @@ -0,0 +1,33 @@ +from enum import Enum, auto + + +class StrEnum(str, Enum): + def __new__(cls, value, *args, **kwargs): + if not isinstance(value, (str, auto)): + raise TypeError( + f"Values of StrEnums must be strings: {value!r} is a {type(value)}" + ) + return super().__new__(cls, value, *args, **kwargs) + + def __str__(self): + return str(self.value) + + def _generate_next_value_(name, *_): + return name.lower() + + +class GeoParquetEncoding(StrEnum): + """Options for geometry encoding in GeoParquet.""" + + WKB = auto() + """Use Well-Known Binary (WKB) encoding when writing GeoParquet files. + """ + + Native = auto() + """Use native GeoArrow geometry types when writing GeoParquet files. + + Supported as of GeoParquet version 1.1. + + This option provides for better read and write performance and for inferring spatial + partitioning from remote files. But it does not yet have widespread support. + """ diff --git a/python/core/tests/__init__.py b/python/geoarrow-io/python/geoarrow/rust/io/py.typed similarity index 100% rename from python/core/tests/__init__.py rename to python/geoarrow-io/python/geoarrow/rust/io/py.typed diff --git a/python/geoarrow-io/python/geoarrow/rust/io/types.py b/python/geoarrow-io/python/geoarrow/rust/io/types.py new file mode 100644 index 000000000..07866864c --- /dev/null +++ b/python/geoarrow-io/python/geoarrow/rust/io/types.py @@ -0,0 +1,18 @@ +from __future__ import annotations + +from typing import Literal, Sequence, TypedDict, Union + +IntFloat = Union[int, float] + + +GeoParquetEncodingT = Literal["wkb", "native"] +"""Acceptable strings to be passed into the `encoding` parameter for +[`write_parquet`][geoarrow.rust.core.write_parquet]. +""" + + +class BboxPaths(TypedDict): + xmin: Sequence[str] + ymin: Sequence[str] + xmax: Sequence[str] + ymax: Sequence[str] diff --git a/python/geoarrow-io/src/crs.rs b/python/geoarrow-io/src/crs.rs new file mode 100644 index 000000000..a83e62255 --- /dev/null +++ b/python/geoarrow-io/src/crs.rs @@ -0,0 +1,54 @@ +use pyo3::exceptions::PyValueError; +use pyo3::intern; +use pyo3::prelude::*; +use pyo3::types::PyTuple; +use serde_json::Value; + +use crate::error::PyGeoArrowResult; + +#[allow(clippy::upper_case_acronyms)] +#[derive(Clone, Debug)] +pub struct CRS(Value); + +impl<'py> FromPyObject<'py> for CRS { + fn extract_bound(ob: &Bound<'py, PyAny>) -> PyResult { + let py = ob.py(); + let pyproj = py.import_bound(intern!(py, "pyproj"))?; + let crs_class = pyproj.getattr(intern!(py, "CRS"))?; + + let mut ob = ob.clone(); + + // If the input is not a pyproj.CRS, call pyproj.CRS.from_user_input on it + if !ob.is_instance(&crs_class)? { + let args = PyTuple::new_bound(py, vec![ob]); + ob = crs_class.call_method1(intern!(py, "from_user_input"), args)?; + } + + let projjson_string = ob + .call_method0(intern!(py, "to_json"))? + .extract::()?; + let value = serde_json::from_str(&projjson_string) + .map_err(|err| PyValueError::new_err(err.to_string()))?; + Ok(Self(value)) + } +} + +impl CRS { + pub fn new(value: Value) -> Self { + Self(value) + } + + #[allow(dead_code)] + pub fn into_inner(self) -> Value { + self.0 + } + + pub fn to_pyproj(&self, py: Python) -> PyGeoArrowResult { + let pyproj = py.import_bound(intern!(py, "pyproj"))?; + let crs_class = pyproj.getattr(intern!