diff --git a/test.vcf b/test_data/test_generic.vcf
similarity index 99%
rename from test.vcf
rename to test_data/test_generic.vcf
index 98b3838..17281d5 100644
--- a/test.vcf
+++ b/test_data/test_generic.vcf
@@ -1,7 +1,7 @@
 ##fileformat=VCFv4.2
 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"
-##FORMAT=<ID=AD,Number=G,Type=Integer,Description="AllelicDepthsofREFandALT(s)intheorderlisted">
-##FORMAT=<ID=DP,Number=1,Type=Integer,Description="ReadDepth">
+##FORMAT=<ID=AD,Number=G,Type=Integer,Description="Allelic Depths of REF and ALT(s) in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR	NORMAL
 1	11290178	.	TA	T	.	.	.	GT:AD:DP	0/1:10,10:20	0/0:30,5:35
 1	15557977	.	TG	CA	.	.	.	GT:AD:DP	0/1:11,5:16	0/0:21,1:22
diff --git a/test_data/test_mutect.vcf b/test_data/test_mutect.vcf
new file mode 100644
index 0000000..e75923b
--- /dev/null
+++ b/test_data/test_mutect.vcf
@@ -0,0 +1,602 @@
+##fileformat=VCFv4.1
+##FILTER=<ID=PASS,Description="Accept as a confident somatic mutation">
+##FILTER=<ID=REJECT,Description="Rejected as a confident somatic mutation">
+##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=BQ,Number=A,Type=Float,Description="Average base quality for reads supporting alleles">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=FA,Number=A,Type=Float,Description="Allele fraction of the alternate allele with regard to reference">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##FORMAT=<ID=SS,Number=1,Type=Integer,Description="Variant status relative to non-adjacent Normal,0=wildtype,1=germline,2=somatic,3=LOH,4=post-transcriptional modification,5=unknown">
+##GATKCommandLine=<ID=MuTect,Version=2.7-1-g42d771f,Date="Tue Feb 18 13:13:14 PST 2014",Epoch=1392757994128,CommandLineOptions="analysis_type=MuTect input_file=[/cbio/grlab/projects/TCGA/PanCancer/exome/bam-08-19-2013/GBM/TCGA-02-0047-01A-01D-1490-08.3c04884f-a35a-4deb-95a0-b2a86cacce40.v4.star.bam, /cbio/grlab/projects/TCGA/PanCancer/exome/bam-08-19-2013/GBM/TCGA-02-0047-10A-01D-1490-08.3c298a99-4aed-41fc-951f-7c70fb8aa0a0.v4.star.bam] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/cbio/cslab/nobackup/srv/Homo_sapiens.GRCh37.74.dna.primary_assembly.reordered.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false noop=false enable_extended_output=false enable_qscore_output=false artifact_detection_mode=false tumor_sample_name=TCGA-02-0047-01A-01D-1490-08 bam_tumor_sample_name=null normal_sample_name=TCGA-02-0047-10A-01D-1490-08 force_output=false force_alleles=false only_passing_calls=false initial_tumor_lod=4.0 tumor_lod=6.3 fraction_contamination=0.02 minimum_mutation_cell_fraction=0.0 normal_lod=2.2 normal_artifact_lod=1.0 strand_artifact_lod=2.0 strand_artifact_power_threshold=0.9 dbsnp_normal_lod=5.5 minimum_normal_allele_fraction=0.0 tumor_f_pretest=0.005 min_qscore=5 gap_events_threshold=3 heavily_clipped_read_fraction=0.3 fraction_mapq0_threshold=0.5 pir_median_threshold=10.0 pir_mad_threshold=3.0 required_maximum_alt_allele_mapping_quality_score=20 max_alt_alleles_in_normal_count=2 max_alt_alleles_in_normal_qscore_sum=20 max_alt_allele_in_normal_fraction=0.03 power_constant_qscore=30 power_constant_af=0.30000001192092896 vcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub dbsnp=[(RodBinding name=dbsnp source=/cbio/cslab/nobackup/srv/dbsnp_138_human_common.norm_indels.vcf)] cosmic=[] normal_panel=[] coverage_file=null coverage_20_q20_file=null power_file=null tumor_depth_file=null normal_depth_file=null filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
+##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
+##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic event">
+##INFO=<ID=VT,Number=1,Type=String,Description="Variant type, can be SNP, INS or DEL">
+##contig=<ID=1,length=249250621>
+##contig=<ID=2,length=243199373>
+##contig=<ID=3,length=198022430>
+##contig=<ID=4,length=191154276>
+##contig=<ID=5,length=180915260>
+##contig=<ID=6,length=171115067>
+##contig=<ID=7,length=159138663>
+##contig=<ID=8,length=146364022>
+##contig=<ID=9,length=141213431>
+##contig=<ID=10,length=135534747>
+##contig=<ID=11,length=135006516>
+##contig=<ID=12,length=133851895>
+##contig=<ID=13,length=115169878>
+##contig=<ID=14,length=107349540>
+##contig=<ID=15,length=102531392>
+##contig=<ID=16,length=90354753>
+##contig=<ID=17,length=81195210>
+##contig=<ID=18,length=78077248>
+##contig=<ID=19,length=59128983>
+##contig=<ID=20,length=63025520>
+##contig=<ID=21,length=48129895>
+##contig=<ID=22,length=51304566>
+##contig=<ID=X,length=155270560>
+##contig=<ID=Y,length=59373566>
+##contig=<ID=MT,length=16569>
+##contig=<ID=GL000191.1,length=106433>
