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readviz_inputs.json.bak
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readviz_inputs.json.bak
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{
"MultiChromReadVizWorkflow.ref_fasta": "/mnt/ceph/users/sfida/DB/reference_genomes/GRCh38/GRCh38_full_analysis_set_plus_decoy_hla.fa",
"MultiChromReadVizWorkflow.ref_fasta_fai": "/mnt/ceph/users/sfida/DB/reference_genomes/GRCh38/GRCh38_full_analysis_set_plus_decoy_hla.fa.fai",
"MultiChromReadVizWorkflow.ref_fasta_dict": "/mnt/ceph/users/sfida/DB/reference_genomes/GRCh38/GRCh38_full_analysis_set_plus_decoy_hla.dict",
"MultiChromReadVizWorkflow.sample_input_files": [
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr1_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr2_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr3_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr4_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr5_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr6_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr7_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr8_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr9_tsv_bams.tsv",
"/mnt/home/mlek/mlek/readviz/SPARK_WGS/spark_chr10_tsv_bams.tsv"],
"MultiChromReadVizWorkflow.chr_list": ["1","2","3","4","5","6","7","8","9","10"],
"MultiChromReadVizWorkflow.gatk": "/mnt/home/sw/bioinfoCentos7/installs/GATK/4.2.1.0/gatk-4.2.1.0/gatk",
"MultiChromReadVizWorkflow.samtools": "/mnt/ceph/users/info/software/samtools_rocky8/samtools-1.16.1/samtools",
"MultiChromReadVizWorkflow.sqlite3": "/mnt/home/mlek/mlek/sqlite-tools-linux-x86-3360000/sqlite3",
"MultiChromReadVizWorkflow.python_script4": "/mnt/home/mlek/mlek/sfari-readviz/scripts/deidentify_bamout.py"
}