(py, "CRS"))?; + + let args = PyTuple::new_bound(py, vec![serde_json::to_string(&self.0)?]); + let crs_obj = crs_class.call_method1(intern!(py, "from_json"), args)?; + Ok(crs_obj.into()) + } +} diff --git a/python/core/src/error.rs b/python/geoarrow-io/src/error.rs similarity index 100% rename from python/core/src/error.rs rename to python/geoarrow-io/src/error.rs diff --git a/python/core/src/io/csv.rs b/python/geoarrow-io/src/io/csv.rs similarity index 95% rename from python/core/src/io/csv.rs rename to python/geoarrow-io/src/io/csv.rs index e631ce1f4..7f95e0f37 100644 --- a/python/core/src/io/csv.rs +++ b/python/geoarrow-io/src/io/csv.rs @@ -1,6 +1,6 @@ use crate::error::PyGeoArrowResult; -use crate::interop::util::table_to_pytable; use crate::io::input::sync::{FileReader, FileWriter}; +use crate::util::table_to_pytable; use geoarrow::io::csv::read_csv as _read_csv; use geoarrow::io::csv::write_csv as _write_csv; use geoarrow::io::csv::CSVReaderOptions; diff --git a/python/core/src/io/flatgeobuf/async.rs b/python/geoarrow-io/src/io/flatgeobuf/async.rs similarity index 96% rename from python/core/src/io/flatgeobuf/async.rs rename to python/geoarrow-io/src/io/flatgeobuf/async.rs index 0d19d586e..796e86e8e 100644 --- a/python/core/src/io/flatgeobuf/async.rs +++ b/python/geoarrow-io/src/io/flatgeobuf/async.rs @@ -1,6 +1,6 @@ use crate::error::{PyGeoArrowError, PyGeoArrowResult}; -use crate::interop::util::table_to_pytable; use crate::io::input::{construct_reader, AnyFileReader}; +use crate::util::table_to_pytable; use geoarrow::io::flatgeobuf::read_flatgeobuf_async as _read_flatgeobuf_async; use geoarrow::io::flatgeobuf::FlatGeobufReaderOptions; use pyo3::exceptions::PyValueError; diff --git a/python/core/src/io/flatgeobuf/mod.rs b/python/geoarrow-io/src/io/flatgeobuf/mod.rs similarity index 100% rename from python/core/src/io/flatgeobuf/mod.rs rename to python/geoarrow-io/src/io/flatgeobuf/mod.rs diff --git a/python/core/src/io/flatgeobuf/sync.rs b/python/geoarrow-io/src/io/flatgeobuf/sync.rs similarity index 98% rename from python/core/src/io/flatgeobuf/sync.rs rename to python/geoarrow-io/src/io/flatgeobuf/sync.rs index 1d47606dd..733d91cf8 100644 --- a/python/core/src/io/flatgeobuf/sync.rs +++ b/python/geoarrow-io/src/io/flatgeobuf/sync.rs @@ -1,7 +1,7 @@ use crate::error::{PyGeoArrowError, PyGeoArrowResult}; -use crate::interop::util::table_to_pytable; use crate::io::input::sync::FileWriter; use crate::io::input::{construct_reader, AnyFileReader}; +use crate::util::table_to_pytable; use flatgeobuf::FgbWriterOptions; use geoarrow::io::flatgeobuf::write_flatgeobuf_with_options as _write_flatgeobuf; use geoarrow::io::flatgeobuf::{read_flatgeobuf as _read_flatgeobuf, FlatGeobufReaderOptions}; diff --git a/python/core/src/io/geojson.rs b/python/geoarrow-io/src/io/geojson.rs similarity index 94% rename from python/core/src/io/geojson.rs rename to python/geoarrow-io/src/io/geojson.rs index 365d457cb..5ffa6ad8a 100644 --- a/python/core/src/io/geojson.rs +++ b/python/geoarrow-io/src/io/geojson.rs @@ -1,6 +1,6 @@ use crate::error::PyGeoArrowResult; -use crate::interop::util::table_to_pytable; use crate::io::input::sync::{FileReader, FileWriter}; +use crate::util::table_to_pytable; use geoarrow::io::geojson::read_geojson as _read_geojson; use