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logic will need to be added to decide what workflow component to run for nmdc:MetatranscriptomeExpressionAnalysis.
nmdc:MetatranscriptomeExpressionAnalysis is a new class which doesn't have any existing scheduler logic. The code use all docs (being used by the ref integrity squad) or an aggregation will need to traverse from omics_processing_set to library_preparation_set records to determine which of the following to run Expression Analysis Antisense - if library_preparation_set.stranded_orientation ='antisense orientation' Expression Analysis Sense - if library_preparation_set.stranded_orientation ='sense orientation' Expression Analysis Nonstranded -if is_stranded = false
else run Expression Analysis Sense (default for JGI libraries)
The text was updated successfully, but these errors were encountered:
I'm going to backlog this. The MVP for metatranscriptomes is to use the workflows config, where only one Expression workflow is enabled at once, to set up the correct inputs.json instead of using this logic.
Depends on #222
logic will need to be added to decide what workflow component to run for nmdc:MetatranscriptomeExpressionAnalysis.
nmdc:MetatranscriptomeExpressionAnalysis is a new class which doesn't have any existing scheduler logic. The code use all docs (being used by the ref integrity squad) or an aggregation will need to traverse from
omics_processing_set
tolibrary_preparation_set
records to determine which of the following to runExpression Analysis Antisense
- if library_preparation_set.stranded_orientation ='antisense orientation'Expression Analysis Sense
- if library_preparation_set.stranded_orientation ='sense orientation'Expression Analysis Nonstranded
-if is_stranded = falseelse run
Expression Analysis Sense
(default for JGI libraries)The text was updated successfully, but these errors were encountered: