-
Notifications
You must be signed in to change notification settings - Fork 0
/
info.html
810 lines (711 loc) · 23.9 KB
/
info.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<meta name="generator" content="pandoc" />
<meta http-equiv="X-UA-Compatible" content="IE=EDGE" />
<title>info.knit</title>
<script src="site_libs/header-attrs-2.16/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/journal.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>
<style type="text/css">code{white-space: pre;}</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
img {
max-width:100%;
}
.tabbed-pane {
padding-top: 12px;
}
.html-widget {
margin-bottom: 20px;
}
button.code-folding-btn:focus {
outline: none;
}
summary {
display: list-item;
}
details > summary > p:only-child {
display: inline;
}
pre code {
padding: 0;
}
</style>
<style type="text/css">
.dropdown-submenu {
position: relative;
}
.dropdown-submenu>.dropdown-menu {
top: 0;
left: 100%;
margin-top: -6px;
margin-left: -1px;
border-radius: 0 6px 6px 6px;
}
.dropdown-submenu:hover>.dropdown-menu {
display: block;
}
.dropdown-submenu>a:after {
display: block;
content: " ";
float: right;
width: 0;
height: 0;
border-color: transparent;
border-style: solid;
border-width: 5px 0 5px 5px;
border-left-color: #cccccc;
margin-top: 5px;
margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
}
.dropdown-submenu.pull-left>.dropdown-menu {
left: -100%;
margin-left: 10px;
border-radius: 6px 0 6px 6px;
}
</style>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark the anchor link active (and if it's in a dropdown, also mark that active)
var dropdown = menuAnchor.closest('li.dropdown');
if (window.bootstrap) { // Bootstrap 4+
menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
} else { // Bootstrap 3
menuAnchor.parent().addClass('active');
dropdown.addClass('active');
}
// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>
<!-- tabsets -->
<style type="text/css">
.tabset-dropdown > .nav-tabs {
display: inline-table;
max-height: 500px;
min-height: 44px;
overflow-y: auto;
border: 1px solid #ddd;
border-radius: 4px;
}
.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "";
border: none;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}
.tabset-dropdown > .nav-tabs > li.active {
display: block;
}
.tabset-dropdown > .nav-tabs > li > a,
.tabset-dropdown > .nav-tabs > li > a:focus,
.tabset-dropdown > .nav-tabs > li > a:hover {
border: none;
display: inline-block;
border-radius: 4px;
background-color: transparent;
}
.tabset-dropdown > .nav-tabs.nav-tabs-open > li {
display: block;
float: none;
}
.tabset-dropdown > .nav-tabs > li {
display: none;
}
</style>
<!-- code folding -->
<style type="text/css">
#TOC {
margin: 25px 0px 20px 0px;
}
@media (max-width: 768px) {
#TOC {
position: relative;
width: 100%;
}
}
@media print {
.toc-content {
/* see https://github.com/w3c/csswg-drafts/issues/4434 */
float: right;
}
}
.toc-content {
padding-left: 30px;
padding-right: 40px;
}
div.main-container {
max-width: 1200px;
}
div.tocify {
width: 20%;
max-width: 260px;
max-height: 85%;
}
@media (min-width: 768px) and (max-width: 991px) {
div.tocify {
width: 25%;
}
}
@media (max-width: 767px) {
div.tocify {
width: 100%;
max-width: none;
}
}
.tocify ul, .tocify li {
line-height: 20px;
}
.tocify-subheader .tocify-item {
font-size: 0.90em;
}
.tocify .list-group-item {
border-radius: 0px;
}
</style>
</head>
<body>
<div class="container-fluid main-container">
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">Haley Oleynik</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">
<span class="fa fa-ship"></span>
Home
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
<span class="fa fa-fish"></span>
Research
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="https://scholar.google.com/citations?user=0zgwzSkAAAAJ&hl=en">
<span class="fa fa-copy"></span>
Publications (Google Scholar)
</a>
</li>
<li>
<a href="Presentations.html">
<span class="fa fa-chart-area"></span>
Presentations
</a>
</li>
</ul>
</li>
<li>
<a href="collaborate.html">
<span class="fa fa-paperclip"></span>
CV
</a>
</li>
<li>
<a href="Contact.html">
<span class="fa fa-at"></span>
Contact
</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a href="https://github.com/haleyoleynik">
