From 34b4fd51a49167245d41d533ea0fb751e11880a1 Mon Sep 17 00:00:00 2001 From: jonnymaserati Date: Sun, 11 Feb 2024 13:44:56 +0100 Subject: [PATCH] Tidied up utils.MinCure and added some specific unit tests. Tried improving performance with Numba but it made it slower, so removed. --- .../test_data/clearance_iscwsa_well_data.json | 11120 +++++++++++++++- tests/test_utils.py | 31 + welleng/utils.py | 179 +- welleng/version.py | 2 +- 4 files changed, 11246 insertions(+), 86 deletions(-) diff --git a/tests/test_data/clearance_iscwsa_well_data.json b/tests/test_data/clearance_iscwsa_well_data.json index 34febd6..3784e22 100644 --- a/tests/test_data/clearance_iscwsa_well_data.json +++ b/tests/test_data/clearance_iscwsa_well_data.json @@ -1 +1,11119 @@ -{"acr": {"Sm": 0.3, "sigmapa": 0.5, "k": 3.5, "reference_h_and_c": 36, "offset_h_and_c": 24}, "wells": {"Reference well": {"MD": [0, 1, 30, 60, 90, 120, 150, 180, 210, 240, 270, 300, 330, 360, 390, 420, 450, 480, 510, 540, 570, 600, 630, 660, 690, 720, 750, 780, 810, 840, 870, 900, 930, 960, 990, 1020, 1050, 1080, 1110, 1140, 1170, 1200, 1230, 1260, 1290, 1320, 1350, 1380, 1410, 1440, 1470, 1500, 1530, 1560, 1590, 1620, 1650, 1680, 1710, 1740, 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1.36518405315515, + 0.792402757740328, + 0.226169275178599, + 0.326911795731327, + 0.895954707270021 + ], + "header": { + "name": "11 - well", + "latitude": 60.0, + "longitude": 0.0098, + "altitude": 0.0, + "survey_date": "2020-12-30", + "b_total": 50000.0, + "dip": 1.2217304763960306, + "convergence": 0.0, + "declination": 0.0, + "vertical_inc_limit": 1.7453292519943296e-06, + "depth_unit": "meters", + "surface_unit": "meters", + "G": 9.80665, + "azi_reference": "grid" + } + } + } +} \ No newline at end of file diff --git a/tests/test_utils.py b/tests/test_utils.py index 70f7021..2c98354 100644 --- a/tests/test_utils.py +++ b/tests/test_utils.py @@ -11,11 +11,41 @@ radius_from_dls, get_toolface, get_arc, + MinCurve ) +import json LAT, LON = (52, 4, 43.1868, "N"), (4, 17, 19.6368, "E") +def test_mincurve(decimals=2): + with open("tests/test_data/clearance_iscwsa_well_data.json") as f: + data = json.load(f) + + for well, survey in data.get('wells').items(): + def _get_start_xyz(survey): + return np.array([ + survey.get('E')[0], + survey.get('N')[0], + survey.get('TVD')[0] + ]) + + mc = MinCurve( + md=survey.get('MD'), + inc=np.radians(survey.get('IncDeg')), + azi=np.radians(survey.get('AziDeg')), + start_xyz=_get_start_xyz(survey) + ) + + assert np.allclose( + np.round(mc.poss, decimals), np.round(np.array([ + survey.get('E'), survey.get('N'), survey.get('TVD') + ]).T, decimals) + ), "Unexpected position." + + pass + + def _generate_random_dms(n: int, ndigits: int = None) -> NDArray: assert n % 2 == 0, "n must be an even int" deg = np.random.randint(0, 180, n) @@ -235,6 +265,7 @@ def test_get_toolface(): def main(): + test_mincurve() test_dms2decimal2dms() pass diff --git a/welleng/utils.py b/welleng/utils.py index 6455ef4..6bfcc9f 100644 --- a/welleng/utils.py +++ b/welleng/utils.py @@ -12,6 +12,10 @@ NUMBA = False +def numbafy(func): + func = njit(func) + + class MinCurve: def __init__( self, @@ -39,6 +43,7 @@ def __init__( severity. """ + assert unit == "meters" or unit == "feet", ( 'Unknown unit, please select "meters" of "feet"' ) @@ -54,98 +59,116 @@ def __init__( # make two slices with a difference or 1 index to enable array # calculations - md_1 = md[:-1] - md_2 = md[1:] - - inc_1 = inc[:-1] - inc_2 = inc[1:] + md_1, md_2 = self._split_arr(np.array(md)) + inc_1, inc_2 = self._split_arr(np.array(inc)) + azi_1, azi_2 = self._split_arr(np.array(azi)) - azi_1 = azi[:-1] - azi_2 = azi[1:] - - # calculate the dogleg - # temp = np.arccos( - # np.cos(inc_2 - inc_1) - # - (np.sin(inc_1) * np.sin(inc_2)) - # * (1 - np.cos(azi_2 - azi_1)) - # ) - - self.dogleg = np.zeros(survey_length) - self.dogleg[1:] = get_dogleg(inc_1, azi_1, inc_2, azi_2) + self.dogleg = self._get_dogleg(survey_length, inc_1, azi_1, inc_2, azi_2) # calculate rf and assume rf is 1 where dogleg is 0 - self.rf = np.ones(survey_length) - idx = np.where(self.dogleg != 0) - self.rf[idx] = 2 / self.dogleg[idx] * np.tan(self.dogleg[idx] / 2) + self.rf = self._get_rf(survey_length, self.dogleg) # calculate the change in md between survey stations - temp = np.array(md_2) - np.array(md_1) - self.delta_md = np.zeros(survey_length) - self.delta_md[1:] = temp + self.delta_md = np.diff(self.md, prepend=0) + + args = ( + self.delta_md, inc_1, azi_1, inc_2, azi_2, self.rf, survey_length + ) # calculate change in y direction (north) - temp = ( - self.delta_md[1:] + self.delta_y = self._get_delta_y(*args) + + # calculate change in x direction (east) + self.delta_x = self._get_delta_x(*args) + + # calculate change in z direction + self.delta_z = self._get_delta_z(*args) + + # calculate the dog leg severity + self.dls = self._get_dls( + self.dogleg, self.delta_md, survey_length, unit + ) + + # cumulate the coordinates and add surface coordinates + self.poss = np.vstack( + np.cumsum( + np.array([self.delta_x, self.delta_y, self.delta_z]).T, axis=0 + ) + self.start_xyz + ) + + @staticmethod + def _get_dogleg(survey_length, inc1, azi1, inc2, azi2): + dogleg = np.zeros(survey_length) + dogleg[1:] = np.arccos( + np.cos(inc2 - inc1) + - (np.sin(inc1) * np.sin(inc2)) + * (1 - np.cos(azi2 - azi1)) + ) + return dogleg + + @staticmethod + def _split_arr(arr): + return (arr[:-1], arr[1:]) + + @staticmethod + def _get_rf(survey_length, dogleg): + rf = np.ones(survey_length) + idx = np.where(dogleg != 0) + rf[idx] = 2 / dogleg[idx] * np.tan(dogleg[idx] / 2) + return rf + + @staticmethod + def _get_delta_y(delta_md, inc_1, azi_1, inc_2, azi_2, rf, survey_length): + delta_y = np.zeros(survey_length) + delta_y[1:] = ( + delta_md[1:] / 2 * ( np.sin(inc_1) * np.cos(azi_1) + np.sin(inc_2) * np.cos(azi_2) ) - * self.rf[1:] + * rf[1:] ) - self.delta_y = np.zeros(survey_length) - self.delta_y[1:] = temp + return delta_y - # calculate change in x direction (east) - temp = ( - self.delta_md[1:] + @staticmethod + def _get_delta_x(delta_md, inc_1, azi_1, inc_2, azi_2, rf, survey_length): + delta_x = np.zeros(survey_length) + delta_x[1:] = ( + delta_md[1:] / 2 * ( np.sin(inc_1) * np.sin(azi_1) + np.sin(inc_2) * np.sin(azi_2) ) - * self.rf[1:] + * rf[1:] ) - self.delta_x = np.zeros(survey_length) - self.delta_x[1:] = temp + return delta_x - # calculate change in z direction - temp = ( - self.delta_md[1:] + @staticmethod + def _get_delta_z(delta_md, inc_1, azi_1, inc_2, azi_2, rf, survey_length): + delta_z = np.zeros(survey_length) + delta_z[1:] = ( + delta_md[1:] / 2 * (np.cos(inc_1) + np.cos(inc_2)) - * self.rf[1:] + * rf[1:] ) - self.delta_z = np.zeros(survey_length) - self.delta_z[1:] = temp - - # calculate the dog leg severity + return delta_z + + @staticmethod + def _get_dls(dogleg, delta_md, survey_length, unit): + dls = np.zeros(survey_length) with np.errstate(divide='ignore', invalid='ignore'): - temp = np.degrees(self.dogleg[1:]) / self.delta_md[1:] - self.dls = np.zeros(survey_length) + temp = np.degrees(dogleg[1:]) / delta_md[1:] mask = np.where(temp != np.nan) - self.dls[1:][mask] = temp[mask] + dls[1:][mask] = temp[mask] if unit == "meters": - self.dls *= 30 + dls *= 30 else: - self.dls *= 100 - - # cumulate the coordinates and add surface coordinates - self.poss = np.vstack( - np.cumsum( - np.array([self.delta_x, self.delta_y, self.delta_z]).T, axis=0 - ) + self.start_xyz - ) - - -def get_dogleg(inc1, azi1, inc2, azi2): - dogleg = np.arccos( - np.cos(inc2 - inc1) - - (np.sin(inc1) * np.sin(inc2)) - * (1 - np.cos(azi2 - azi1)) - ) - return dogleg + dls *= 100 + return dls def get_vec(inc, azi, nev=False, r=1, deg=True): @@ -228,10 +251,6 @@ def _get_angles(vec): return np.stack((inc, azi), axis=1) -if NUMBA: - _get_angles = njit(_get_angles) - - def get_angles( vec: Annotated[NDArray, Literal["N", 3]], nev: bool = False ): @@ -402,7 +421,7 @@ def get_unit_vec(vec): def linear_convert(data, factor): flag = False - if type(data) != list: + if not isinstance(data, list): flag = True data = [data] converted = [d * factor if d is not None else None for d in data] @@ -513,10 +532,6 @@ def _get_arc_pos_and_vec(dogleg, radius): return (pos, vec) -if NUMBA: - _get_arc_pos_and_vec = njit(_get_arc_pos_and_vec) - - class Arc: def __init__(self, dogleg, radius): """ @@ -542,18 +557,6 @@ def __init__(self, dogleg, radius): self.pos, self.vec = _get_arc_pos_and_vec(dogleg, radius) - # self.pos = np.array([ - # np.cos(dogleg), - # 0., - # np.sin(dogleg) - # ]) * radius - # self.pos[0] = radius - self.pos[0] - - # self.vec = np.array([ - # np.sin(dogleg), - # 0., - # np.cos(dogleg) - # ]) def transform(self, toolface, pos=None, vec=None, target=False): """ @@ -895,3 +898,11 @@ def get_toolface(pos1: NDArray, vec1: NDArray, pos2: NDArray) -> float: pos = r.apply(pos2 - pos1) return np.arctan2(*(np.flip(pos[:2]))) + + +if NUMBA: + NUMBA_FUNCS = ( + _get_angles, _get_arc_pos_and_vec + ) + for func in NUMBA_FUNCS: + numbafy(func) diff --git a/welleng/version.py b/welleng/version.py index b4e3540..21320a8 100644 --- a/welleng/version.py +++ b/welleng/version.py @@ -1 +1 @@ -__version__ = '0.8.3' +__version__ = '0.8.4'