v1.3.0

What's Changed

• fix: GET /nmdcschema/functional_annotation_agg by @dwinston in #426
• Replace docker-compose with docker compose by @turbomam in #436
• lint-check and style-normalize Python files; commit and push restyled files by @dwinston in #439
• cookie auth by @dwinston in #441
• Update nmdc-schema from v9.3.2 to v10.0.0 by @eecavanna in #451
• Rename env vars to ORCID_NMDC_CLIENT_{ID,SECRET} by @PeopleMakeCulture in #446
• 437 co-locate API usage documentation on SwaggerUI by @PeopleMakeCulture in #455
• feat: get plaintext orcid jwt via cookie by @dwinston in #458
• create aggregate command for query:run endpoint by @PeopleMakeCulture in #454
• NEON pipeline infrastructure refactoring by @sujaypatil96 in #448

New Contributors

• @turbomam made their first contribution in #436

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

• NEON benthic samples ingest pipeline by @sujaypatil96 in #308
• Update nmdc-schema package from 9.2.0 to 9.3.1 by @eecavanna in #419
• Upgrade to nmdc-schema 9.3.2 by @pkalita-lbl in #420

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Allow Biosample.env_package to be populated from submission-level data by @pkalita-lbl in #409
• fix: unique index on username for users collection by @dwinston in #418
• /metadata/json:submit is restricted to permitted users
• anyone with an ORCiD account can now create an API account

Full Changelog: v1.0.14...v1.1.0

v1.0.14

What's Changed

• Misc. updates to gold_translator.py by @sujaypatil96 in #384
• feat: redirect to data portal landing pages for sty-, bsm- by @dwinston in #405
• allow mongodb update command via POST /query:run by @dwinston in #411

Full Changelog: v1.0.13...v1.0.14

v1.0.13

What's Changed

• Mix in orcid jwt flow with client_credentials flow by @dwinston in #404
• change localhost to 127.0.0.1 in readme by @PeopleMakeCulture in #361
• Remove username lists from error messages in HTTP responses by @eecavanna in #400
• Update nmdc-schema to v9.2.0 and implement migration notebook by @eecavanna in #407

Full Changelog: v1.0.12...v1.0.13

v1.0.12

What's Changed

• Updates to submission portal-to-Mongo pipeline to support GLBRC data by @pkalita-lbl in #383
• Add PyPI and DockerHub links to README.md by @eecavanna in #398
• ensure no w3id.org loop; use data portal API by @dwinston in #403

Full Changelog: v1.0.11...v1.0.12

v1.0.11

What's Changed

• Update .dockerignore to ensure "clean" in-container git working directory by @dwinston in #396

Full Changelog: v1.0.10...v1.0.11

v1.0.10

What's Changed

• fix: include mongo-command writeErrors for http response code by @dwinston in #375
• add checksum timestamp changes by @brynnz22 in #371
• fix: coerce pydantic AnyUri to str when needed by @dwinston in #377
• 529 add ncbi biosample and project ids to neon soil by @mbthornton-lbl in #354
• add typecodes enpoint by @dwinston in #386
• Separate dev and production deployments in GitHub workflow by @pkalita-lbl in #382
• fix: Handle anyOf in JSON Schema property by @eecavanna in #379
• Replace illegal variable defined using other variable by @pkalita-lbl in #389
• Do full depth checkout so setuptools-scm can detect version by @pkalita-lbl in #390
• Revert to using env context for variables by @pkalita-lbl in #391
• Use local path context when running docker build so that it knows about git tags by @pkalita-lbl in #392
• Actually push the docker image, but not if running in a fork by @pkalita-lbl in #393
• Fix use of boolean var by @pkalita-lbl in #394
• Env context only available in steps.if by @pkalita-lbl in #395

Full Changelog: v1.0.9...v1.0.10

v1.0.9

What's Changed

• Create notebook for migrating data from nmdc-schema 8.1.2 to 9.0.4 by @eecavanna in #365
• Update nmdc-schema package from 8.1.2 to 9.0.4 by @eecavanna in #368
• Update nmdc-schema package from 9.0.4 to 9.1.0 by @eecavanna in #370

Full Changelog: v1.0.8...v1.0.9

v1.0.8

What's Changed

• Implement Python notebook for Mongo migration from 8.0.0 to 8.1.2 by @eecavanna in #358
• Update nmdc-schema package from 8.0.0 to 8.1.2 by @eecavanna in #366

Full Changelog: v1.0.7...v1.0.8