<span class="fa fa-github fa-lg"></span>
</a>
</li>
<li>
<a href="https://twitter.com/fish_follower">
<span class="fa fa-twitter fa-lg"></span>
</a>
</li>
<li>
<a href="info.html">
<span class="fa fa-info-circle fa-la"></span>
</a>
</li>
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div id="header">
</div>
<div id="ramblings-and-resources" class="section level1">
<h1>Ramblings and Resources</h1>
<p>I’ll start with R. My personal philosophy is that R can do anything,
and I’ve yet to be proven wrong. I want to share the wonders of R, but I
should start by saying there are <strong>thousands</strong> of amazing
resources online for R, coding, data analysis, GitHub, etc., some of
which I’ll link below. What I share here is definitely repeated. So
maybe this is more a resource for myself than anyone else. But much of
what I have learned came from others’ personal websites, blogs, and
answers on stack exchange. So maybe someone out there googling random
things on the interweb will find these resources.. I can only hope.</p>
<p>Please <a
href="https://haleyoleynik-noaa.github.io/HaleyOleynik/Contact.html">contact
me</a> if you have questions or want help!</p>
<div id="my-git-workflow" class="section level2">
<h2>My Git Workflow</h2>
<p>I use <a href="https://desktop.github.com/">GitHub Desktop</a> for my
workflow. But you can also use the command line or RStudio to do
everything I’m doing below. I’ll share how I use GitHub Desktop, and
maybe later I’ll share some other workflows, so stay tuned! This
workflow was adapted from Eli Holmes’ <a
href="https://rverse-tutorials.github.io/RWorkflow-NWFSC-2021/">Practical
R Workflow for Scientists Course</a>, which you can follow along with
online. It’s a GREAT resource for begining your GitHub and RStudio
journey!</p>
<div id="create-a-repository" class="section level3">
<h3>Create a repository</h3>
<ol style="list-style-type: decimal">
<li>Go to GitHub and create a new repository (the + in the top
right)</li>
<li>Check:</li>
</ol>
<ul class="task-list">
<li><input type="checkbox" disabled="" checked="" />
add <code>Readme.md</code></li>
<li><input type="checkbox" disabled="" checked="" />
add <code>.gitignore</code> (type R to get the R .gitignore)</li>
</ul>
</div>
<div id="clone-your-repository" class="section level3">
<h3>Clone your repository</h3>
<ol style="list-style-type: decimal">
<li>Copy the url of your new repo</li>
<li>Open GitHub Desktop</li>
<li>Click <strong>File > Clone Repository…</strong></li>
<li>In the popup window, click the <strong>URL</strong> tab to the right
and paste in the URL of your repository</li>
<li>Double check that you have the right folder for the Local Path. I
keep all my repositories in <code>Documents/GitHub</code> so they are
easier to find.</li>
<li>Click <strong>Clone</strong>.</li>
<li>Open RStudio and click <strong>New Project</strong> (upper right,
blue cube with R)</li>
<li>Click <strong>New Project… > Existing Directory</strong></li>
<li>Navigate to the folder you just cloned from above and click
<strong>Create Project</strong></li>
</ol>
</div>
<div id="make-changes-commit-and-push" class="section level3">
<h3>Make changes, commit, and push</h3>
<ol style="list-style-type: decimal">
<li>Make changes to your code or add a file (this can also be done by
simply adding a file to that folder, doesn’t have to be done in
RStudio)</li>
<li>Switch to GitHub Desktop</li>
<li>Click the changes that you want to commit (check the little checkbox
next to the file). Add a comment to the first line and click
<strong>Commit</strong>.</li>
<li>Click the <strong>green up arrow</strong> to Push to GitHub.</li>
<li>Go back to your GitHub repo online, your changes are now there!</li>
</ol>
</div>
</div>
<div id="how-i-built-this-website" class="section level2">
<h2>How I built this website</h2>
<p>R and GitHub did this, not me! Here’s a step-by-step of how I built
this website, so that even someone with little to no experience with R
or GitHub can do it too - because not all scientists use these
platforms, but I think all scientists should have a personal website
that they don’t have to wrestle with wordpress, wix, squarespace, etc.
to build (believe me, I’ve been there). I first learned of this in Ben
Best’s <a href="https://noaa-iea.github.io/r3-train/index.html">R3
Workshop</a>. All the workshop materials and recordings are online, so
check it out if you want more RStudio learnings.</p>
<blockquote>
<p>picture step-by-step coming soon</p>
</blockquote>
<div id="create-a-repo" class="section level3">
<h3>Create a repo</h3>
<p>Like I showed above, <a href="">create a new repo in GitHub</a>.</p>
</div>
<div id="clone-the-repo-to-your-computers-directory"
class="section level3">
<h3>Clone the repo to your computers directory</h3>
<p>Use your workflow of choice to clone the repo from GitHub to your
computers directory. If you’ve never used GitHub before, and you created
it to make this website (go you!), the easiest way is to do this all in
RStudio,</p>
<ol style="list-style-type: decimal">
<li>Copy the URL of your new repo</li>
<li>Open an RStudio window</li>
<li>Go to <strong>File > New Project… > Version Control > GIT
> Clone</strong></li>
<li>Paste the URL and set the directory to where you want this project
to land on your computer</li>
</ol>
</div>
<div id="create-a-home-page-and-a-_site.yml" class="section level3">
<h3>Create a home page and a <code>_site.yml</code></h3>
<p>Your RStudio project is now open! Congrats! In the top right corner
you should see the R cube with the name of your repo next to it. In the
bottom right window you should see, in the ‘Files’ tab, you are in the
project directory. Now,</p>
<ol style="list-style-type: decimal">
<li>Go to <strong>File > New File > R Markdown…</strong></li>
<li>Give this a name, not super important, and click ‘OK’</li>
<li>There will be a bunch of text in this file. Delete it all and put a
header with your webpage name, here’s what mine looks like:</li>
</ol>
<pre><code>---
title: "Haley Oleynik (she/her)"
---</code></pre>
<ol start="4" style="list-style-type: decimal">
<li><p>Type all your info below this, <a
href="https://github.com/HaleyOleynik-NOAA/HaleyOleynik/blob/main/index.Rmd">here’s
what my whole index file</a> looks like for reference. Here’s a great
short-and-sweet <a
href="https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdf">guide
on R Markdown</a>, if you’ve never done it. It’s seriously very easy, it
just takes a little while to remember all the formatting
tricks.</p></li>
<li><p>Add more pages! Save another page, maybe
<code>research.Rmd</code>:</p></li>
</ol>
<pre><code>---
title: "Research"
---
Research description, publications, etc.</code></pre>
<div
id="now-well-make-a-_site.yml-page.-rstudio-needs-this-to-build-the-website."
class="section level4">
<h4>Now we’ll make a <code>_site.yml</code> page. RStudio needs this to
build the website.</h4>
<ol style="list-style-type: decimal">
<li>Create a new text file by <strong>File > New File > Text
File</strong> and paste the following:</li>
</ol>
<pre><code>name: "Haley Oleynik"
navbar:
title: "Haley Oleynik"
left:
- text: "Home"
href: index.html
- text: "Research"
href: research.Rmd
output_dir: "."</code></pre>
<ol start="2" style="list-style-type: decimal">
<li>Save the file as <code>_site.yml</code></li>
</ol>
</div>
</div>
<div id="render-your-webpage" class="section level3">
<h3>Render your webpage</h3>
<ol style="list-style-type: decimal">
<li><p>Now, to build the website all you’ll need to do is run
<code>rmarkdown::render_site()</code> in your R console.</p></li>
<li><p>To see how it looks, <strong>knit</strong> your
<code>index.Rmd</code> or <code>Research.Rmd</code>. You’ll be able to
view the whole site locally, in your viewer pane (or in a pop up
window).</p></li>
<li><p>Now <code>commit</code> and <code>push</code> the changes you’ve
made to the files.</p></li>
</ol>
</div>
<div id="activate-github-pages" class="section level3">
<h3>Activate GitHub Pages</h3>
<p>Back in your online GitHub repository:</p>
<ol style="list-style-type: decimal">
<li>Go to <strong>Settings</strong> at the far right</li>
<li>Scroll down and click on <strong>Pages</strong> on the left
sidebar</li>
<li>Choose <code>Branch: main, folder / (root)</code></li>
<li>Click <strong>Save</strong></li>
<li>The URL for your new website will show up, yay! Copy it and paste it
where you need it.</li>
</ol>
</div>
<div id="make-it-fancy" class="section level3">
<h3>Make it fancy</h3>
<p>Now to the fun stuff! These are things I learned slowly while
building my website. Since you’re on my website you can see some of
these details in action. For example, the theme (journal) and all the
icons on the top menu!</p>
<div id="webpage-style-theme" class="section level4">
<h4>Webpage style / theme</h4>
<p>Okay this is the easiest, but for me it was surprisingly hard to find
all my options. I finally found this awesome resource: <a
href="https://bootswatch.com/">A THEME GALLERY</a>.</p>
<p>Another way to try them out is to just change the theme and
<strong>knit</strong> locally to see how they look (I think I did this
with almost every theme…)</p>
<p>Here’s a list of all the theme options:</p>
<pre><code>“default”, “bootstrap”, “cerulean”, “cosmo”, “darkly”, “flatly”, “journal”, “lumen”, “paper”, “readable”, “sandstone”, “simplex”, “spacelab”, “united”, “yeti”</code></pre>
<p>To implement a theme, go to your recently created
<code>_site.yml</code> and add the last few lines:</p>
<pre><code>name: "Haley Oleynik"
navbar:
title: "Haley Oleynik"
left:
- text: "Home"
href: index.html
- text: "Research"
href: research.Rmd
output_dir: "."
