Development version 0.3.5

Fixes to HDTuning
Adjustments to GridScore to catch exceptions and return NaNs

Development version 0.3.4

Default peak_search behaviour changed to use default instead of sep

Raise an Error (not a warning) if sep is not installed. Recall that as of 0.3.3, sep will not be installed by default: the user must specify pip install opexebo[full]

Development version 0.3.3

• sep is now an optional dependency instead of required
• To install, you must call pip install opexebo[full] to get any optional dependencies
• If the user attempts to use the peak_search_sep but the module is not installed the user will be WARNED, but no errors will be thrown. The code will then fail-over to the alternative routine (which uses skimage instead)

Development version 0.3.2

Minor fixes to the tuning_curve function. Where the bin_width is not an exact divisor of 360°, angular_occupancy and tuning_curve would yield different bin numbers due to inconsistent calculation. Calculation has been standardised to

bin_number = int(np.ceil(360/bin_width))

In the case of non-exact divisors, this will result in smaller bin sizes than requested.

Development version 0.3.1

Changes:
** Fixed the fix for NaNs in placefield detection. (fixes #13 , again, should solve #5 )
** Verfication of some scores against Horst's Postgres server

MVL

Grid score

Ratemap stats

Development version 0.3.0

Changes

• Angular occupancy fixed to generate rates in events per second, instead of per frame
• Angular and Spatial Occupancy function method signatures changed
• Matplotlib removed from requirements (fixes #14)
• Placefield detection has additional NaN detection (fixes #13 , #12 )

Development version 2.2

Documentation updates
Minor change to tuning_curve_stats to more robust circular shifting (previous implementation ran into issues when shifting from the first or last index)

Development version 2.1

• Bugfixes to most standard functions
• Substantive changes to analysis.angular_occupancy() and general.accumulate_spatial() to handle 1D arrays
• Initial work on Sphinx documentation

Development version 2

Version 0.2.0

New functions

• Added Spatial Occupancy, RateMap, RateMapStats+Coherence
• Added GridScoreStats
• Added Angular Occupancy, TuningCurve, TuningCurveStats
• Added Smoothing, EllipseFit
• Added Defaults, a single location for default values
• (Experimental only) Added BorderScore, SpeedScore
• (Experimental only) Added Shuffling

Changed functions:

• Consistent styling: files are labelled in CamelCapsStyle
• All functions are named_in_underscore_style
• Original functions (Autocorrelation, GridScore, PlaceField) all accept Masked Arrays
• General goal is to use maskedArrays rather than NaNs to indicate invalid values.