geoarrow::io::geojson::write_geojson as _write_geojson; use pyo3::prelude::*; diff --git a/python/core/src/io/geojson_lines.rs b/python/geoarrow-io/src/io/geojson_lines.rs similarity index 94% rename from python/core/src/io/geojson_lines.rs rename to python/geoarrow-io/src/io/geojson_lines.rs index 8142213f5..15d07c1ff 100644 --- a/python/core/src/io/geojson_lines.rs +++ b/python/geoarrow-io/src/io/geojson_lines.rs @@ -1,6 +1,6 @@ use crate::error::PyGeoArrowResult; -use crate::interop::util::table_to_pytable; use crate::io::input::sync::{FileReader, FileWriter}; +use crate::util::table_to_pytable; use geoarrow::io::geojson_lines::read_geojson_lines as _read_geojson_lines; use geoarrow::io::geojson_lines::write_geojson_lines as _write_geojson_lines; use pyo3::prelude::*; diff --git a/python/core/src/io/input/mod.rs b/python/geoarrow-io/src/io/input/mod.rs similarity index 100% rename from python/core/src/io/input/mod.rs rename to python/geoarrow-io/src/io/input/mod.rs diff --git a/python/core/src/io/input/sync.rs b/python/geoarrow-io/src/io/input/sync.rs similarity index 100% rename from python/core/src/io/input/sync.rs rename to python/geoarrow-io/src/io/input/sync.rs diff --git a/python/core/src/io/mod.rs b/python/geoarrow-io/src/io/mod.rs similarity index 85% rename from python/core/src/io/mod.rs rename to python/geoarrow-io/src/io/mod.rs index 31cdfd12b..491e90925 100644 --- a/python/core/src/io/mod.rs +++ b/python/geoarrow-io/src/io/mod.rs @@ -1,7 +1,6 @@ //! Read and write to geospatial file formats. pub mod csv; -pub mod ewkb; pub mod flatgeobuf; pub mod geojson; pub mod geojson_lines; @@ -11,5 +10,3 @@ pub mod object_store; pub mod parquet; #[cfg(feature = "async")] pub mod postgis; -pub mod wkb; -pub mod wkt; diff --git a/python/core/src/io/object_store/builder.rs b/python/geoarrow-io/src/io/object_store/builder.rs similarity index 100% rename from python/core/src/io/object_store/builder.rs rename to python/geoarrow-io/src/io/object_store/builder.rs diff --git a/python/core/src/io/object_store/mod.rs b/python/geoarrow-io/src/io/object_store/mod.rs similarity index 100% rename from python/core/src/io/object_store/mod.rs rename to python/geoarrow-io/src/io/object_store/mod.rs diff --git a/python/core/src/io/object_store/store.rs b/python/geoarrow-io/src/io/object_store/store.rs similarity index 99% rename from python/core/src/io/object_store/store.rs rename to python/geoarrow-io/src/io/object_store/store.rs index 20ef05c6f..c404adad9 100644 --- a/python/core/src/io/object_store/store.rs +++ b/python/geoarrow-io/src/io/object_store/store.rs @@ -87,7 +87,7 @@ impl From for PyErr { } } -#[pyclass(name = "ClientOptions", module = "geoarrow.rust.core._rust")] +#[pyclass(name = "ClientOptions", module = "geoarrow.rust.io._io")] #[derive(Debug, Clone, Default)] pub struct PyClientOptions { #[pyo3(get, set)] @@ -337,8 +337,6 @@ impl PyClientOptions { } } -#[pyclass(name = "ObjectStore", subclass, module = "geoarrow.rust.core._rust")] -#[derive(Debug, Clone)] /// A generic object store interface for uniformly interacting with AWS S3, Google Cloud Storage, /// and Azure Blob Storage. /// @@ -360,6 +358,8 @@ impl PyClientOptions { /// fs = ObjectStore('s3://bucket', options=options) /// table = read_flatgeobuf("path/in/bucket.fgb", fs=fs) /// ``` +#[pyclass(name = "ObjectStore", subclass, module = "geoarrow.rust.io._io")] +#[derive(Debug, Clone)] pub struct PyObjectStore { pub inner: Arc, pub rt: Arc, diff --git a/python/core/src/io/parquet/async.rs b/python/geoarrow-io/src/io/parquet/async.rs similarity index 97% rename from python/core/src/io/parquet/async.rs rename to python/geoarrow-io/src/io/parquet/async.rs index 3a5425ee8..b9c5f828e 100644 --- a/python/core/src/io/parquet/async.rs +++ b/python/geoarrow-io/src/io/parquet/async.rs @@ -1,15 +1,13 @@ use std::collections::HashMap; use std::sync::Arc; -use crate::array::PyGeometryArray; use crate::crs::CRS; use crate::error::{PyGeoArrowError, PyGeoArrowResult}; -use crate::interop::util::table_to_pytable; use crate::io::input::{construct_reader, AnyFileReader}; use crate::io::object_store::PyObjectStore; use crate::io::parquet::options::create_options; +use crate::util::table_to_pytable; -use geoarrow::array::GeometryArrayDyn; use geoarrow::error::GeoArrowError; use geoarrow::geo_traits::{CoordTrait, RectTrait}; use geoarrow::io::parquet::metadata::GeoParquetBboxCovering; @@ -18,12 +16,13 @@ use geoarrow::io::parquet::{ GeoParquetRecordBatchStream, GeoParquetRecordBatchStreamBuilder, }; use geoarrow::table::Table; +use geoarrow::GeometryArrayTrait; use object_store::{ObjectMeta, ObjectStore}; use parquet::arrow::arrow_reader::{ArrowReaderMetadata, ArrowReaderOptions}; use parquet::arrow::async_reader::ParquetObjectReader; use pyo3::exceptions::PyValueError; use pyo3::prelude::*; -use pyo3_arrow::PySchema; +use pyo3_arrow::{PyArray, PySchema}; use pythonize::depythonize_bound; use tokio::runtime::Runtime; @@ -76,7 +75,7 @@ pub fn read_parquet_async( } /// Reader interface for a single Parquet file. -#[pyclass(module = "geoarrow.rust.core._rust")] +#[pyclass(module = "geoarrow.rust.io._io")] pub struct ParquetFile { object_meta: object_store::ObjectMeta, geoparquet_meta: GeoParquetReaderMetadata, @@ -161,12 +160,13 @@ impl ParquetFile { pub fn row_groups_bounds( &self, + py: Python, bbox_paths: Option>, - ) -> PyGeoArrowResult { + ) -> PyGeoArrowResult { let paths: Option = bbox_paths.map(|x| depythonize_bound(x)).transpose()?; let bounds = self.geoparquet_meta.row_groups_bounds(paths.as_ref())?; - Ok(GeometryArrayDyn::new(Arc::new(bounds)).into()) + Ok(PyArray::new(bounds.to_array_ref(), bounds.extension_field()).to_arro3(py)?) } fn file_bbox(&self, column_name: Option<&str>) -> PyGeoArrowResult>> { @@ -312,7 +312,7 @@ async fn fetch_arrow_metadata_objects( /// Encapsulates details of reading a complete Parquet dataset possibly consisting of multiple /// files and partitions in subdirectories. -#[pyclass(module = "geoarrow.rust.core._rust")] +#[pyclass(module = "geoarrow.rust.io._io")] pub struct ParquetDataset { meta: GeoParquetDatasetMetadata, // metas: HashMap>, diff --git a/python/core/src/io/parquet/mod.rs b/python/geoarrow-io/src/io/parquet/mod.rs similarity index 100% rename from python/core/src/io/parquet/mod.rs rename to python/geoarrow-io/src/io/parquet/mod.rs diff --git a/python/core/src/io/parquet/options.rs b/python/geoarrow-io/src/io/parquet/options.rs similarity index 100% rename from python/core/src/io/parquet/options.rs rename to python/geoarrow-io/src/io/parquet/options.rs diff --git