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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(align_graph)
export(align_topics)
export(compute_number_of_paths)
export(compute_strain_switching_scores_of_model)
export(plot_alignment)
export(plot_beta)
export(plot_number_of_paths)
export(product_weights)
export(run_lda_models)
export(setup_edges)
export(transport_weights)
exportClasses(alignment)
exportMethods(models)
exportMethods(n_models)
exportMethods(n_topics)
exportMethods(plot)
exportMethods(show)
exportMethods(topics)
exportMethods(weights)
import(methods)
importFrom(T4transport,sinkhornD)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,last)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,slice_head)
importFrom(dplyr,slice_max)
importFrom(dplyr,slice_min)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,tibble)
importFrom(dplyr,ungroup)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_alpha)
importFrom(ggplot2,scale_color_discrete)
importFrom(ggplot2,scale_color_identity)
importFrom(ggplot2,scale_fill_discrete)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_fill_identity)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(grid,unit)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(philentropy,JSD)
importFrom(purrr,imap_dfr)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_dfr)
importFrom(purrr,map_int)
importFrom(scales,hue_pal)
importFrom(stringr,str_c)
importFrom(stringr,str_length)
importFrom(stringr,str_replace)
importFrom(stringr,str_starts)
importFrom(tibble,as_tibble)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(topicmodels,LDA)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,modifyList)
importFrom(utils,tail)