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<!DOCTYPE html>
<meta charset="utf-8">
<link rel="stylesheet" href="css/taf.css">
<title>TAF - Transparent Assessment Framework</title>
<body>
<h1>Transparent Assessment Framework</h1>
<h3>Development page</h3>
<p><img src="jpg/taf-chainring.jpg" alt="TAF logo" width="70">
<p><a href="http://taf.ices.dk">taf.ices.dk</a><br>
<a href="pdf/taf-flyer.pdf">taf-flyer.pdf</a><br>
<a href="https://www.youtube.com/watch?v=FweJbr9hfdY">video</a> &
<a href="https://github.com/ices-taf/doc/tree/master/tutorial-1/README.md">tutorial</a>
<h2>Aim</h2>
<p>To implement a framework to organize <em>data</em>, <em>methods</em>, and
<em>results</em> used in ICES assessments, so they are easy to <em>find</em> and
<em>rerun</em> later with new data.
<h2>System workflow</h2>
<p style="margin-bottom:4ex"><a href="png/taf-diagram.png">
<img src="png/taf-diagram.png" alt="TAF diagram" width="640"></a>
<p>Each assessment is organized in folders data → input → model →
output.<br>
These folders contain R scripts and other files that perform the following
tasks:
<dl>
<dt><strong>data</strong>
<dd>read fine-resolution data, produce aggregated data in standard CSV format
<dt><strong>input</strong>
<dd>read CSV data, produce input data in model-specific format
<dt><strong>model</strong>
<dd>run model with input data, produce results in model-specific format
<dt><strong>output</strong>
<dd>read results in model-specific format, produce output in standard CSV
format
</dl>
<p>An <em>assessment</em> in the Transparent Assessment Framework (TAF) is a
broad term used for any analysis for a given stock, using R scripts and the
above folder structure. So TAF assessments can be analytical stock assessments,
data-limited advisory procedures, forecasts, etc.
<h2>Development</h2>
<h3>GitHub repositories</h3>
<dl>
<dt><a href="https://github.com/ices-tools-prod">ices-tools-prod</a>
<dd>software maintained by the ICES Secretariat
<dt><a href="https://github.com/ices-taf">ices-taf</a>
<dd>TAF assessments
</dl>
<h3>
<a href="r.html" style="color:inherit;text-decoration:inherit">R packages</a>
</h3>
<p><em>Web services:</em>
<dl>
<dt>
<a href="https://github.com/ices-tools-prod/icesDatras">icesDatras</a>
(<a href="https://cran.r-project.org/package=icesDatras">CRAN</a>)
<dd>trawl survey database
<dt>
<a href="https://github.com/ices-tools-prod/icesSAG">icesSAG</a>
(<a href="https://cran.r-project.org/package=icesSAG">CRAN</a>)
<dd>stock assessment graphs
<dt>
<a href="https://github.com/ices-tools-prod/icesSD">icesSD</a>
<dd>stock database
<dt>
<a href="https://github.com/ices-tools-prod/icesVocab">icesVocab</a>
(<a href="https://cran.r-project.org/package=icesVocab">CRAN</a>)
<dd>reference codes
</dl>
<p><em>Other:</em>
<dl>
<dt>
<a href="https://github.com/ices-tools-prod/icesAdvice">icesAdvice</a>
(<a href="https://cran.r-project.org/package=icesAdvice">CRAN</a>)
<dd>advisory methods
<dt>
<a href="https://github.com/ices-tools-prod/icesTAF">icesTAF</a>
(<a href="https://cran.r-project.org/package=icesTAF">CRAN</a>)
<dd>support functions
</dl>
<h3>Web interface</h3>
<a href="interface/index.html">Design outline</a> of web user interface
<h2>Presentations</h2>
<h3>2016</h3>
<dl>
<dt>5 August
<dd><a href="pdf/2016-08-05-ices-seminar.pdf">TAF kickoff seminar</a>
(49 slides, with
<a href="https://github.com/ices-taf/demo/tree/master/isaithe2015">
demo</a>)
<dt>18 September
<dd><a href="pdf/2016-09-18-riga-acom-scicom.pdf">Riga ACOM+SCICOM session</a>
(19 slides)
<dt>21 September
<dd><a href="pdf/2016-09-21-riga-open.pdf">Riga open session</a> (23 slides)
<dt>3 November
<dd><a href="https://github.com/ices-tools-dev/webservicesDemo/blob/master/slides/webservices.pdf">
Web services seminar</a> (17 slides, with
<a href="https://github.com/ices-tools-dev/webservicesDemo/tree/master/examples">
demo</a>)
</dl>
<h3>2017</h3>
<dl>
<dt>17 March
<dd><a href="pdf/2017-03-17-dfo-webex.pdf">DFO webex</a>
(21 slides, with
<a href="https://github.com/ices-taf/2015_rjm-347d">demo</a>)
<dt>25 March
<dd><a href="pdf/2017-04-25-sag.pdf">SAG web services</a> (34 slides)
<dt>1 May
<dd><a href="pdf/2017-05-01-wg.pdf">Assessment WGs</a> (4 slides)
<dt>22 May
<dd><a href="pdf/2017-05-22-dig.pdf">DIG seminar</a> (21 slides)
<dt>15 June
<dd><a href="pdf/2017-06-15-dtu.pdf">DTU collaboration</a> (14 slides)
<dt>20 September
<dd><a href="pdf/2017-09-20-taf-flyer.pdf">TAF flyer</a> (1 slide, with <a
href="https://github.com/ices-taf/2015_had-iceg">demo</a>)
<dt>1 November
<dd><a href="pdf/2017-11-01-data-centre.pdf">Data Centre</a> (8 slides, with
<a href="http://taf.ices.local/taf">demo</a>)
<dt>28 November
<dd><a href="pdf/2017-11-28-acom.pdf">ACOM update</a> (18 slides)
</dl>
<h3>2018</h3>
<dl>
<dt>24 January
<dd><a href="pdf/2018-01-24-chairs.pdf">WGCHAIRS meeting</a> (28 slides)
</dl>