a/python/core/src/io/parquet/sync.rs b/python/geoarrow-io/src/io/parquet/sync.rs similarity index 98% rename from python/core/src/io/parquet/sync.rs rename to python/geoarrow-io/src/io/parquet/sync.rs index 2fd40208c..c546259cd 100644 --- a/python/core/src/io/parquet/sync.rs +++ b/python/geoarrow-io/src/io/parquet/sync.rs @@ -1,9 +1,9 @@ use std::fs::File; use crate::error::{PyGeoArrowError, PyGeoArrowResult}; -use crate::interop::util::table_to_pytable; use crate::io::input::sync::{FileReader, FileWriter}; use crate::io::input::{construct_reader, AnyFileReader}; +use crate::util::table_to_pytable; use geoarrow::io::parquet::{GeoParquetReaderOptions, GeoParquetRecordBatchReaderBuilder}; use parquet::arrow::arrow_reader::ArrowReaderOptions; @@ -133,7 +133,7 @@ pub fn write_parquet( Ok(()) } -#[pyclass(module = "geoarrow.rust.core._rust")] +#[pyclass(module = "geoarrow.rust.io._io")] pub struct ParquetWriter { file: Option<_GeoParquetWriter>, } diff --git a/python/core/src/io/postgis.rs b/python/geoarrow-io/src/io/postgis.rs similarity index 97% rename from python/core/src/io/postgis.rs rename to python/geoarrow-io/src/io/postgis.rs index dfbfd7be0..3461f6c89 100644 --- a/python/core/src/io/postgis.rs +++ b/python/geoarrow-io/src/io/postgis.rs @@ -1,5 +1,5 @@ use crate::error::{PyGeoArrowError, PyGeoArrowResult}; -use crate::interop::util::table_to_pytable; +use crate::util::table_to_pytable; use geoarrow::error::GeoArrowError; use geoarrow::io::postgis::read_postgis as _read_postgis; use pyo3::prelude::*; diff --git a/python/geoarrow-io/src/lib.rs b/python/geoarrow-io/src/lib.rs new file mode 100644 index 000000000..fad193149 --- /dev/null +++ b/python/geoarrow-io/src/lib.rs @@ -0,0 +1,63 @@ +use pyo3::prelude::*; +pub(crate) mod crs; +pub mod error; +// pub mod ffi; +pub mod io; +mod util; + +const VERSION: &str = env!("CARGO_PKG_VERSION"); + +#[pyfunction] +fn ___version() -> &'static str { + VERSION +} + +/// A Python module implemented in Rust. +#[pymodule] +fn _io(_py: Python, m: &Bound) -> PyResult<()> { + m.add_wrapped(wrap_pyfunction!(___version))?; + + // Async IO + + #[cfg(feature = "async")] + { + m.add_class::()?; + m.add_class::()?; + m.add_class::()?; + + m.add_function(wrap_pyfunction!( + crate::io::flatgeobuf::read_flatgeobuf_async, + m + )?)?; + m.add_function(wrap_pyfunction!(crate::io::parquet::read_parquet_async, m)?)?; + + m.add_function(wrap_pyfunction!(crate::io::postgis::read_postgis, m)?)?; + m.add_function(wrap_pyfunction!(crate::io::postgis::read_postgis_async, m)?)?; + } + + // IO + + m.add_function(wrap_pyfunction!(crate::io::csv::read_csv, m)?)?; + m.add_function(wrap_pyfunction!(crate::io::flatgeobuf::read_flatgeobuf, m)?)?; + m.add_function(wrap_pyfunction!(crate::io::geojson::read_geojson, m)?)?; + m.add_function(wrap_pyfunction!( + crate::io::geojson_lines::read_geojson_lines, + m + )?)?; + m.add_function(wrap_pyfunction!(crate::io::parquet::read_parquet, m)?)?; + m.add_function(wrap_pyfunction!(crate::io::parquet::write_parquet, m)?)?; + m.add_class::()?; + + m.add_function(wrap_pyfunction!(crate::io::csv::write_csv, m)?)?; + m.add_function(wrap_pyfunction!( + crate::io::flatgeobuf::write_flatgeobuf, + m + )?)?; + m.add_function(wrap_pyfunction!(crate::io::geojson::write_geojson, m)?)?; + m.add_function(wrap_pyfunction!