Build failure on `kokkos_assembly.cpp` #1580

fvanmaele · 2024-03-26T11:45:48Z

fvanmaele
Mar 26, 2024

I get the following error:

[ 98%] Linking CXX executable custom-matrix-format
/home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp: In lambda function:
/home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:127:43: error: ‘abs’ is not a member of ‘Kokkos::Experimental’
  127 |             lsum += Kokkos::Experimental::abs(
      |                                           ^~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:127:43: note: suggested alternatives:
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/cstdlib:77,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ext/string_conversions.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/basic_string.h:6608,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/string:55,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/locale_classes.h:40,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/ios_base.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ostream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/iostream:39,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:33:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/std_abs.h:56:3: note:   ‘abs’
   56 |   abs(long __i) { return __builtin_labs(__i); }
      |   ^~~
In file included from /usr/include/Kokkos_Complex.hpp:28,
                 from /usr/include/Kokkos_MathematicalSpecialFunctions.hpp:31,
                 from /usr/include/Kokkos_Core.hpp:54,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/complex:626:5: note:   ‘std::abs’
  626 |     abs(const complex<_Tp>& __z) { return __complex_abs(__z.__rep()); }
      |     ^~~
In file included from /usr/include/Kokkos_MathematicalSpecialFunctions.hpp:31,
                 from /usr/include/Kokkos_Core.hpp:54,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/include/Kokkos_Complex.hpp:677:33: note:   ‘Kokkos::abs’
  677 | KOKKOS_INLINE_FUNCTION RealType abs(const complex<RealType>& x) {
      |                                 ^~~
In file included from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/matrix_data.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/mtx_io.hpp:40,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/batch_multi_vector.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/batch_lin_op.hpp:43,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/ginkgo.hpp:43,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:40:
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:727:49: note:   ‘gko::abs’
  727 | GKO_ENABLE_UNARY_RANGE_OPERATION(abs_operation, abs,
      |                                                 ^~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:648:9: note: in definition of macro ‘GKO_BIND_UNARY_RANGE_OPERATION_TO_OPERATOR’
  648 |         _operator_name(const range<Accessor>& operand)                       \
      |         ^~~~~~~~~~~~~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:727:1: note: in expansion of macro ‘GKO_ENABLE_UNARY_RANGE_OPERATION’
  727 | GKO_ENABLE_UNARY_RANGE_OPERATION(abs_operation, abs,
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/mutex:39,
                 from /usr/include/Serial/Kokkos_Serial.hpp:33,
                 from /usr/include/decl/Kokkos_Declare_SERIAL.hpp:21,
                 from /usr/include/KokkosCore_Config_DeclareBackend.hpp:22,
                 from /usr/include/Kokkos_Core.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/chrono:393:7: note:   ‘std::chrono::abs’
  393 |       abs(duration<_Rep, _Period> __d)
      |       ^~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/cstdlib:75,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ext/string_conversions.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/basic_string.h:6608,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/string:55,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/locale_classes.h:40,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/ios_base.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ostream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/iostream:39,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:33:
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
  980 | extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur;
      |            ^~~
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:129:39: error: ‘abs’ is not a member of ‘Kokkos::Experimental’
  129 |                 Kokkos::Experimental::abs(correct_u(xi)));
      |                                       ^~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:129:39: note: suggested alternatives:
