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IOError: test-filter/hydra.log/hydra.log.alpha not found. #6

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ghost opened this issue Nov 16, 2020 · 1 comment
Open

IOError: test-filter/hydra.log/hydra.log.alpha not found. #6

ghost opened this issue Nov 16, 2020 · 1 comment

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@ghost
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ghost commented Nov 16, 2020

Hi Jacob

I was trying to run the enrich step but it seems like it is look for a hydra.log.alpha file and there's only the hydra.log file and another ANALYZED file in the test-filter output folder after running filter.

the cmd i ran:

docker run --rm -v $PWD:/data jpfeil/hydra:0.3.3 enrich -e test/train.exp_matrix.tsv -m test-filter --min-prob-filter 0.1 --go-enrichment -o go-enrichment

pls advise. Thank you!

@jpfeil
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jpfeil commented May 30, 2023

Sorry for the very late response, @kengcher! I noticed that the test directory was missing training data. Can you try running it again with the provided training data?

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