output:
html_document:
theme: journal</code></pre>
<p>Now <code>rmarkdown::render_site()</code> in your R console and
<strong>knit</strong> one of your pages again to view it locally. Don’t
forget to commit and push to GitHub so these changes are made on your
real site!</p>
</div>
<div id="add-icons" class="section level4">
<h4>Add icons</h4>
<p>Okay, this is super easy, there are a bunch of font awesome icons
built in so you can just call them in your <code>_site.yml</code>. Here
is the <a href="https://fontawesome.com/v5/search">ICON GALLERY</a>
(just be sure to choose the free icons). Once you’ve picked out your
icons, all you do is add them to your <code>_site.yml</code> like I have
below:</p>
<pre><code>name: "Haley Oleynik"
navbar:
title: "Haley Oleynik"
left:
- text: "Home"
icon: fa-ship
href: index.html
- text: "Research"
icon: fa-fish
menu:
- text: "Publications"
icon: fa-copy
href: Publications.html
- text: "Presentations"
icon: fa-file-powerpoint
href: Presentations.html
- text: "CV"
icon: fa-paperclip
href: collaborate.html
- text: "Contact"
icon: fa-at
href: Contact.html
right:
- icon: fa-github fa-lg
href: https://github.com/haleyoleynik-noaa
- icon: fa-twitter fa-lg
href: https://twitter.com/fish_follower
- icon: fa-info-circle fa-la
href: info.html
output_dir: "."
output:
html_document:
theme: journal
highlight: textmate
#css: style.css
fig_caption: true
toc: true
toc_float: true</code></pre>
<p>You can even have only icons with no text, shown under the
<strong>right</strong> header for my github and twitter links.</p>
<p>And if you want a <strong>drop down menu</strong>, like I have for my
<strong>research</strong>, you can add that second level menu as shown
above.</p>
</div>
<div id="add-images" class="section level4">
<h4>Add images</h4>
<p>This is easy, just save them to an <code>images</code> folder in your
GitHub repo and then call them like this anywhere in your
<code>.Rmd</code> file:</p>
<pre><code></code></pre>
</div>
</div>
</div>
<div id="resources-for-quant-ecologists-and-marine-scientists"
class="section level2">
<h2>Resources for quant ecologists and marine scientists</h2>
<div id="seminar-series" class="section level3">
<h3>Seminar Series</h3>
<p>Here’s a list of seminar series I mostly learned about while I was a
Knauss fellow, but that I still now attend as a PhD student. Sometimes
it’s nice to get out of your PhD bubble and see some research going on
at different institutions or outside your field entirely.</p>
<ol style="list-style-type: decimal">
<li><a
href="https://oceans.ubc.ca/news-and-events/iof-seminars/quantitive-seminars/">UBC
Institute for the Oceans and Fisheries Quant Seminar</a></li>
<li><a
href="https://libguides.library.noaa.gov/c.php?g=813045&p=8437730">NOAA
Central Library Seminar Series</a> - I love the stock assessment seminar
and the Knauss lunch and learn series!</li>
<li><a
href="https://fish.uw.edu/news-events/seminar-series/quantitative-seminar/">UW
School of Aquatic and Fishery Science Quant Seminar</a></li>
<li><a href="http://puntlab.washington.edu/fisheries-think-tank/">UW
SAFS Fisheries Think Tank</a></li>
<li><a
href="https://www.fisheries.noaa.gov/nwfsc-monster-seminar-jam">NWFSC
Monster Jam seminar</a></li>
<li><a
href="https://iphc.int/the-commission/iphc-seminar-series">International
Pacific Halibut Commission Seminar Series</a></li>
<li><a
href="https://www.fisheries.noaa.gov/alaska/outreach-and-education/2021-alaska-fisheries-science-center-groundfish-seminar-series">Alaska
Groundfish seminar series</a></li>
<li><a
href="https://www.star.nesdis.noaa.gov/star/NOAAScienceSeminars.php">ALL
NOAA science seminars</a> - you can also add these to your calendar and
sign up for a weekly email digest!</li>
</ol>
</div>
</div>
</div>
</div>
</div>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open');
});
});
</script>
<!-- code folding -->
<script>
$(document).ready(function () {
// temporarily add toc-ignore selector to headers for the consistency with Pandoc
$('.unlisted.unnumbered').addClass('toc-ignore')
// move toc-ignore selectors from section div to header
$('div.section.toc-ignore')
.removeClass('toc-ignore')
.children('h1,h2,h3,h4,h5').addClass('toc-ignore');
// establish options
var options = {
selectors: "h1,h2,h3",
theme: "bootstrap3",
context: '.toc-content',
hashGenerator: function (text) {
return text.replace(/[.\\/?&!#<>]/g, '').replace(/\s/g, '_');
},
ignoreSelector: ".toc-ignore",
scrollTo: 0
};
options.showAndHide = true;
options.smoothScroll = true;
// tocify
var toc = $("#TOC").tocify(options).data("toc-tocify");
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>