( + crate::io::geojson_lines::write_geojson_lines, + m + )?)?; + + Ok(()) +} diff --git a/python/geoarrow-io/src/util.rs b/python/geoarrow-io/src/util.rs new file mode 100644 index 000000000..d93374eb4 --- /dev/null +++ b/python/geoarrow-io/src/util.rs @@ -0,0 +1,6 @@ +use pyo3_arrow::PyTable; + +pub(crate) fn table_to_pytable(table: geoarrow::table::Table) -> PyTable { + let (batches, schema) = table.into_inner(); + PyTable::try_new(batches, schema).unwrap() +} diff --git a/python/poetry.lock 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["pytest-mypy"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.9" +content-hash = "491d70836d5b13d99f3dfc3d7965c8d6dc15b14bd05483b2ea90797a4129f44c" diff --git a/python/docs/pyproject.toml b/python/pyproject.toml similarity index 63% rename from python/docs/pyproject.toml rename to python/pyproject.toml index fb2550d52..912453778 100644 --- a/python/docs/pyproject.toml +++ b/python/pyproject.toml @@ -2,8 +2,22 @@ package-mode = false [tool.poetry.dependencies] +# Note: this is only for dev dependencies python = "^3.9" +[tool.poetry.group.dev.dependencies] +pytest = "^8.0.0" +pyarrow = ">=16.0.0" +maturin = "^1.4.0" +shapely = "^2.0.2" +geopandas = "^1" +geodatasets = "^2023.12.0" +ipykernel = "^6.29.2" +pyogrio = ">=0.8" +affine = "^2.4.0" +arro3-core = ">=0.3.0" +numpy = "<2" + [tool.poetry.group.docs.dependencies] mkdocs = "^1.4.3" # https://github.com/squidfunk/mkdocs-material/issues/6983 @@ -11,7 +25,3 @@ mkdocs-material = { version = "^9.5.17", extras = ["imaging"] } mkdocstrings = { version = "^0.23.0", extras = ["python"] } mkdocs-jupyter = "^0.24.5" mike = "^2" -pyarrow = "^15.0.0" - -[tool.poetry.group.dev.dependencies] -maturin = "^1.4.0" diff --git a/python/core/tests/algorithm/__init__.py b/python/tests/__init__.py similarity index 100% rename from python/core/tests/algorithm/__init__.py rename to python/tests/__init__.py diff --git a/python/core/tests/interop/__init__.py b/python/tests/algorithm/__init__.py similarity index 100% rename from python/core/tests/interop/__init__.py rename to python/tests/algorithm/__init__.py diff --git a/python/core/tests/algorithm/test_affine_ops.py b/python/tests/algorithm/test_affine_ops.py similarity index 100% rename from python/core/tests/algorithm/test_affine_ops.py rename to python/tests/algorithm/test_affine_ops.py diff --git a/python/core/tests/algorithm/test_area.py b/python/tests/algorithm/test_area.py similarity index 100% rename from python/core/tests/algorithm/test_area.py rename to python/tests/algorithm/test_area.py diff --git a/python/core/tests/algorithm/test_explode.py b/python/tests/algorithm/test_explode.py similarity index 100% rename from python/core/tests/algorithm/test_explode.py rename to python/tests/algorithm/test_explode.py diff --git a/python/core/tests/io/__init__.py b/python/tests/interop/__init__.py similarity index 100% rename from python/core/tests/io/__init__.py rename to python/tests/interop/__init__.py diff --git a/python/core/tests/interop/test_geopandas.py b/python/tests/interop/test_geopandas.py similarity index 100% rename from python/core/tests/interop/test_geopandas.py rename to python/tests/interop/test_geopandas.py diff --git a/python/core/tests/interop/test_shapely.py