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input bam #18

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thelingxichen opened this issue Aug 20, 2018 · 0 comments
Open

input bam #18

thelingxichen opened this issue Aug 20, 2018 · 0 comments

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@thelingxichen
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Hi,

I am new to Iso-Seq analysis, I want to ask which one should I choose to do the alignment at the first stage:

  1. the raw subread data?
  2. the ccs data?
  3. isoforms produced with PacBio Iso-Seq packages?
  4. collapsed isoforms produced by Cupcake-tofu2?
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@thelingxichen