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update import logic to update OmicsProcessing record #239

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aclum opened this issue Aug 20, 2024 · 2 comments
Open

update import logic to update OmicsProcessing record #239

aclum opened this issue Aug 20, 2024 · 2 comments

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@aclum
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aclum commented Aug 20, 2024

The import automation should make a DataObject record and add is to has_output on the NucelotideSequencing record. The NucelotideSequencing record will be part of the import csv file. I believe nmdc_automation/import_automation/activity_mapper.py is where this needs to be updated. It needs to do this instead of the current behavior which is to make a ReadQc record without an input data object.

We talked about doing this with a queries:run command since the NucelotideSequencing record will already exist.

@ssarrafan
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@mbthornton-lbl @scanon @aclum can this one be closed this sprint?

@aclum
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aclum commented Oct 4, 2024

Work has not started on this, moving to the next sprint. This will be worked on once #251 is done.

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