+##contig=<ID=GL000192.1,length=547496>
+##contig=<ID=GL000193.1,length=189789>
+##contig=<ID=GL000194.1,length=191469>
+##contig=<ID=GL000195.1,length=182896>
+##contig=<ID=GL000196.1,length=38914>
+##contig=<ID=GL000197.1,length=37175>
+##contig=<ID=GL000198.1,length=90085>
+##contig=<ID=GL000199.1,length=169874>
+##contig=<ID=GL000200.1,length=187035>
+##contig=<ID=GL000201.1,length=36148>
+##contig=<ID=GL000202.1,length=40103>
+##contig=<ID=GL000203.1,length=37498>
+##contig=<ID=GL000204.1,length=81310>
+##contig=<ID=GL000205.1,length=174588>
+##contig=<ID=GL000206.1,length=41001>
+##contig=<ID=GL000207.1,length=4262>
+##contig=<ID=GL000208.1,length=92689>
+##contig=<ID=GL000209.1,length=159169>
+##contig=<ID=GL000210.1,length=27682>
+##contig=<ID=GL000211.1,length=166566>
+##contig=<ID=GL000212.1,length=186858>
+##contig=<ID=GL000213.1,length=164239>
+##contig=<ID=GL000214.1,length=137718>
+##contig=<ID=GL000215.1,length=172545>
+##contig=<ID=GL000216.1,length=172294>
+##contig=<ID=GL000217.1,length=172149>
+##contig=<ID=GL000218.1,length=161147>
+##contig=<ID=GL000219.1,length=179198>
+##contig=<ID=GL000220.1,length=161802>
+##contig=<ID=GL000221.1,length=155397>
+##contig=<ID=GL000222.1,length=186861>
+##contig=<ID=GL000223.1,length=180455>
+##contig=<ID=GL000224.1,length=179693>
+##contig=<ID=GL000225.1,length=211173>
+##contig=<ID=GL000226.1,length=15008>
+##contig=<ID=GL000227.1,length=128374>
+##contig=<ID=GL000228.1,length=129120>
+##contig=<ID=GL000229.1,length=19913>
+##contig=<ID=GL000230.1,length=43691>
+##contig=<ID=GL000231.1,length=27386>
+##contig=<ID=GL000232.1,length=40652>
+##contig=<ID=GL000233.1,length=45941>
+##contig=<ID=GL000234.1,length=40531>
+##contig=<ID=GL000235.1,length=34474>
+##contig=<ID=GL000236.1,length=41934>
+##contig=<ID=GL000237.1,length=45867>
+##contig=<ID=GL000238.1,length=39939>
+##contig=<ID=GL000239.1,length=33824>
+##contig=<ID=GL000240.1,length=41933>
+##contig=<ID=GL000241.1,length=42152>
+##contig=<ID=GL000242.1,length=43523>
+##contig=<ID=GL000243.1,length=43341>
+##contig=<ID=GL000244.1,length=39929>
+##contig=<ID=GL000245.1,length=36651>
+##contig=<ID=GL000246.1,length=38154>
+##contig=<ID=GL000247.1,length=36422>
+##contig=<ID=GL000248.1,length=39786>
+##contig=<ID=GL000249.1,length=38502>
+##reference=file:///cbio/cslab/nobackup/srv/Homo_sapiens.GRCh37.74.dna.primary_assembly.reordered.fa
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TCGA-12-3456-10B-01D-7890-09	TCGA-12-3456-01B-01D-7890-09
+19	10746325	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:64,0:.:64:0.00:0	0/1:42,4:29:46:0.087:2
+4	8216080	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:22,0:.:22:0.00:0	0/1:21,3:32:24:0.125:2
+15	44020997	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:61,1:.:62:0.016:0	0/1:38,4:34:42:0.095:2
+13	113883815	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:57,0:.:57:0.00:0	0/1:62,4:31:66:0.061:2
+13	19271124	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:36,0:.:36:0.00:0	0/1:33,3:31:36:0.083:2
+19	40368067	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:11,0:.:11:0.00:0	0/1:11,5:31:16:0.313:2
+21	36164753	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:13,0:.:13:0.00:0	0/1:9,3:29:12:0.250:2
+19	4155155	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:35,0:.:35:0.00:0	0/1:35,3:31:38:0.079:2
+2	220110934	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:10,0:.:10:0.00:0	0/1:13,3:30:16:0.188:2
+6	74992087	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:21,0:.:21:0.00:0	0/1:43,3:34:46:0.065:2
+16	33396230	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:8,0:.:8:0.00:0	0/1:9,4:29:13:0.308:2
+1	94496461	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:18,0:.:18:0.00:0	0/1:30,3:32:33:0.091:2
+19	54691899	rs113818560	A	G	.	PASS	DB;SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:34,1:.:35:0.029:0	0/1:24,8:37:32:0.250:2
+5	175467990	.	A	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:9,0:.:9:0.00:0	0/1:2,6:31:8:0.750:2
+11	55972783	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:62,0:.:62:0.00:0	0/1:54,4:33:58:0.069:2
+2	166025055	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:11,0:.:11:0.00:0	0/1:1,2:33:3:0.667:2
+6	27979154	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:252,0:.:252:0.00:0	0/1:177,65:38:242:0.269:2
+9	100767172	rs191108624	A	T	.	PASS	DB;SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:36,0:.:36:0.00:0	0/1:36,3:32:39:0.077:2
+15	78278781	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:32,0:.:32:0.00:0	0/1:30,3:32:33:0.091:2