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/cstdlib:77,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ext/string_conversions.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/basic_string.h:6608,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/string:55,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/locale_classes.h:40,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/ios_base.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ostream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/iostream:39,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:33:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/std_abs.h:56:3: note:   ‘abs’
   56 |   abs(long __i) { return __builtin_labs(__i); }
      |   ^~~
In file included from /usr/include/Kokkos_Complex.hpp:28,
                 from /usr/include/Kokkos_MathematicalSpecialFunctions.hpp:31,
                 from /usr/include/Kokkos_Core.hpp:54,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/complex:626:5: note:   ‘std::abs’
  626 |     abs(const complex<_Tp>& __z) { return __complex_abs(__z.__rep()); }
      |     ^~~
In file included from /usr/include/Kokkos_MathematicalSpecialFunctions.hpp:31,
                 from /usr/include/Kokkos_Core.hpp:54,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/include/Kokkos_Complex.hpp:677:33: note:   ‘Kokkos::abs’
  677 | KOKKOS_INLINE_FUNCTION RealType abs(const complex<RealType>& x) {
      |                                 ^~~
In file included from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/matrix_data.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/mtx_io.hpp:40,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/batch_multi_vector.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/batch_lin_op.hpp:43,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/ginkgo.hpp:43,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:40:
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:727:49: note:   ‘gko::abs’
  727 | GKO_ENABLE_UNARY_RANGE_OPERATION(abs_operation, abs,
      |                                                 ^~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:648:9: note: in definition of macro ‘GKO_BIND_UNARY_RANGE_OPERATION_TO_OPERATOR’
  648 |         _operator_name(const range<Accessor>& operand)                       \
      |         ^~~~~~~~~~~~~~
/home/archie/source/repos/asc-installer/dependencies/ginkgo/include/ginkgo/core/base/range.hpp:727:1: note: in expansion of macro ‘GKO_ENABLE_UNARY_RANGE_OPERATION’
  727 | GKO_ENABLE_UNARY_RANGE_OPERATION(abs_operation, abs,
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/mutex:39,
                 from /usr/include/Serial/Kokkos_Serial.hpp:33,
                 from /usr/include/decl/Kokkos_Declare_SERIAL.hpp:21,
                 from /usr/include/KokkosCore_Config_DeclareBackend.hpp:22,
                 from /usr/include/Kokkos_Core.hpp:45,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:39:
/usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/chrono:393:7: note:   ‘std::chrono::abs’
  393 |       abs(duration<_Rep, _Period> __d)
      |       ^~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/cstdlib:75,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ext/string_conversions.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/basic_string.h:6608,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/string:55,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/locale_classes.h:40,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/bits/ios_base.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/ostream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/11.4.0/include/c++/iostream:39,
                 from /home/archie/source/repos/asc-installer/dependencies/ginkgo/examples/kokkos_assembly/kokkos_assembly.cpp:33:
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
  980 | extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur;
      |            ^~~
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
/usr/include/stdlib.h:980:12: note:   ‘std::abs’
[ 98%] Built target custom-matrix-format
[ 98%] Linking CXX executable simple-solver-logging
[ 98%] Built target simple-solver-logging
make[2]: *** [examples/kokkos_assembly/CMakeFiles/kokkos-assembly.dir/build.make:76: examples/kokkos_assembly/CMakeFiles/kokkos-assembly.dir/kokkos_assembly.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:3853: examples/kokkos_assembly/CMakeFiles/kokkos-assembly.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 98%] Linking CXX executable preconditioner-export
[ 98%] Built target preconditioner-export
[100%] Linking CXX executable distributed-solver
[100%] Built target distributed-solver
make: *** [Makefile:156: all] Error 2

