From ae09cfda86e88ca0de387bcea46d4cb8f272b2eb Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Wed, 24 Jul 2024 14:01:25 -0700 Subject: [PATCH] 10.7.0 --- project/thirdparty/GoldEcosystemTree.json | 76 +++++++++---------- .../datamodel/nmdc_submission_schema.py | 2 +- 2 files changed, 39 insertions(+), 39 deletions(-) diff --git a/project/thirdparty/GoldEcosystemTree.json b/project/thirdparty/GoldEcosystemTree.json index dee9fd32..ba90cc8d 100644 --- a/project/thirdparty/GoldEcosystemTree.json +++ b/project/thirdparty/GoldEcosystemTree.json @@ -2,7 +2,7 @@ "name": "Ecosystems", "children": [ -{"name": "Engineered", "count": "17321" , "url": "search?Biosample.Ecosystem=Engineered" , "children" : [ +{"name": "Engineered", "count": "17325" , "url": "search?Biosample.Ecosystem=Engineered" , "children" : [ {"name": "Animal feed production" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production" , "children" : [ {"name": "Fermentation" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation" , "children" : [ {"name": "Swine waste with corn" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation&Biosample.Ecosystem+Subtype=Swine waste with corn" , "children" : [ @@ -261,7 +261,7 @@ }] }, - {"name": "Bioreactor" , "count": "1685" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor" , "children" : [ + {"name": "Bioreactor" , "count": "1689" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor" , "children" : [ {"name": "Aerobic" , "count": "163" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Aerobic" , "children" : [ {"name": "AGS (Aerobic granular sludge)" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Aerobic&Biosample.Ecosystem+Subtype=AGS (Aerobic granular sludge)" , "children" : [ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Aerobic&Biosample.Ecosystem+Subtype=AGS (Aerobic granular sludge)&Biosample.Specific Ecosystem=Unclassified" }] @@ -280,7 +280,7 @@ }] }, - {"name": "Anaerobic" , "count": "1137" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic" , "children" : [ + {"name": "Anaerobic" , "count": "1141" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic" , "children" : [ {"name": "Biofilm" , "count": "3" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Biofilm" , "children" : [ {"name": "Unclassified" , "count": "3" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Biofilm&Biosample.Specific Ecosystem=Unclassified" }] }, @@ -301,8 +301,8 @@ {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Effluent&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Inoculum" , "count": "16" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Inoculum" , "children" : [ - {"name": "Unclassified" , "count": "16" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Inoculum&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Inoculum" , "count": "20" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Inoculum" , "children" : [ + {"name": "Unclassified" , "count": "20" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Inoculum&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Leachate" , "count": "3" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Bioreactor&Biosample.Ecosystem+Type=Anaerobic&Biosample.Ecosystem+Subtype=Leachate" , "children" : [ @@ -2032,7 +2032,7 @@ }] } , -{"name": "Environmental", "count": "94882" , "url": "search?Biosample.Ecosystem=Environmental" , "children" : [ +{"name": "Environmental", "count": "95435" , "url": "search?Biosample.Ecosystem=Environmental" , "children" : [ {"name": "Air" , "count": "1638" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Air" , "children" : [ {"name": "Indoor Air" , "count": "349" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Air&Biosample.Ecosystem+Type=Indoor Air" , "children" : [ {"name": "Air scrubber" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Air&Biosample.Ecosystem+Type=Indoor Air&Biosample.Ecosystem+Subtype=Air scrubber" , "children" : [ @@ -2075,7 +2075,7 @@ }] }, - {"name": "Aquatic" , "count": "55112" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic" , "children" : [ + {"name": "Aquatic" , "count": "55434" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic" , "children" : [ {"name": "Acidic" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Acidic" , "children" : [ {"name": "Acidic hypersaline lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Acidic&Biosample.Ecosystem+Subtype=Acidic hypersaline lake" , "children" : [ {"name": "Microbial mat" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Acidic&Biosample.Ecosystem+Subtype=Acidic hypersaline lake&Biosample.Specific Ecosystem=Microbial mat" }, @@ -2116,8 +2116,8 @@ }] }, - {"name": "Deep subsurface" , "count": "2632" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface" , "children" : [ - {"name": "Groundwater" , "count": "2443" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater" , "children" : [ + {"name": "Deep subsurface" , "count": "2728" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface" , "children" : [ + {"name": "Groundwater" , "count": "2539" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater" , "children" : [ {"name": "Acid-saline drainage" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Acid-saline drainage" }, {"name": "Acidic spring" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Acidic spring" }, @@ -2164,7 +2164,7 @@ {"name": "Spring sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Spring sediment" }, - {"name": "Unclassified" , "count": "1996" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Unclassified" }, + {"name": "Unclassified" , "count": "2092" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Unclassified" }, {"name": "Well" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Well" }, @@ -2202,7 +2202,7 @@ }] }, - {"name": "Freshwater" , "count": "19527" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater" , "children" : [ + {"name": "Freshwater" , "count": "19564" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater" , "children" : [ {"name": "Agricultural field" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Agricultural field" , "children" : [ {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Agricultural field&Biosample.Specific Ecosystem=Unclassified" }] }, @@ -2391,10 +2391,10 @@ {"name": "Unclassified" , "count": "14" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Microbialites&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Pond" , "count": "649" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Pond" , "children" : [ + {"name": "Pond" , "count": "672" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Pond" , "children" : [ {"name": "Sediment" , "count": "306" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Pond&Biosample.Specific Ecosystem=Sediment" }, - {"name": "Unclassified" , "count": "343" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Pond&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "366" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Pond&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Puddle" , "count": "4" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Puddle" , "children" : [ @@ -2413,8 +2413,8 @@ {"name": "Unclassified" , "count": "292" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Reservoir&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "River" , "count": "3824" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River" , "children" : [ - {"name": "Microbial mats" , "count": "189" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Microbial mats" }, + {"name": "River" , "count": "3838" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River" , "children" : [ + {"name": "Microbial mats" , "count": "193" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Microbial mats" }, {"name": "Periphyton" , "count": "9" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Periphyton" }, @@ -2424,7 +2424,7 @@ {"name": "Sediment" , "count": "859" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Sediment" }, - {"name": "Unclassified" , "count": "2615" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "2625" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=River&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Sediment" , "count": "95" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Sediment" , "children" : [ @@ -2498,7 +2498,7 @@ }] }, - {"name": "Marine" , "count": "26975" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine" , "children" : [ + {"name": "Marine" , "count": "27164" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine" , "children" : [ {"name": "Abyssopelagic" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Abyssopelagic" , "children" : [ {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Abyssopelagic&Biosample.Specific Ecosystem=Unclassified" }] }, @@ -2535,14 +2535,14 @@ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Biofouling&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Coastal" , "count": "4452" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal" , "children" : [ + {"name": "Coastal" , "count": "4640" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal" , "children" : [ {"name": "Brine" , "count": "12" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal&Biosample.Specific Ecosystem=Brine" }, {"name": "Phytoplankton bloom" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal&Biosample.Specific Ecosystem=Phytoplankton bloom" }, {"name": "Sediment" , "count": "525" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal&Biosample.Specific Ecosystem=Sediment" }, - {"name": "Unclassified" , "count": "3915" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "4103" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Coastal lagoon" , "count": "76" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Coastal lagoon" , "children" : [ @@ -2639,7 +2639,7 @@ {"name": "Unclassified" , "count": "1278" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Inlet&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Intertidal zone" , "count": "3423" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone" , "children" : [ + {"name": "Intertidal zone" , "count": "3424" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone" , "children" : [ {"name": "Beach/Shore" , "count": "750" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Beach/Shore" }, {"name": "Coral reef" , "count": "229" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Coral reef" }, @@ -2664,7 +2664,7 @@ {"name": "Salt marsh" , "count": "490" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt marsh" }, - {"name": "Salt marsh sediment" , "count": "192" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt marsh sediment" }, + {"name": "Salt marsh sediment" , "count": "193" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt marsh sediment" }, {"name": "Salt pond" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt pond" }, @@ -3101,7 +3101,7 @@ }] }, - {"name": "Terrestrial" , "count": "38132" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial" , "children" : [ + {"name": "Terrestrial" , "count": "38363" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial" , "children" : [ {"name": "Agricultural field" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Agricultural field" , "children" : [ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Agricultural field&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Agricultural field&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] @@ -3366,7 +3366,7 @@ }] }, - {"name": "Soil" , "count": "35104" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil" , "children" : [ + {"name": "Soil" , "count": "35335" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil" , "children" : [ {"name": "Agricultural land" , "count": "7405" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Agricultural land" , "children" : [ {"name": "Bulk soil" , "count": "4285" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Agricultural land&Biosample.Specific Ecosystem=Bulk soil" }, @@ -3443,14 +3443,14 @@ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Coastal area&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Contaminated" , "count": "105" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated" , "children" : [ + {"name": "Contaminated" , "count": "106" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated" , "children" : [ {"name": "Oil-contaminated" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated&Biosample.Specific Ecosystem=Oil-contaminated" }, {"name": "Pesticide" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated&Biosample.Specific Ecosystem=Pesticide" }, {"name": "Unclassified" , "count": "59" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated&Biosample.Specific Ecosystem=Unclassified" }, - {"name": "Uranium contaminated" , "count": "44" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated&Biosample.Specific Ecosystem=Uranium contaminated" }] + {"name": "Uranium contaminated" , "count": "45" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Contaminated&Biosample.Specific Ecosystem=Uranium contaminated" }] }, {"name": "Desert" , "count": "411" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Desert" , "children" : [ @@ -3511,12 +3511,12 @@ {"name": "Unclassified" , "count": "94" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Grasslands" , "count": "3285" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands" , "children" : [ + {"name": "Grasslands" , "count": "3445" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands" , "children" : [ {"name": "Bulk soil" , "count": "354" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Bulk soil" }, {"name": "Pasture" , "count": "137" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Pasture" }, - {"name": "Unclassified" , "count": "2794" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "2954" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Gravesite" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Gravesite" , "children" : [ @@ -3733,12 +3733,12 @@ {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Tailings&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Temperate forest" , "count": "3765" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest" , "children" : [ + {"name": "Temperate forest" , "count": "3767" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest" , "children" : [ {"name": "A horizon/Topsoil" , "count": "12" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=A horizon/Topsoil" }, {"name": "B horizon/Subsoil" , "count": "11" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=B horizon/Subsoil" }, - {"name": "Bulk soil" , "count": "2521" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=Bulk soil" }, + {"name": "Bulk soil" , "count": "2522" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=Bulk soil" }, {"name": "C horizon/Substratum" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=C horizon/Substratum" }, @@ -3746,7 +3746,7 @@ {"name": "Humus" , "count": "33" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=Humus" }, - {"name": "Mineral soil" , "count": "312" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=Mineral soil" }, + {"name": "Mineral soil" , "count": "313" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=Mineral soil" }, {"name": "O horizon/Organic" , "count": "444" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Temperate forest&Biosample.Specific Ecosystem=O horizon/Organic" }, @@ -3787,7 +3787,7 @@ {"name": "Unclassified" , "count": "455" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Tundra&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Unclassified" , "count": "10261" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "10329" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ {"name": "Agricultural land" , "count": "1325" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Agricultural land" }, {"name": "Alpine" , "count": "46" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Alpine" }, @@ -3826,7 +3826,7 @@ {"name": "Tropical rainforest" , "count": "86" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Tropical rainforest" }, - {"name": "Unclassified" , "count": "6671" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "6739" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Vadose zone" , "count": "64" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Vadose zone" , "children" : [ @@ -3898,7 +3898,7 @@ }] } , -{"name": "Host-associated", "count": "94852" , "url": "search?Biosample.Ecosystem=Host-associated" , "children" : [ +{"name": "Host-associated", "count": "94895" , "url": "search?Biosample.Ecosystem=Host-associated" , "children" : [ {"name": "Algae" , "count": "649" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Algae" , "children" : [ {"name": "Biocrust" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Algae&Biosample.Ecosystem+Type=Biocrust" , "children" : [ {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Algae&Biosample.Ecosystem+Type=Biocrust&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ @@ -7687,7 +7687,7 @@ }] }, - {"name": "Plants" , "count": "22584" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants" , "children" : [ + {"name": "Plants" , "count": "22627" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants" , "children" : [ {"name": "Bryophytes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Bryophytes" , "children" : [ {"name": "Hornworts" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Bryophytes&Biosample.Ecosystem+Subtype=Hornworts" , "children" : [ {"name": "Rhizoids" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Bryophytes&Biosample.Ecosystem+Subtype=Hornworts&Biosample.Specific Ecosystem=Rhizoids" }, @@ -7876,7 +7876,7 @@ }] }, - {"name": "Roots" , "count": "17057" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots" , "children" : [ + {"name": "Roots" , "count": "17100" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots" , "children" : [ {"name": "Aerial root" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Aerial root" , "children" : [ {"name": "Mucilage" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Aerial root&Biosample.Specific Ecosystem=Mucilage" }, @@ -7905,10 +7905,10 @@ {"name": "Unclassified" , "count": "112" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizoplane&Biosample.Specific Ecosystem=Unclassified" }] }, - {"name": "Rhizosphere" , "count": "11197" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere" , "children" : [ - {"name": "Soil" , "count": "2184" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere&Biosample.Specific Ecosystem=Soil" }, + {"name": "Rhizosphere" , "count": "11240" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere" , "children" : [ + {"name": "Soil" , "count": "2189" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere&Biosample.Specific Ecosystem=Soil" }, - {"name": "Unclassified" , "count": "9013" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere&Biosample.Specific Ecosystem=Unclassified" }] + {"name": "Unclassified" , "count": "9051" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Rhizosphere&Biosample.Specific Ecosystem=Unclassified" }] }, {"name": "Taproot" , "count": "71" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Roots&Biosample.Ecosystem+Subtype=Taproot" , "children" : [ diff --git a/src/nmdc_submission_schema/datamodel/nmdc_submission_schema.py b/src/nmdc_submission_schema/datamodel/nmdc_submission_schema.py index cded9def..7f4ef0d0 100644 --- a/src/nmdc_submission_schema/datamodel/nmdc_submission_schema.py +++ b/src/nmdc_submission_schema/datamodel/nmdc_submission_schema.py @@ -1,5 +1,5 @@ # Auto generated from nmdc_submission_schema.yaml by pythongen.py version: 0.0.1 -# Generation date: 2024-07-23T10:27:46 +# Generation date: 2024-07-24T13:56:58 # Schema: nmdc_submission_schema # # id: https://example.com/nmdc_submission_schema