+16	1616379	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:58,0:.:58:0.00:0	0/1:47,3:33:50:0.060:2
+21	39426785	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:36,0:.:36:0.00:0	0/1:32,3:31:35:0.086:2
+7	99821483	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:199,0:.:199:0.00:0	0/1:126,57:30:183:0.311:2
+7	65978086	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:18,0:.:18:0.00:0	0/1:22,3:32:25:0.120:2
+10	42362855	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:15,0:.:14:0.00:0	0/1:0,2:34:2:1.00:2
+9	139391999	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:58,0:.:58:0.00:0	0/1:39,3:32:42:0.071:2
+2	237272742	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:13,0:.:13:0.00:0	0/1:17,3:36:20:0.150:2
+4	66467624	.	T	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:180,0:.:180:0.00:0	0/1:201,13:30:214:0.061:2
+12	52681203	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:31,0:.:31:0.00:0	0/1:28,3:31:31:0.097:2
+11	57297450	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:23,0:.:23:0.00:0	0/1:28,3:35:31:0.097:2
+1	203673042	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:14,0:.:14:0.00:0	0/1:15,3:33:18:0.167:2
+19	4317290	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:104,0:.:104:0.00:0	0/1:87,5:32:92:0.054:2
+5	1260470	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:61,0:.:61:0.00:0	0/1:42,4:32:46:0.087:2
+17	3776491	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:29,0:.:29:0.00:0	0/1:5,4:34:9:0.444:2
+5	65459454	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:9,0:.:9:0.00:0	0/1:7,3:32:10:0.300:2
+19	36224597	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:17,0:.:17:0.00:0	0/1:17,3:30:20:0.150:2
+5	43651707	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:29,0:.:29:0.00:0	0/1:29,3:32:32:0.094:2
+10	94833694	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:17,0:.:17:0.00:0	0/1:10,4:30:14:0.286:2
+1	159850238	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:90,0:.:90:0.00:0	0/1:89,4:33:93:0.043:2
+4	139101936	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:61,0:.:61:0.00:0	0/1:31,3:34:34:0.088:2
+1	54555557	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:32,0:.:32:0.00:0	0/1:42,3:36:45:0.067:2
+7	100489818	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:31,0:.:31:0.00:0	0/1:26,3:32:29:0.103:2
+8	18793817	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:12,0:.:12:0.00:0	0/1:11,6:38:17:0.353:2
+12	1010012	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:29,0:.:29:0.00:0	0/1:28,3:32:31:0.097:2
+4	123239615	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:19,0:.:19:0.00:0	0/1:17,3:36:20:0.150:2
+4	187524424	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:76,0:.:76:0.00:0	0/1:64,4:33:68:0.059:2
+22	43734895	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:32,0:.:32:0.00:0	0/1:17,3:32:20:0.150:2
+4	49123041	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:53,1:.:52:0.019:0	0/1:36,4:38:40:0.100:2
+19	38845626	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:65,0:.:65:0.00:0	0/1:61,4:31:65:0.062:2
+8	2077271	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:59,0:.:59:0.00:0	0/1:65,5:27:70:0.071:2
+Y	13141043	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:31,0:.:30:0.00:0	0/1:10,3:33:13:0.231:2
+19	19431992	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:20,0:.:20:0.00:0	0/1:11,3:29:14:0.214:2
+X	114659536	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:16,0:.:16:0.00:0	0/1:17,4:31:21:0.190:2
+10	129676816	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:19,0:.:19:0.00:0	0/1:13,6:30:19:0.316:2
+2	27281111	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:21,0:.:21:0.00:0	0/1:10,3:35:13:0.231:2
+2	192550619	.	T	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:15,0:.:15:0.00:0	0/1:8,2:38:10:0.200:2
+9	123937579	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:11,0:.:11:0.00:0	0/1:33,3:31:36:0.083:2
+4	49112062	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:68,0:.:66:0.00:0	0/1:20,4:32:25:0.167:2
+16	30774380	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:36,0:.:36:0.00:0	0/1:46,3:33:49:0.061:2
+16	46386499	.	A	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:45,0:.:45:0.00:0	0/1:125,6:37:131:0.046:2
+15	85083141	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:39,0:.:39:0.00:0	0/1:40,4:29:44:0.091:2
+19	35656902	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:52,0:.:52:0.00:0	0/1:32,16:32:48:0.333:2
+8	66963615	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:23,0:.:24:0.00:0	0/1:25,5:31:30:0.167:2
+1	148591529	.	T	C	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:31,0:.:20:0.00:0	0/1:25,5:34:30:0.167:2
+20	43964582	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:66,0:.:66:0.00:0	0/1:50,22:30:72:0.306:2
+5	136834166	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:27,0:.:27:0.00:0	0/1:21,3:31:24:0.125:2
+5	176858789	.	A	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:21,0:.:21:0.00:0	0/1:7,3:27:10:0.300:2
+1	1563855	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:23,0:.:23:0.00:0	0/1:18,3:31:21:0.143:2
+1	62713420	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:29,0:.:29:0.00:0	0/1:37,5:31:42:0.119:2
+4	49318807	.	A	C	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:50,1:.:27:0.020:0	0/1:39,3:38:42:0.071:2
+15	42159146	.	T	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:10,0:.:11:0.00:0	0/1:4,6:32:10:0.600:2
+10	50574325	.	G	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:105,0:.:105:0.00:0	0/1:115,5:31:120:0.042:2
+7	36552679	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:39,0:.:39:0.00:0	0/1:31,3:32:34:0.088:2
+15	69223169	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:59,0:.:59:0.00:0	0/1:33,3:36:36:0.083:2
+6	108639359	.	A	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:11,0:.:11:0.00:0	0/1:9,2:40:11:0.182:2
+1	24122960	.	G	C	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:38,0:.:38:0.00:0	0/1:52,4:35:56:0.071:2
+1	224581414	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:23,0:.:23:0.00:0	0/1:33,3:32:36:0.083:2
+10	124896954	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:58,0:.:58:0.00:0	0/1:47,5:32:52:0.096:2
+11	93826543	.	A	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:86,0:.:86:0.00:0	0/1:89,4:37:93:0.043:2
+10	95380927	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:26,0:.:26:0.00:0	0/1:27,3:32:30:0.100:2
+5	36183815	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:47,1:.:48:0.021:0	0/1:40,3:37:43:0.070:2
+2	219894545	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:33,0:.:33:0.00:0	0/1:24,3:31:27:0.111:2
+6	32945038	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:14,0:.:14:0.00:0	0/1:19,3:32:22:0.136:2
+2	182399464	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:18,0:.:18:0.00:0	0/1:8,9:17:17:0.529:2
+4	68265997	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:35,1:.:37:0.028:0	0/1:3,5:30:8:0.625:2
+15	80988226	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:21,0:.:21:0.00:0	0/1:37,3:35:40:0.075:2
+14	75201782	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:29,0:.:29:0.00:0	0/1:21,3:33:24:0.125:2
+2	31590614	.	A	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:13,0:.:13:0.00:0	0/1:10,2:41:12:0.167:2
+6	88219079	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:28,0:.:28:0.00:0	0/1:33,3:32:36:0.083:2
+X	23751503	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:14,0:.:14:0.00:0	0/1:10,3:32:13:0.231:2
+X	69263364	.	A	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:42,0:.:42:0.00:0	0/1:35,3:36:38:0.079:2
+1	204410715	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:65,0:.:65:0.00:0	0/1:87,6:36:93:0.065:2
+18	51685979	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:51,0:.:51:0.00:0	0/1:59,4:30:63:0.063:2
+1	115124204	.	G	C	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:12,0:.:12:0.00:0	0/1:6,3:27:9:0.333:2
+1	2628292	.	A	C	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:8,0:.:7:0.00:0	0/1:13,3:33:16:0.188:2
+3	52379797	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:8,0:.:8:0.00:0	0/1:4,4:32:8:0.500:2
+15	42700308	.	C	G	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:19,0:.:19:0.00:0	0/1:12,3:39:15:0.200:2
+9	135976673	.	C	A	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:11,0:.:11:0.00:0	0/1:21,3:35:24:0.125:2
+3	101477377	.	G	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:9,0:.:9:0.00:0	0/1:6,6:18:12:0.500:2
+11	4661587	.	C	T	.	PASS	SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:270,0:.:270:0.00:0	0/1:236,68:32:304:0.224:2
+1	57420627	rs41452950	A	G	.	PASS	DB;SOMATIC;VT=SNP	GT:AD:BQ:DP:FA:SS	0:34,0:.:34:0.00:0	0/1:35,3:36:38:0.079:2
+5	147519674	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+5	177577138	rs7446073	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,2:.:2:1.00	0/1:0,2:39:2:1.00
+2	57398207	rs6545629	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:36:1:1.00
+9	69065571	.	T	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:77,1:.:77:0.013	0/1:68,1:32:69:0.014
+16	46434366	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:32,1:.:27:0.030	0/1:42,0:.:42:0.00
+9	11106013	rs1855442	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+Y	58996968	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:41,28:.:68:0.406	0/1:43,10:31:53:0.189
+1	64676548	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:58,0:.:58:0.00	0/1:56,3:32:59:0.051
+11	122426593	rs605922	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,3:40:3:1.00
+21	29289299	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+4	175414246	rs2612694	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,23:.:23:1.00	0/1:0,16:36:16:1.00
+21	15346815	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,0:.:1:0.00
+1	72051178	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:20:2:1.00
+4	57219523	rs6554347	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:29,34:.:63:0.540	0/1:30,22:38:52:0.423
+1	243327792	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:198,0:.:198:0.00	0/1:238,3:36:241:0.012
+4	3748679	rs35729104	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:37:2:1.00
+12	63302544	rs771986	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+2	2363052	rs2668823	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:32:2:1.00
+10	99226559	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:431,0:.:431:0.00	0/1:372,3:34:375:8.000e-03
+4	84117122	rs11726083	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,2:.:2:1.00	0/1:0,2:35:2:1.00
+1	191263053	rs1246842	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+7	42856862	rs687029	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+5	162763412	rs10072972	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:32:2:1.00
+12	74797577	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:30:2:1.00
+4	49129092	.	C	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:44,0:.:28:0.00	0/1:21,0:.:21:0.00
+3	62000229	.	C	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:0,1:40:1:1.00
+16	2880614	rs2190809	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:83,78:.:161:0.484	0/1:81,85:34:167:0.512
+20	13376357	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:33:2:1.00
+4	7391525	rs12650714	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,2:32:3:0.667
+17	79943123	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:11,0:.:11:0.00	0/1:7,0:.:7:0.00
+1	46283864	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:0,2:31:2:1.00
+22	22664878	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:12,0:.:12:0.00	0/1:23,2:31:25:0.080
+15	34414092	rs2568545	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:35:2:1.00
+2	145398686	rs80247874	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:33:2:1.00
+8	9746508	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,3:33:3:1.00
+X	125556987	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+17	7797743	.	T	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:149,0:.:149:0.00	0/1:174,0:.:174:0.00
+12	109612561	rs10774607	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+9	36237821	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,2:29:3:0.667
+2	180918458	rs7572487	C	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+1	169989999	rs61825347	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+1	53114260	rs6679152	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+19	27750221	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,5:.:2:1.00	0/1:1,0:.:1:0.00
+5	845567	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:3,2:.:5:0.400	0/1:4,2:33:6:0.333
+7	66265028	rs3823609	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+7	142197861	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:61,7:.:68:0.103	0/1:93,0:.:93:0.00
+17	18111868	rs1378602	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:5,4:.:9:0.444	0/1:1,2:36:3:0.667
+22	20490447	rs16984693	T	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+19	50862868	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:171,0:.:171:0.00	0/1:177,3:33:180:0.017
+7	127731618	rs322820	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,6:.:6:1.00	0/1:0,10:35:10:1.00
+4	183676186	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:96,0:.:96:0.00	0/1:69,3:33:72:0.042
+4	168280073	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:34:2:1.00
+14	35775784	rs10151128	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:37:1:1.00
+15	62666506	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+12	133249017	rs5744783	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,22:.:22:1.00	0/1:0,26:33:26:1.00
+1	227172903	rs2297415	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,212:.:212:1.00	0/1:0,210:31:211:1.00
+2	173800195	rs12465032	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:39:2:1.00