CUDA 11.7, g++ (Arch) 11.4.0, trilinos 15.0.0

cmake -L output:

BUILD_SHARED_LIBS:BOOL=ON
BUILD_TESTING:BOOL=ON
CCACHE_PROGRAM:FILEPATH=CCACHE_PROGRAM-NOTFOUND
CMAKE_BUILD_TYPE:STRING=RelWithDebInfo
CMAKE_CXX_EXTENSIONS:BOOL=OFF
CMAKE_INSTALL_PREFIX:PATH=/home/archie/install
GINKGO_BENCHMARK_ENABLE_TUNING:BOOL=OFF
GINKGO_BUILD_BENCHMARKS:BOOL=OFF
GINKGO_BUILD_CUDA:BOOL=ON
GINKGO_BUILD_DOC:BOOL=OFF
GINKGO_BUILD_EXAMPLES:BOOL=ON
GINKGO_BUILD_EXTLIB_EXAMPLE:BOOL=OFF
GINKGO_BUILD_HIP:BOOL=OFF
GINKGO_BUILD_HWLOC:BOOL=ON
GINKGO_BUILD_MPI:BOOL=ON
GINKGO_BUILD_OMP:BOOL=ON
GINKGO_BUILD_PAPI_SDE:BOOL=OFF
GINKGO_BUILD_REFERENCE:BOOL=ON
GINKGO_BUILD_SYCL:BOOL=OFF
GINKGO_BUILD_TESTS:BOOL=OFF
GINKGO_CHECK_CIRCULAR_DEPS:BOOL=OFF
GINKGO_CI_TEST_OMP_PARALLELISM:STRING=4
GINKGO_COMPILER_FLAGS:STRING=-Wpedantic
GINKGO_CONFIG_LOG_DETAILED:BOOL=OFF
GINKGO_CUDA_ARCHITECTURES:STRING=Auto
GINKGO_CUDA_COMPILER_FLAGS:STRING=
GINKGO_DEVEL_TOOLS:BOOL=OFF
GINKGO_DPCPP_SINGLE_MODE:BOOL=OFF
GINKGO_EXPORT_BUILD_DIR:BOOL=OFF
GINKGO_FAST_TESTS:BOOL=OFF
GINKGO_FORCE_GPU_AWARE_MPI:BOOL=OFF
GINKGO_HIPCONFIG_PATH:FILEPATH=GINKGO_HIPCONFIG_PATH-NOTFOUND
GINKGO_HIP_AMDGPU:STRING=
GINKGO_HIP_AMD_UNSAFE_ATOMIC:BOOL=ON
GINKGO_HIP_CLANG_COMPILER_FLAGS:STRING=
GINKGO_HIP_COMPILER_FLAGS:STRING=
GINKGO_HIP_NVCC_COMPILER_FLAGS:STRING=
GINKGO_INSTALL_RPATH:BOOL=ON
GINKGO_INSTALL_RPATH_DEPENDENCIES:BOOL=OFF
GINKGO_INSTALL_RPATH_ORIGIN:BOOL=ON
GINKGO_JACOBI_FULL_OPTIMIZATIONS:BOOL=OFF
GINKGO_MIXED_PRECISION:BOOL=OFF
GINKGO_RUN_EXAMPLES:BOOL=ON
GINKGO_SKIP_DEPENDENCY_UPDATE:BOOL=ON
GINKGO_TEST_NONDEFAULT_STREAM:BOOL=OFF
GINKGO_VERBOSE_LEVEL:STRING=1
GINKGO_WITH_CCACHE:BOOL=OFF
GINKGO_WITH_CLANG_TIDY:BOOL=OFF
GINKGO_WITH_IWYU:BOOL=OFF
GTest_DIR:PATH=/usr/lib/cmake/GTest
Ginkgo_ASAN_SUPPORTED:STRING=TRUE
Ginkgo_COVERAGE_SUPPORTED:STRING=TRUE
Ginkgo_LSAN_SUPPORTED:STRING=TRUE
HIP_PATH:PATH=/opt/rocm/hip
Kokkos_DIR:PATH=/usr/lib/cmake/Kokkos
METIS_INCLUDE_DIR:PATH=/usr/include
METIS_LIBRARY:FILEPATH=/usr/lib/libmetis.so
NUMA_LIBRARY:FILEPATH=/usr/lib/libnuma.so
NUMA_ROOT_DIR:PATH=/usr
OpenCV_DIR:PATH=OpenCV_DIR-NOTFOUND
PerfStubs_DIR:PATH=PerfStubs_DIR-NOTFOUND
VTune_EXECUTABLE:FILEPATH=VTune_EXECUTABLE-NOTFOUND
VTune_LIBRARY:FILEPATH=VTune_LIBRARY-NOTFOUND
gflags_DIR:PATH=/usr/lib/cmake/gflags
nlohmann_json_DIR:PATH=/usr/share/cmake/nlohmann_json

MarcelKoch · 2024-03-26T12:10:09Z

MarcelKoch
Mar 26, 2024
Maintainer

This issue is known. It is due to interface changes from Kokkos 3.x to 4.x. The current example only works with Kokkos < 4.0, but there will be an overhaul in the next release.

2 replies

yhmtsai Mar 26, 2024
Collaborator

maybe we can create a small pr to specify the kokkos version 3.x now and then when we adapt the version 4 for changing it?

MarcelKoch Mar 26, 2024
Maintainer

You're right, it shouldn't be too much to change.

tcojean · 2024-05-29T16:32:35Z

tcojean
May 29, 2024
Maintainer

FYI, as we are preparing the next release, this should have been fixed in develop and will be propagated to the next version.

0 replies

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Build failure on `kokkos_assembly.cpp` #1580

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Build failure on kokkos_assembly.cpp #1580

fvanmaele Mar 26, 2024

Replies: 2 comments · 2 replies

MarcelKoch Mar 26, 2024 Maintainer

yhmtsai Mar 26, 2024 Collaborator

MarcelKoch Mar 26, 2024 Maintainer

tcojean May 29, 2024 Maintainer

Build failure on `kokkos_assembly.cpp` #1580

fvanmaele
Mar 26, 2024

Replies: 2 comments 2 replies

MarcelKoch
Mar 26, 2024
Maintainer

yhmtsai Mar 26, 2024
Collaborator

MarcelKoch Mar 26, 2024
Maintainer

tcojean
May 29, 2024
Maintainer