.travis.yml

language: python


matrix:
  include:
    - name: "ubuntu xenial"
      os: linux  
      dist: xenial
    - name: "ubuntu bionic"
      os: linux
      dist: bionic

python:
  - "3.6"

before_install:
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
  - chmod +x miniconda.sh							 
  - ./miniconda.sh -b
  - export PATH=$HOME/miniconda3/bin:$PATH
  - conda update --yes conda
  - conda config --add channels defaults
  - conda config --add channels conda-forge
  - conda config --add channels bioconda
  
install:
  - conda install --yes python=$TRAVIS_PYTHON_VERSION taxonkit
  - conda list

script:
  - python gtdb_to_taxdump.py tests/data/gtdb_r89.0/ar122_taxonomy_r89.tsv tests/data/gtdb_r89.0/bac120_taxonomy_r89_n10k.tsv | head -n 100
  - python gtdb_to_taxdump.py https://data.ace.uq.edu.au/public/gtdb/data/releases/release89/89.0/ar122_taxonomy_r89.tsv | head -n 100
  - taxonkit list --data-dir . --ids 1,10,24 | head -n 100
  - taxonkit lineage --data-dir . tests/data/taxonkit/taxIDs.txt | head -n 100