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I was trying to run the enrich step but it seems like it is look for a hydra.log.alpha file and there's only the hydra.log file and another ANALYZED file in the test-filter output folder after running filter.
Sorry for the very late response, @kengcher! I noticed that the test directory was missing training data. Can you try running it again with the provided training data?
Hi Jacob
I was trying to run the enrich step but it seems like it is look for a hydra.log.alpha file and there's only the hydra.log file and another ANALYZED file in the test-filter output folder after running filter.
the cmd i ran:
docker run --rm -v $PWD:/data jpfeil/hydra:0.3.3 enrich -e test/train.exp_matrix.tsv -m test-filter --min-prob-filter 0.1 --go-enrichment -o go-enrichment
pls advise. Thank you!
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