+8	139173342	rs11166794	G	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:33:2:1.00
+17	80562265	rs9903168	A	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:32:2:1.00
+3	189640168	rs78863315	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+6	90368385	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:462,47:.:509:0.092	0/1:426,35:14:461:0.076
+1	142910854	.	T	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:2,0:.:2:0.00	0/1:3,2:32:5:0.400
+16	85140956	rs8059088	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,10:.:10:1.00	0/1:0,6:38:6:1.00
+10	26349143	rs76725843	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:37:1:1.00
+5	120655607	rs6887985	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+2	185313512	rs2053563	A	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:37:2:1.00
+8	144941591	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:99,0:.:99:0.00	0/1:113,3:30:116:0.026
+4	190811553	.	T	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:1,1:33:2:0.500
+6	30571362	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:345,0:.:345:0.00	0/1:375,3:36:378:7.937e-03
+8	28980058	.	A	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:23,0:.:23:0.00	0/1:25,3:30:28:0.107
+7	131204708	rs1833493	T	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:33:2:1.00
+17	79980891	rs4444402	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:33:2:1.00
+17	78854223	rs2289759	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:1,81:.:83:0.988	0/1:0,69:35:69:1.00
+17	37826537	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:24,10:.:35:0.294	0/1:16,5:29:21:0.238
+5	176765408	.	C	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:44,5:.:49:0.102	0/1:25,4:12:29:0.138
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+2	132817436	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:30:1:1.00
+1	195937711	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:24:2:1.00
+8	60399853	rs12334319	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+12	62789751	rs11174460	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+15	98960637	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,2:33:3:0.667
+1	26648838	rs11247914	G	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:43,41:.:84:0.488	0/1:54,23:31:77:0.299
+4	164517733	rs6536738	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+17	21289225	rs1320253	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+4	190953224	.	T	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,10:.:10:1.00	0/1:2,0:.:2:0.00
+4	189558023	rs2085934	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:38:2:1.00
+11	116450463	rs61362984	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:35:2:1.00
+7	142162278	rs361443	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:75,44:.:119:0.370	0/1:79,54:33:133:0.406
+16	87622033	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+7	34160246	rs10216122	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:37:1:1.00
+8	22669256	.	C	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:40:1:1.00
+12	46833912	rs4076484	C	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:39:1:1.00
+1	116825441	rs12142801	A	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+8	113507870	rs117582116	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,2:29:3:0.667
+12	25601656	rs10842563	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,1:38:1:1.00
+10	42359971	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:9,1:.:10:0.100	0/1:2,0:.:2:0.00
+6	57247022	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:64,46:.:110:0.418	0/1:41,29:31:71:0.414
+15	97592325	rs234524	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+19	11215750	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:24,0:.:24:0.00	0/1:39,3:29:42:0.071
+9	110896775	rs520093	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+20	26313069	.	G	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:10,0:.:10:0.00	0/1:1,0:.:1:0.00
+2	33918041	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+21	36336641	.	C	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:2,0:.:2:0.00	0/1:0,2:32:2:1.00
+4	49658738	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:3,0:.:3:0.00
+13	53326030	rs116848768	C	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:32:2:1.00
+12	31807329	rs7316528	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:36:2:1.00
+5	157856511	rs2964515	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:37:1:1.00
+Y	59024628	.	A	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:33:1:1.00
+5	140710705	rs2472647	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,390:.:390:1.00	0/1:1,419:33:421:0.998
