diff --git a/README.md b/README.md index 3b91387..c42dbc4 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,16 @@ # CLDF Dataset derived from the Bahnaric data in Sidwell's "Austroasiatic dataset for phylogenetic analysis" from 2015 -Cite the source dataset as +[![CLDF validation](https://github.com/lexibank/sidwellbahnaric/workflows/CLDF-validation/badge.svg)](https://github.com/lexibank/sidwellbahnaric/actions?query=workflow%3ACLDF-validation) + +## How to cite + +If you use these data please cite +- the original source + > Sidwell, Paul. 2015. Austroasiatic dataset for phylogenetic analysis: 2015 version. Mon-Khmer Studies (Notes, Reviews, Data-Papers) 44. lxviii-ccclvii. +- the derived dataset using the DOI of the [particular released version](../../releases/) you were using + +## Description -> Sidwell, Paul. 2015. Austroasiatic dataset for phylogenetic analysis: 2015 version. Mon-Khmer Studies (Notes, Reviews, Data-Papers) 44. lxviii-ccclvii. This dataset is licensed under a CC-By-4.0 license @@ -24,6 +32,7 @@ This dataset by Sidwell (2015) was used as a gold standard benchmark in the stud ## Statistics +[![CLDF validation](https://github.com/lexibank/sidwellbahnaric/workflows/CLDF-validation/badge.svg)](https://github.com/lexibank/sidwellbahnaric/actions?query=workflow%3ACLDF-validation) ![Glottolog: 100%](https://img.shields.io/badge/Glottolog-100%25-brightgreen.svg "Glottolog: 100%") ![Concepticon: 100%](https://img.shields.io/badge/Concepticon-100%25-brightgreen.svg "Concepticon: 100%") ![Source: 100%](https://img.shields.io/badge/Source-100%25-brightgreen.svg "Source: 100%") @@ -50,3 +59,10 @@ Johann-Mattis List | @LinguList | maintainer | Other Paul Sidwell | | data collection | Author + + +## CLDF Datasets + +The following CLDF datasets are available in [cldf](cldf): + +- CLDF [Wordlist](https://github.com/cldf/cldf/tree/master/modules/Wordlist) at [cldf/cldf-metadata.json](cldf/cldf-metadata.json) \ No newline at end of file diff --git a/cldf/README.md b/cldf/README.md new file mode 100644 index 0000000..51ae1ed --- /dev/null +++ b/cldf/README.md @@ -0,0 +1,119 @@ + + +# Wordlist CLDF Dataset derived from the Bahnaric data in Sidwell's "Austroasiatic dataset for phylogenetic analysis" from 2015 + +**CLDF Metadata**: [cldf-metadata.json](./cldf-metadata.json) + +**Sources**: [sources.bib](./sources.bib) + +property | value + --- | --- +[dc:bibliographicCitation](http://purl.org/dc/terms/bibliographicCitation) | Sidwell, Paul. 2015. Austroasiatic dataset for phylogenetic analysis: 2015 version. Mon-Khmer Studies (Notes, Reviews, Data-Papers) 44. lxviii-ccclvii. +[dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF Wordlist](http://cldf.clld.org/v1.0/terms.rdf#Wordlist) +[dc:format](http://purl.org/dc/terms/format) |
  1. http://concepticon.clld.org/contributions/Sidwell-2015-200
+[dc:license](http://purl.org/dc/terms/license) | https://creativecommons.org/licenses/by/4.0/ +[dcat:accessURL](http://www.w3.org/ns/dcat#accessURL) | https://github.com/lexibank/sidwellbahnaric +[prov:wasDerivedFrom](http://www.w3.org/ns/prov#wasDerivedFrom) |
  1. lexibank/sidwellbahnaric dbc3d27
  2. Glottolog v4.4
  3. Concepticon v2.5.0
  4. CLTS v2.1.0
+[prov:wasGeneratedBy](http://www.w3.org/ns/prov#wasGeneratedBy) |
  1. lingpy-rcParams: lingpy-rcParams.json
  2. python: 3.8.10
  3. python-packages: requirements.txt
