1.0

Conform SDS-PE COVID-19 data to SIDARTHE model

In the current state, the project transforms data manually collected from SDS PE (in portuguese: Secretaria De Saúde de Pernambuco), under the Base Sintática tab, to the input format expected by the SIDARTHE Covid-19 model. As an output of the data transformation, two files are created under data/out:

• sdspe.csv: CSV with transformed data, in the expected SIDARTHE format.

• sidarthe.txt: TXT with transformed data, in the expected SIDARTHE Matlab program format.

The project also contains original and modified Matlab simulations that model several scenarios of COVID-19 evolution, with the transfomed data.

To use more recent data, make sure it is collected as stated above and then overwrite the data/in/sdspe.csv with the new data. Then, run the project (instructions in the README) and copy over the contents from data/out/sidarthe.txt to update the variable values in matlab/Sidarthe_Simulation_Pernambuco.m. At last, run the simulation in Matlab.