forked from microbiomedata/nmdc-schema
-
Notifications
You must be signed in to change notification settings - Fork 0
/
portal_enums.yaml
79 lines (79 loc) · 2 KB
/
portal_enums.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
name: portal_enums
description: This file defines terms that are shared by the portal_*.yaml files that were previously grouped in a portal/ directory
title: 'NMDC Schema supplement for Submission Portal: shared enumerations'
id: https://w3id.org/nmdc/portal_enums
license: https://creativecommons.org/publicdomain/zero/1.0/
prefixes:
nmdc: https://w3id.org/nmdc/
default_prefix: nmdc
enums:
SampleTypeEnum:
permissible_values:
soil:
soil - water extract:
plant associated:
sediment:
water:
DNASampleFormatEnum:
permissible_values:
10 mM Tris-HCl: { }
DNAStable: { }
Ethanol: { }
Low EDTA TE: { }
MDA reaction buffer: { }
PBS: { }
Pellet: { }
RNAStable: { }
TE: { }
Water: { }
Gentegra-DNA: { }
Gentegra-RNA: { }
JgiContTypeEnum:
permissible_values:
plate: { }
tube: { }
YesNoEnum:
description: replaces DnaDnaseEnum and DnaseRnaEnum
permissible_values:
'no': { }
'yes': { }
RNASampleFormatEnum:
name: RNASampleFormatEnum
from_schema: https://w3id.org/nmdc/portal/jgi_metatranscriptomics
permissible_values:
10 mM Tris-HCl:
text: 10 mM Tris-HCl
DNAStable:
text: DNAStable
Ethanol:
text: Ethanol
Low EDTA TE:
text: Low EDTA TE
MDA reaction buffer:
text: MDA reaction buffer
PBS:
text: PBS
Pellet:
text: Pellet
RNAStable:
text: RNAStable
TE:
text: TE
Water:
text: Water
Gentegra-DNA:
text: Gentegra-DNA
Gentegra-RNA:
text: Gentegra-RNA
AnalysisTypeEnum:
permissible_values:
metabolomics:
metagenomics:
description: Standard short-read metagenomic sequencing
title: Metagenomics
metagenomics_long_read:
description: Long-read metagenomic sequencing
title: Metagenomics (long read)
metaproteomics:
metatranscriptomics:
natural organic matter: