diff --git a/Juggluco/iglu.html b/Juggluco/iglu.html index 7802585..45c27d9 100644 --- a/Juggluco/iglu.html +++ b/Juggluco/iglu.html @@ -1,112 +1,99 @@ - + - - - - Iglu - - - -

Iglu

-

Juggluco - let you export continuous glucose monitoring values. Here I describe how - you can use these data to generate a picture of you glucose percentiles - with the R package Iglu.

-

First you have to save - your streaming data. In Juggluco for Android you can select Export from - the left middle menu and press Stream to save it in some file. You need to - save in mg/dL so before you save it you should set mg/dL in Settings. The - resulting graph is also in mg/dL. This file you can then transfer to you - computer.

-

You can also run cmdline - juggluco on you computer. Setting it to receive glucose values via IP/TCP - connection by selecting Mirror in the left middle menu and adding a - connection with you computers' IP and Stream checked. On you computer you - press

-
juggluco -ra
- Set unit to mg/dL: -
juggluco -G
- Make it a receiver and run in the background by pressing: -
juggluco&
-

If the data are - transferred to the computer, you can press

-
juggluco -B filename 
-

to save the stream data - to filename. See https://www.juggluco.nl/Juggluco/cmdline/index.html - for more information about cmdline juggluco.

-

First you have to - install the statistics computing language R and preferentially Rstudio - which are both freely available on the web. The only drawback is that the - installation takes a lot of time.

-

Under ubuntu (which also - runs under Windows 10), you can press

-
apt install R-base r-cran-devtools libcurl4-openssl-dev libssl-dev gfortran
-

Rstudio you get from - here: https://www.rstudio.com/products/rstudio/download/

-

Now you have to install - some packages, which also can take ages and you have to answer questions - or press return in between:

-

install.packages("devtools", dependencies = TRUE)
library("devtools")
install.packages("iglu", dependencies = TRUE )
install.packages("tidyverse", dependencies = TRUE)
-

And say that you use - them:

-
library("tidyverse")
-library(iglu)
-
-

Use for directory the - full name of your current directory, for stream.tsv the file you have your - stream data in and for 3MH0042XDKM the name of the sensor you want to - show.

-
setwd("directory")

streamdata<-read.csv("stream.tsv",header=TRUE,sep='\t');

cgmdata<-data.frame(streamdata$Sensorid,as.POSIXct(streamdata$UnixTime, origin="1970-01-01"),streamdata$mg.dL) -colnames(cgmdata)[1]<-"id" -colnames(cgmdata)[2]<-"time" -colnames(cgmdata)[3]<-"gl" -
unique(cgmdata$id) # to see the sensor id's -agp(dplyr::filter(cgmdata,id=="3MH0042XDKM")) # display one particular sensor
-

If you want the analyze a period that is not restricted to a single - sensor, you can do the following:

-
cgmdata2<-data.frame("Name",as.POSIXct(streamdata$UnixTime, origin="1970-01-01"),streamdata$mg.dL)
-colnames(cgmdata2)[1]<-"id"
-colnames(cgmdata2)[2]<-"time"
-colnames(cgmdata2)[3]<-"gl"
+
+

+Iglu

+

Juggluco +let you export continuous glucose monitoring values. Here I describe +how you can use these data to generate a picture of you glucose +percentiles with the R +package Iglu.

+

First you have to +save your streaming data. In Juggluco for Android you can select +Export from the left middle menu and press Stream to save it in some +file. You need to save in mg/dL so before you save it you should set +mg/dL in Settings. The resulting graph is also in mg/dL. This file +you can then transfer to your computer.

+

You can also run +Juggluco +server on you computer.

+

Set unit to mg/dL: +

+
juggluco -G

+If the data are transferred to the computer, you can press +

+
juggluco -B filename 

+to save the stream data to filename. See +https://www.juggluco.nl/Juggluco/cmdline/index.html +for more information about cmdline juggluco.

+

First you have to +install the statistics computing language R and preferentially +Rstudio which are both freely available on the web. The only drawback +is that the installation takes a lot of time. +

+

Under ubuntu +(which also runs under Windows 10), you can press

+
apt install R-base r-cran-devtools libcurl4-openssl-dev libssl-dev gfortran

+Rstudio you get from here: +https://www.rstudio.com/products/rstudio/download/

+

Now you have to +install some packages, which also can take ages and you have to +answer questions or press return in between: +

+
install.packages("devtools", dependencies = TRUE)
+library("devtools")
+install.packages("iglu", dependencies = TRUE )
+install.packages("tidyverse", dependencies = TRUE)

+And say that you use them:

+
library("tidyverse")
+library(iglu)

+Use for directory the full name of your current directory, for +stream.tsv the file you have your stream data in and for 3MH0042XDKM +the name of the sensor you want to show.

+
setwd("directory")
+streamdata<-read.csv("stream.tsv",header=TRUE,sep='\t');
+cgmdata<-data.frame(streamdata$Sensorid,as.POSIXct(streamdata$UnixTime, origin="1970-01-01"),streamdata$mg.dL) 
+colnames(cgmdata)[1]<-"id"
+colnames(cgmdata)[2]<-"time"
+colnames(cgmdata)[3]<-"gl"
+unique(cgmdata$id)              # to see the sensor id's
+agp(dplyr::filter(cgmdata,id=="3MH0042XDKM"))       # display one particular sensor

+If you want the analyze a period that is not restricted to a single +sensor, you can do the following:

+
cgmdata2<-data.frame("Name",as.POSIXct(streamdata$UnixTime, origin="1970-01-01"),streamdata$mg.dL)
+colnames(cgmdata2)[1]<-"id"
+colnames(cgmdata2)[2]<-"time"
+colnames(cgmdata2)[3]<-"gl"
 
-agp(dplyr::filter(cgmdata2,time>="2021-01-26"&time<"2021-02-26")) 
-
-

Replace 2021-01-26 with the start date and 2021-02-26 with the end date. -

-

Later you can put the - above in file and run it by opening it in rstudio, select everything and - press run. To see the display, press on the plots penal at the right side. - Resize it so everything is visible and save it with export. You can also - cut and past to command line R, but adjusting the size of the image is - then more difficult.

-
AGP -
History - data. Not scanned often enough for full data. Misses a lot of hypo's - also because the history data are less extream as the scans and stream
-
-
AGP -
Bluetooth - stream. 10% hypoglycemia, instead of the 4% shown in the history data
-
- - +agp(dplyr::filter(cgmdata2,time>="2021-01-26"&time<"2021-02-26"))

+Replace 2021-01-26 with the start date and 2021-02-26 with the end +date. +

+

Later you can put +the above in file and run it by opening it in rstudio, select +everything and press run. To see the display, press on the plots +penal at the right side. Resize it so everything is visible and save +it with export. You can also cut and past to command line R, but +adjusting the size of the image is then more difficult.

+

AGP + +History data. Not scanned often enough +for full data. Misses a lot of hypo's also because the history data +are less extream as the scans and stream +AGP + +Bluetooth stream. 10% hypoglycemia, +instead of the 4% shown in the history data +

+ + \ No newline at end of file