+[rdf:ID](http://www.w3.org/1999/02/22-rdf-syntax-ns#ID) | sidwellbahnaric +[rdf:type](http://www.w3.org/1999/02/22-rdf-syntax-ns#type) | http://www.w3.org/ns/dcat#Distribution + + +## Table [forms.csv](./forms.csv) + + +Raw lexical data item as it can be pulled out of the original datasets. + +This is the basis for creating rows in CLDF representations of the data by +- splitting the lexical item into forms +- cleaning the forms +- potentially tokenizing the form + + +property | value + --- | --- +[dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF FormTable](http://cldf.clld.org/v1.0/terms.rdf#FormTable) +[dc:extent](http://purl.org/dc/terms/extent) | 4546 + + +### Columns + +Name/Property | Datatype | Description + --- | --- | --- +[ID](http://cldf.clld.org/v1.0/terms.rdf#id) | `string` | Primary key +[Local_ID](http://purl.org/dc/terms/identifier) | `string` | +[Language_ID](http://cldf.clld.org/v1.0/terms.rdf#languageReference) | `string` | References [languages.csv::ID](#table-languagescsv) +[Parameter_ID](http://cldf.clld.org/v1.0/terms.rdf#parameterReference) | `string` | References [parameters.csv::ID](#table-parameterscsv) +[Value](http://cldf.clld.org/v1.0/terms.rdf#value) | `string` | +[Form](http://cldf.clld.org/v1.0/terms.rdf#form) | `string` | +[Segments](http://cldf.clld.org/v1.0/terms.rdf#segments) | list of `string` (separated by ` `) | +[Comment](http://cldf.clld.org/v1.0/terms.rdf#comment) | `string` | +[Source](http://cldf.clld.org/v1.0/terms.rdf#source) | list of `string` (separated by `;`) | References [sources.bib::BibTeX-key](./sources.bib) +`Cognacy` | `string` | +`Loan` | `boolean` | +`Graphemes` | `string` | +`Profile` | `string` | + +## Table [languages.csv](./languages.csv) + +property | value + --- | --- +[dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF LanguageTable](http://cldf.clld.org/v1.0/terms.rdf#LanguageTable) +[dc:extent](http://purl.org/dc/terms/extent) | 24 + + +### Columns + +Name/Property | Datatype | Description + --- | --- | --- +[ID](http://cldf.clld.org/v1.0/terms.rdf#id) | `string` | Primary key +[Name](http://cldf.clld.org/v1.0/terms.rdf#name) | `string` | +[Glottocode](http://cldf.clld.org/v1.0/terms.rdf#glottocode) | `string` | +`Glottolog_Name` | `string` | +[ISO639P3code](http://cldf.clld.org/v1.0/terms.rdf#iso639P3code) | `string` | +[Macroarea](http://cldf.clld.org/v1.0/terms.rdf#macroarea) | `string` | +[Latitude](http://cldf.clld.org/v1.0/terms.rdf#latitude) | `decimal` | +[Longitude](http://cldf.clld.org/v1.0/terms.rdf#longitude) | `decimal` | +`Family` | `string` | + +## Table [parameters.csv](./parameters.csv) + +property | value + --- | --- +[dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF ParameterTable](http://cldf.clld.org/v1.0/terms.rdf#ParameterTable) +[dc:extent](http://purl.org/dc/terms/extent) | 200 + + +### Columns + +Name/Property | Datatype | Description + --- | --- | --- +[ID](http://cldf.clld.org/v1.0/terms.rdf#id) | `string` | Primary key +[Name](http://cldf.clld.org/v1.0/terms.rdf#name) | `string` | +[Concepticon_ID](http://cldf.clld.org/v1.0/terms.rdf#concepticonReference) | `string` | +`Concepticon_Gloss` | `string` | +`Number` | `string` | + +## Table [cognates.csv](./cognates.csv) + +property | value + --- | --- +[dc:conformsTo](http://purl.org/dc/terms/conformsTo) | [CLDF CognateTable](http://cldf.clld.org/v1.0/terms.rdf#CognateTable) +[dc:extent](http://purl.org/dc/terms/extent) | 4546 + + +### Columns + +Name/Property | Datatype | Description + --- | --- | --- +[ID](http://cldf.clld.org/v1.0/terms.rdf#id) | `string` | Primary key +[Form_ID](http://cldf.clld.org/v1.0/terms.rdf#formReference) | `string` | References [forms.csv::ID](#table-formscsv) +[Form](http://linguistics-ontology.org/gold/2010/FormUnit) | `string` | +[Cognateset_ID](http://cldf.clld.org/v1.0/terms.rdf#cognatesetReference) | `string` | +`Doubt` | `boolean` | +`Cognate_Detection_Method` | `string` | +[Source](http://cldf.clld.org/v1.0/terms.rdf#source) | list of `string` (separated by `;`) | References [sources.bib::BibTeX-key](./sources.bib) +[Alignment](http://cldf.clld.org/v1.0/terms.rdf#alignment) | list of `string` (separated by ` `) | +`Alignment_Method` | `string` | +`Alignment_Source` | `string` | + diff --git a/cldf/cldf-metadata.json b/cldf/cldf-metadata.json index 8e09c1d..0443ab3 100644 --- a/cldf/cldf-metadata.json +++ b/cldf/cldf-metadata.json @@ -14,34 +14,38 @@ "dcat:accessURL": "https://github.com/lexibank/sidwellbahnaric", "prov:wasDerivedFrom": [ { - "rdf:type": "prov:Entity", - "dc:title": "Repository", "rdf:about": "https://github.com/lexibank/sidwellbahnaric", - "dc:created": "70a6514" + "rdf:type": "prov:Entity", + "dc:created": "dbc3d27", + "dc:title": "Repository" }, { - "rdf:type": "prov:Entity", - "dc:title": "Glottolog", "rdf:about": "https://github.com/glottolog/glottolog", - "dc:created": "v4.3" + "rdf:type": "prov:Entity", + "dc:created": "v4.4", + "dc:title": "Glottolog" }, { - "rdf:type": "prov:Entity", - "dc:title": "Concepticon", "rdf:about": "https://github.com/concepticon/concepticon-data", - "dc:created": "v2.4.0" + "rdf:type": "prov:Entity", + "dc:created": "v2.5.0", + "dc:title": "Concepticon" }, { + "rdf:about": "https://github.com/cldf-clts/clts", "rdf:type": "prov:Entity", - "dc:title": "CLTS", - "rdf:about": "https://github.com/cldf-clts/clts/", - "dc:created": "v2.0.0" + "dc:created": "v2.1.0", + "dc:title": "CLTS" } ], "prov:wasGeneratedBy": [ + { + "dc:title": "lingpy-rcParams", + "dc:relation": "lingpy-rcParams.json" + }, { "dc:title": "python", - "dc:description": "3.9.4" + "dc:description": "3.8.10" }, { "dc:title": "python-packages", @@ -56,6 +60,7 @@ "tables": [ { "dc:conformsTo": "http://cldf.clld.org/v1.0/terms.rdf#FormTable", + "dc:description": "\nRaw lexical data item as it can be pulled out of the original datasets.\n\nThis is the basis for creating rows in CLDF representations of the data by\n- splitting the lexical item into forms\n- cleaning the forms\n- potentially tokenizing the form\n", "dc:extent": 4546, "tableSchema": { "columns": [ @@ -195,8 +200,8 @@ { "datatype": { "base": "decimal", - "minimum": -90, - "maximum": 90 + "minimum": "-90", + "maximum": "90" }, "propertyUrl": "http://cldf.clld.org/v1.0/terms.rdf#latitude", "required": false, @@ -205,8 +210,8 @@ { "datatype": { "base": "decimal", - "minimum": -180, - "maximum": 180 + "minimum": "-180", + "maximum": "180" }, "propertyUrl": "http://cldf.clld.org/v1.0/terms.rdf#longitude", "required": false, diff --git a/cldf/languages.csv b/cldf/languages.csv index a55fd3c..607bdc7 100644 --- a/cldf/languages.csv +++ b/cldf/languages.csv @@ -1,7 +1,7 @@ ID,Name,Glottocode,Glottolog_Name,ISO639P3code,Macroarea,Latitude,Longitude,Family bahnarpleiku,BahnarPleiku,bahn1262,Bahnar,bdq,Eurasia,14.0476,108.471,Austroasiatic bahnarkontum,BahnarKontum,bahn1262,Bahnar,bdq,Eurasia,14.0476,108.471,Austroasiatic -rengao,Rengao,reng1252,Rengao,ren,Eurasia,14.6066,107.859,Austroasiatic +rengao,Rengao,reng1252,Rengao,ren,Eurasia,14.456,107.9459,Austroasiatic mel,Mel,cent1992,Central Mnong,cmo,Eurasia,12.6313,107.301,Austroasiatic stieng,Stieng,bulo1242,Bulo Stieng,sti,Eurasia,11.9777,106.798,Austroasiatic brao,Brao,lave1249,Brao,brb,Eurasia,14.5994,107.008,Austroasiatic diff --git a/cldf/lingpy-rcParams.json b/cldf/lingpy-rcParams.json new file mode 100644 index 0000000..971ac28 --- /dev/null +++ b/cldf/lingpy-rcParams.json @@ -0,0 +1,133 @@ +{ + "_color": "Model: color\nInfo: Model for colored sound class output based on Dolgopolsky (1986)\nSource: Dolgopolsky (1986)\nCompiler: Johann-Mattis List\nDate: 2012-03", + "align_classes": true, + "align_factor": 0.3, + "align_gap_weight": 0.5, + "align_gop": -2, + "align_mode": "global", + "align_modes": [ + [ + "global", + -2, + 0.5 + ], + [ + "local", + -1, + 0.5 + ] + ], + "align_notransform": { + "A": 1, + "B": 1, + "C": 1, + "L": 1, + "M": 1, + "N": 1, + "T": 1, + "X": 1, + "Y": 1, + "Z": 1, + "_": 1 + }, + "align_scale": 0.5, + "align_scorer": {}, + "align_sonar": true, + "align_stamp": "# MSA\n# dataset : {0}\n# collection : {1}\n# aligned by : LingPy Version {2} \n# created on : {3}\n# parameters : {4}\n", + "align_transform": { + "A": 1.6, + "B": 1.3, + "C": 1.2, + "L": 1.1, + "M": 1.1, + "N": 0.5, + "T": 1.0, + "X": 3.0, + "Y": 3.0, + "Z": 0.7, + "_": 0.0 + }, + "align_tree_calc": "neighbor", + "art": "Model: art\nInfo: Specific sound-class model for the creation of prosodic strings.\nSource: List (2012)\nCompiler: Johann-Mattis List\nDate: 2012", + "asjp": "Model: asjp\nInfo: Sound-Class model following Brown et al. (2008) and Brown et al. (2011)\nSource: Brown et al (2008), Brown et al. (2011)\nCompiler: Johann-Mattis List\nDate: 2011", + "basic_orthography": "fuzzy", + "breaks": ".-", + "classes": true, + "cmodules": false, + "combiners": "\u0361\u035c", + "comment": "#", + "cv": "Model: cv\nInfo: Specific sound-class model for the creation of consonant vowel templates.\nSource: None\nCompiler: Johann-Mattis List\nDate: 2015", + "diacritics": "!:|\u00af\u02b0\u02b1\u02b2\u02b3\u02b4\u02b5\u02b6\u02b7\u02b8\u02b9\u02ba\u02bb\u02bc\u02bd\u02be\u02bf\u02c0\u02c0 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+ "dolgo": "Model: dolgo\nInfo: Sound-Class model based on Dolgopolsky (1986)\nSource: Dolgopolsky (1986)\nCompiler: Johann-Mattis List\nDate: 2012-03", + "factor": 0.3, + "figsize": [ + 10, + 10 + ], + "filename": "lingpy-2021-07-26", + "gap_symbol": "-", + "gap_weight": 0.5, + "gop": -2, + "internal_morpheme_separator": "_", + "jaeger": "Model: jaeger\nInfo: Sound-Class model based on PMI scores calculated for ASJP data.\nSource: Jaeger (2015)\nCompiler: unknown\nDate: 2016-03-29", + "lexstat_bad_chars_limit": 0.1, + "lexstat_cluster_method": "upgma", + "lexstat_limit": 10000, + "lexstat_modes": [ + [ + "global", + -2, + 0.5 + ], + [ + "local", + -1, + 0.5 + ] + ], + "lexstat_preprocessing_method": "sca", + "lexstat_preprocessing_threshold": 0.7, + "lexstat_rands": 1000, + "lexstat_ratio": [ + 2, + 1 + ], + "lexstat_runs": 1000, + "lexstat_scoring_method": "shuffle", + "lexstat_scoring_threshold": 0.7, + "lexstat_threshold": 0.45, + "lexstat_transform": { + "A": "C", + "B": "C", + "C": "C", + "L": "c", + "M": "c", + "N": "c", + "T": "T", + "X": "V", + "Y": "V", + "Z": "V", + "_": "_" + }, + "lexstat_vscale": 1.0, + "merge_vowels": true, + "model": "Model: sca\nInfo: Extended sound class model based on Dolgopolsky (1986)\nSource: List (2012)\nCompiler: Johann-Mattis List\nDate: 2012-03", + "morpheme_separator": "+", + "morpheme_separators": "\u25e6+\u2192\u2190", + "nasal_placeholder": "\u223c", + "ref": "cogid", + "restricted_chars": "_T", + "sca": "Model: sca\nInfo: Extended sound class model based on Dolgopolsky (1986)\nSource: List (2012)\nCompiler: Johann-Mattis List\nDate: 2012-03", + "scale": 0.5, + "schema": "qlc", + "scorer": {}, + "sonar": true, + "stress": "\u02c8\u02cc'", + "timestamp": "2021-07-26 10:40", + "tones": "\u00b9\u00b2\u00b3\u2074\u2075\u2076\u2077\u2078\u2079\u2070\u2081\u2082\u2083\u2084\u2085\u2086\u2087\u2088\u2089\u20800123456789\u02e5\u02e6\u02e7\u02e8\u02e9\u02ea\u02eb-\ua708-\ua709-\ua70a-\ua70b-\ua70c-\ua70d-\ua70e-\ua70f-\ua710-\ua711-\ua712-\ua713-\ua714-\ua715-\ua716-\ua717-\ua718-\ua719-\ua71a-\ua700-\ua701-\ua702-\ua703-\ua704-\ua705-\ua706-\ua707", + "tree_calc": "neighbor", + "unique_sequences": true, + "vowels": "\u1e4d\u02af\u03b5aeiouy\u00e1\u00e3\u00e6\u00ed\u00f5\u00f8\u00fa\u0129\u0131\u0153\u0169\u016b\u01d2\u01dd\u0207\u0217\u0250\u0251\u0252\u0254\u0258\u0259\u025a\u025b\u025c\u025e\u0264\u0268\u026a\u026f\u0275\u0276\u0277\u027f\u0285\u0289\u028a\u028c\u028f\u1d00\u1d07\u1d1c\u1ebd\u1ef9\u1e73", + "word_separator": "_", + "word_separators": "_#" +} \ No newline at end of file diff --git a/cldf/parameters.csv b/cldf/parameters.csv index cba3012..540a298 100644 --- a/cldf/parameters.csv +++ b/cldf/parameters.csv @@ -159,7 +159,7 @@ ID,Name,Concepticon_ID,Concepticon_Gloss,Number 158_tohear,to hear,1408,HEAR,158 159_tohideconcealtr,to hide/conceal (tr.),602,HIDE (CONCEAL),159 160_tohunt,to hunt,1435,HUNT,160 -161_toitchtobeitchy,to itch/to be itchy,149,ITCHY,161 +161_toitchtobeitchy,to itch/to be itchy,3855,ITCH (CAUSE ITCHING OR FEEL ITCHY),161 162_tokick,to kick,1135,KICK,162 163_tokill,to kill,1417,KILL,163 164_toknow,to know,3626,KNOW,164 diff --git a/cldf/requirements.txt b/cldf/requirements.txt index 2a91aef..3f1317f 100644 --- a/cldf/requirements.txt +++ b/cldf/requirements.txt @@ -1,49 +1,47 @@ appdirs==1.4.4 bs4==0.0.1 -certifi==2020.12.5 -chardet==4.0.0 -cldfbench==1.5.0 -cldfcatalog==1.3.0 -clldutils==3.7.0 -colorlog==4.8.0 -csvw==1.10.1 +certifi==2021.5.30 +cldfbench==1.7.1 +cldfcatalog==1.3.2 +clldutils==3.9.0 +colorlog==5.0.1 +csvw==1.11.0 decorator==4.4.2 -gitdb==4.0.5 -greenlet==1.0.0 -idna==2.10 +gitdb==4.0.7 +greenlet==1.1.0 +idna==3.2 iniconfig==1.1.1 isodate==0.6.0 -lingpy==2.6.7 -lxml==4.6.3 +lingpy==2.6.8 Markdown==3.3.4 -networkx==2.5 -newick==1.0.0 -numpy==1.20.1 +networkx==2.5.1 +newick==1.3.0 +numpy==1.21.1 openpyxl==3.0.7 +packaging==21.0 pluggy==0.13.1 -purl==1.5 +purl==1.6 py==1.10.0 pybtex==0.24.0 -pycldf==1.21.0 -pyclts==3.0.2 -pyconcepticon==2.7.0 +pycldf==1.22.0 +pyclts==3.1.1 +pyconcepticon==2.8.0 pycountry==20.7.3 -pyglottolog==3.3.0 --e git+https://github.com/lexibank/pylexibank.git@d9b234625b868cc82b70461f144ba5e3cb9f04e2#egg=pylexibank -pytest==6.2.2 -regex==2021.3.17 -requests==2.25.1 -rfc3986==1.4.0 +pyglottolog==3.6.0 +pylexibank==3.2.0 +pytest==6.2.4 +regex==2021.7.6 +requests==2.26.0 +rfc3986==1.5.0 segments==2.2.0 -six==1.15.0 -smmap==3.0.5 +six==1.16.0 +smmap==4.0.0 soupsieve==2.2.1 -SQLAlchemy==1.4.2 +SQLAlchemy==1.4.22 tabulate==0.8.9 termcolor==1.1.0 -tqdm==4.59.0 +tqdm==4.61.2 uritemplate==3.0.1 -urllib3==1.26.4 -wcwidth==0.2.5 +urllib3==1.26.6 xlrd==2.0.1 -zenodoclient==0.3.0 \ No newline at end of file +zenodoclient==0.4.1 \ No newline at end of file