+9	11197570	rs74962058	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:0,1:39:1:1.00
+9	66463766	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:6,3:37:9:0.333
+3	7865075	rs179051	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:36:2:1.00
+2	90414337	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,3:.:4:0.750	0/1:4,1:39:5:0.200
+7	35591136	rs889938	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+6	12164612	rs1042054	C	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:55,49:.:104:0.471	0/1:74,42:34:116:0.362
+5	98115932	rs2250807	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:30,37:.:67:0.552	0/1:20,24:31:44:0.545
+3	53139507	rs2581774	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:36,23:.:59:0.390	0/1:17,30:36:47:0.638
+17	599811	rs870183	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,3:25:3:1.00
+20	34147998	rs224424	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:2,0:.:2:0.00	0/1:2,3:26:5:0.600
+4	49219198	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:0,1:37:1:1.00
+5	134780704	rs10059928	G	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:39:1:1.00
+21	9828577	.	T	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:1,0:.:1:0.00	0/1:0,1:37:1:1.00
+1	22904857	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,4:.:4:1.00	0/1:2,4:31:6:0.667
+10	42382788	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:150,41:.:180:0.215	0/1:45,2:35:47:0.043
+5	31832957	rs7715166	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:36:2:1.00
+7	143929615	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:455,1:.:456:2.193e-03	0/1:560,5:32:565:8.850e-03
+1	17046525	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:52,11:.:63:0.175	0/1:81,9:29:90:0.100
+6	100042655	rs330822	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:29:2:1.00
+14	89381939	rs8021119	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,3:34:3:1.00
+15	20210111	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:28,0:.:28:0.00	0/1:15,5:32:20:0.250
+2	224338526	.	A	C	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:36:1:1.00
+12	20117463	rs11044956	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:1,2:33:3:0.667
+3	167606233	rs7651386	A	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:24,10:.:34:0.294	0/1:16,2:35:18:0.111
+21	11100587	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:3,0:.:3:0.00	0/1:0,1:38:1:1.00
+9	136657140	.	G	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:12,6:.:18:0.333	0/1:4,7:28:11:0.636
+20	53434950	rs2756955	G	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,3:35:3:1.00
+18	12912544	.	C	A	.	REJECT	.	GT:AD:BQ:DP:FA	0:3,0:.:3:0.00	0/1:2,2:32:4:0.500
+16	58824130	rs11076270	C	T	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:30:2:1.00
+10	95338594	rs7081686	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,2:.:2:1.00	0/1:0,3:35:3:1.00
+2	2061754	rs2568727	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:0,2:37:2:1.00
+3	90458047	.	A	G	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+14	54875514	rs2179896	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,129:.:129:1.00	0/1:1,117:35:118:0.992
+7	5952775	rs116767450	T	A	.	REJECT	DB	GT:AD:BQ:DP:FA	0:6,1:.:7:0.143	0/1:10,7:30:17:0.412
+1	67426487	rs12742428	A	G	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:40:1:1.00
+1	143270561	.	C	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,1:.:1:1.00	0/1:1,1:34:2:0.500
+6	121060536	rs55908530	A	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:37:2:1.00
+8	8010514	rs80097107	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,1:38:1:1.00
+12	25233264	.	G	T	.	REJECT	.	GT:AD:BQ:DP:FA	0:0,0:.:0:0.00	0/1:0,2:33:2:1.00
+11	118967758	rs643788	T	C	.	REJECT	DB	GT:AD:BQ:DP:FA	0:0,103:.:103:1.00	0/1:2,115:32:117:0.983
diff --git a/test_data/test_varscan.vcf b/test_data/test_varscan.vcf
new file mode 100644
index 0000000..f44af38
--- /dev/null
+++ b/test_data/test_varscan.vcf
@@ -0,0 +1,518 @@
+##fileformat=VCFv4.1
+##source=VarScan2
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases">
+##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation">
+##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)">
+##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value">
+##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls">
+##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls">
+##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand">
+##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
+##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)">
