m1 macos installation problem

[yy945635407]

Hi, I am using an m1 macbook, and when I try to install openl3, I encounter the problem when the script tries to install h5py, but I have installed h5py in my virtual environment.
The problem is as below:
building 'h5py.defs' extension
creating build/temp.macosx-11.0-arm64-3.8
creating build/temp.macosx-11.0-arm64-3.8/private
creating build/temp.macosx-11.0-arm64-3.8/private/var
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308
creating build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include -arch arm64 -fPIC -O2 -isystem /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include -arch arm64 -DH5_USE_16_API -I./h5py -I/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/lzf -I/opt/local/include -I/usr/local/include -I/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include -I/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/python3.8 -c /private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c -o build/temp.macosx-11.0-arm64-3.8/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.o
In file included from /private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:731:
In file included from ./h5py/api_compat.h:26:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16556:56: error: too few arguments to function call, expected 3, have 2
__pyx_t_1 = H5Oget_info(__pyx_v_loc_id, __pyx_v_oinfo); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1509, __pyx_L1_error)
~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:497:15: note: 'H5Oget_info3' declared here
H5_DLL herr_t H5Oget_info3(hid_t loc_id, H5O_info2_t *oinfo, unsigned fields);
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16671:95: error: too few arguments to function call, expected 5, have 4
__pyx_t_1 = H5Oget_info_by_name(__pyx_v_loc_id, __pyx_v_name, __pyx_v_oinfo, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1520, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:557:15: note: 'H5Oget_info_by_name3' declared here
H5_DLL herr_t H5Oget_info_by_name3(hid_t loc_id, const char *name, H5O_info2_t *oinfo, unsigned fields,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:16786:144: error: too few arguments to function call, expected 8, have 7
__pyx_t_1 = H5Oget_info_by_idx(__pyx_v_loc_id, __pyx_v_group_name, __pyx_v_idx_type, __pyx_v_order, __pyx_v_n, __pyx_v_oinfo, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1531, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:631:15: note: 'H5Oget_info_by_idx3' declared here
H5_DLL herr_t H5Oget_info_by_idx3(hid_t loc_id, const char *group_name, H5_index_t idx_type,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:17821:100: error: too few arguments to function call, expected 6, have 5
__pyx_t_1 = H5Ovisit(__pyx_v_obj_id, __pyx_v_idx_type, __pyx_v_order, __pyx_v_op, __pyx_v_op_data); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1630, __pyx_L1_error)
~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:1326:15: note: 'H5Ovisit3' declared here
H5_DLL herr_t H5Ovisit3(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate2_t op,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:17936:143: error: too few arguments to function call, expected 8, have 7
__pyx_t_1 = H5Ovisit_by_name(__pyx_v_loc_id, __pyx_v_obj_name, __pyx_v_idx_type, __pyx_v_order, __pyx_v_op, __pyx_v_op_data, __pyx_v_lapl_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 1641, __pyx_L1_error)
~~~~~~~~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Opublic.h:1492:15: note: 'H5Ovisit_by_name3' declared here
H5_DLL herr_t H5Ovisit_by_name3(hid_t loc_id, const char *obj_name, H5_index_t idx_type,
^
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:21846:13: warning: assigning to 'void *' from 'const void *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
__pyx_t_1 = H5Pget_driver_info(__pyx_v_plist_id); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 2016, __pyx_L1_error)
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/private/var/folders/rz/zx876pv95_39jqfx9hwszfq00000gn/T/pip-install-uj6hq2xz/h5py_235d3597fd094986b308a5244243c308/h5py/defs.c:34606:68: error: too few arguments to function call, expected 4, have 3
__pyx_t_1 = H5Sencode(__pyx_v_obj_id, __pyx_v_buf, __pyx_v_nalloc); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 3303, __pyx_L1_error)
~~~~~~~~~ ^
/opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/include/H5Spublic.h:373:15: note: 'H5Sencode2' declared here
H5_DLL herr_t H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl);
^
2 warnings and 6 errors generated.
error: command '/usr/bin/clang' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
WARNING: No metadata found in /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages
Rolling back uninstall of h5py
Moving to /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/h5py-3.6.0.dist-info/
from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/~5py-3.6.0.dist-info
Moving to /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/h5py/
from /opt/homebrew/Caskroom/miniforge/base/envs/pytorch_env/lib/python3.8/site-packages/~5py
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> h5py

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.

My python version: 3.8.13

By the way, I have tried to build from source, but this problem of h5py still exists

[mopper97]

Same issue for me with python version 3.10.4

[mamodrzejewski]

Having the same error as of July 2022 with both Python 3.8 and 3.9. Help would be greatly appreciated!

[JamesLloydPartington]

I am also having this issue. I have tried Python 3.7, 3.8 and 3.9.

[shahanneda]

same issue here, anyone figure this out?