b/python/tests/interop/test_shapely.py similarity index 100% rename from python/core/tests/interop/test_shapely.py rename to python/tests/interop/test_shapely.py diff --git a/python/tests/io/__init__.py b/python/tests/io/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/python/core/tests/io/test_flatgeobuf.py b/python/tests/io/test_flatgeobuf.py similarity index 73% rename from python/core/tests/io/test_flatgeobuf.py rename to python/tests/io/test_flatgeobuf.py index 69f9dee82..7a90e7e89 100644 --- a/python/core/tests/io/test_flatgeobuf.py +++ b/python/tests/io/test_flatgeobuf.py @@ -1,6 +1,7 @@ from io import BytesIO -import geoarrow.rust.core as gars +from geoarrow.rust.io import read_flatgeobuf, write_flatgeobuf +from geoarrow.rust.core import to_geopandas import geopandas as gpd import pytest from geopandas.testing import assert_geodataframe_equal @@ -10,7 +11,7 @@ def test_read_flatgeobuf(): path = FIXTURES_DIR / "flatgeobuf" / "countries.fgb" - table = gars.read_flatgeobuf(path) + table = read_flatgeobuf(path) assert len(table) == 179 # assert isinstance(gars.geometry_col(table), gars.ChunkedMultiPolygonArray) @@ -18,27 +19,27 @@ def test_read_flatgeobuf(): def test_read_flatgeobuf_file_object(): path = FIXTURES_DIR / "flatgeobuf" / "countries.fgb" with open(path, "rb") as f: - table = gars.read_flatgeobuf(f) + table = read_flatgeobuf(f) assert len(table) == 179 # assert isinstance(gars.geometry_col(table), gars.ChunkedMultiPolygonArray) def test_round_trip_flatgeobuf(): path = FIXTURES_DIR / "flatgeobuf" / "countries.fgb" - table = gars.read_flatgeobuf(path) + table = read_flatgeobuf(path) buf = BytesIO() - gars.write_flatgeobuf(table, buf) + write_flatgeobuf(table, buf) buf.seek(0) - table_back = gars.read_flatgeobuf(buf) + table_back = read_flatgeobuf(buf) assert table == table_back # type: ignore @pytest.mark.xfail(reason="fix propagate CRS") def test_matches_pyogrio(): path = FIXTURES_DIR / "flatgeobuf" / "countries.fgb" - table = gars.read_flatgeobuf(path) + table = read_flatgeobuf(path) gdf_direct = gpd.read_file(path) - gdf_from_rust = gars.to_geopandas(table) + gdf_from_rust = to_geopandas(table) assert_geodataframe_equal(gdf_direct, gdf_from_rust) diff --git a/python/core/tests/io/test_geoparquet.py b/python/tests/io/test_geoparquet.py similarity index 96% rename from python/core/tests/io/test_geoparquet.py rename to python/tests/io/test_geoparquet.py index bf888c6ee..2818c081a 100644 --- a/python/core/tests/io/test_geoparquet.py +++ b/python/tests/io/test_geoparquet.py @@ -4,13 +4,8 @@ import pyarrow as pa import pyarrow.parquet as pq import shapely -from geoarrow.rust.core import ( - ObjectStore, - ParquetFile, - from_geopandas, - read_parquet, - write_parquet, -) +from geoarrow.rust.core import from_geopandas +from geoarrow.rust.io import ObjectStore, ParquetFile, read_parquet, write_parquet from pyproj import CRS diff --git a/python/core/tests/io/test_pyogrio.py b/python/tests/io/test_pyogrio.py similarity index 55% rename from python/core/tests/io/test_pyogrio.py rename to python/tests/io/test_pyogrio.py index f0af8c1dc..a1c4c537e 100644 --- a/python/core/tests/io/test_pyogrio.py +++ b/python/tests/io/test_pyogrio.py @@ -1,15 +1,14 @@ 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rename to python/tests/utils.py