+##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)">
+##FORMAT=<ID=FREQ,Number=1,Type=String,Description="Variant allele frequency">
+##FORMAT=<ID=DP4,Number=1,Type=String,Description="Strand read counts: ref/fwd, ref/rev, var/fwd, var/rev">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR
+12	54998038	.	G	A	.	PASS	DP=30;SS=1;SSC=0;GPV=8.4556E-18;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:11:0:11:100%:0,0,0,11	1/1:.:19:0:19:100%:0,0,2,17
+1	6195493	.	G	A	.	PASS	DP=131;SS=1;SSC=5;GPV=6.607E-26;SPV=2.7811E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:59:31:28:47.46%:2,29,2,26	0/1:.:72:33:39:54.17%:1,32,0,39
+2	182394145	.	C	T	.	PASS	DP=36;SS=1;SSC=0;GPV=2.1904E-7;SPV=9.9112E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:9:2:7:77.78%:2,0,7,0	0/1:.:27:16:11:40.74%:16,0,11,0
+9	86284178	.	C	A	.	PASS	DP=378;SS=1;SSC=20;GPV=1E0;SPV=9.1148E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:219:134:85:38.81%:51,83,25,60	0/1:.:159:77:82:51.57%:27,50,30,52
+11	51572123	.	C	G	.	PASS	DP=424;SS=1;SSC=0;GPV=2.2082E-240;SPV=8.4825E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:132:1:130:99.24%:1,0,90,40	1/1:.:292:4:284:98.61%:1,3,185,99
+21	40499498	.	A	G	.	PASS	DP=158;SS=1;SSC=0;GPV=6.6597E-94;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:78:0:78:100%:0,0,75,3	1/1:.:80:0:79:100%:0,0,79,0
+14	105410183	.	T	C	.	PASS	DP=173;SS=1;SSC=2;GPV=6.9928E-32;SPV=5.5256E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:99:51:48:48.48%:30,21,29,19	0/1:.:74:38:36:48.65%:19,19,19,17
+1	179588024	.	T	C	.	PASS	DP=25;SS=1;SSC=1;GPV=1.1933E-4;SPV=7.6919E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:15:8:7:46.67%:0,8,0,7	0/1:.:10:6:4:40%:1,5,1,3
+16	70367494	.	A	C	.	PASS	DP=404;SS=3;SSC=16;GPV=1E0;SPV=2.3243E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:387:306:78:20.31%:267,39,0,78	0/0:.:17:17:0:0%:12,5,0,0
+12	27470682	.	C	T	.	PASS	DP=18;SS=1;SSC=0;GPV=3.8123E-3;SPV=8.3258E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:5:4:44.44%:5,0,4,0	0/1:.:9:6:3:33.33%:6,0,3,0
+11	6913127	.	A	G	.	PASS	DP=608;SS=1;SSC=4;GPV=5.3626E-118;SPV=3.3084E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:299:149:150:50.17%:50,99,63,87	0/1:.:309:147:161:52.27%:47,100,56,105
+8	142229834	.	G	A	.	PASS	DP=68;SS=3;SSC=23;GPV=1E0;SPV=4.2039E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:37:21:16:43.24%:5,16,3,13	1/1:.:31:7:24:77.42%:0,7,2,22
+4	3944026	.	T	G	.	PASS	DP=29;SS=1;SSC=0;GPV=3.3259E-17;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:14:0:14:100%:0,0,13,1	1/1:.:15:0:15:100%:0,0,12,3
+15	21063501	.	C	G	.	PASS	DP=43;SS=1;SSC=0;GPV=1.5066E-25;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:32:0:32:100%:0,0,6,26	1/1:.:11:0:11:100%:0,0,4,7
+7	6475831	.	C	T	.	PASS	DP=87;SS=1;SSC=16;GPV=1E0;SPV=2.229E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:41:24:17:41.46%:24,0,17,0	0/1:.:46:16:30:65.22%:16,0,29,1
+16	88695332	.	G	C	.	PASS	DP=115;SS=1;SSC=0;GPV=4.392E-68;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:0:58:100%:0,0,0,58	1/1:.:57:0:56:100%:0,0,0,56
+19	50001499	.	A	G	.	PASS	DP=33;SS=1;SSC=12;GPV=1.4096E-8;SPV=5.1271E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:7:4:36.36%:0,7,0,4	0/1:.:22:6:16:72.73%:0,6,0,16
+2	219903258	.	T	G	.	PASS	DP=150;SS=1;SSC=3;GPV=6.378E-87;SPV=4.7651E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:71:1:70:98.59%:0,1,22,48	1/1:.:79:0:78:100%:0,0,17,61
+7	131155588	.	G	T	.	PASS	DP=261;SS=1;SSC=0;GPV=1.8401E-36;SPV=9.9755E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:132:68:61:47.29%:61,7,51,10	0/1:.:129:89:40:31.01%:72,17,35,5
+17	22261425	.	A	G	.	PASS	DP=31;SS=1;SSC=2;GPV=6.8754E-17;SPV=5.8065E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,0,13	1/1:.:18:1:17:94.44%:0,1,0,17
+7	51097063	.	T	G	.	PASS	DP=243;SS=1;SSC=0;GPV=1.4022E-142;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:102:0:101:100%:0,0,44,57	1/1:.:141:0:137:100%:0,0,53,84
+9	137020431	.	A	G	.	PASS	DP=28;SS=1;SSC=0;GPV=1.4422E-4;SPV=9.6903E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:6:7:53.85%:6,0,6,1	0/1:.:15:11:4:26.67%:10,1,2,2
+22	18082669	.	A	G	.	PASS	DP=23;SS=3;SSC=33;GPV=1E0;SPV=4.8948E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:3:7:70%:2,1,6,1	0/0:.:13:13:0:0%:11,2,0,0
+9	38933593	.	C	T	.	PASS	DP=32;SOMATIC;SS=2;SSC=18;GPV=1E0;SPV=1.3657E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:15:15:0:0%:15,0,0,0	0/1:.:17:11:6:35.29%:10,1,6,0
+20	15480548	.	T	A	.	PASS	DP=143;SS=1;SSC=4;GPV=3.1933E-22;SPV=3.8722E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:58:35:23:39.66%:0,35,0,23	0/1:.:85:48:37:43.53%:2,46,0,37
+7	128073720	.	G	A	.	PASS	DP=23;SS=1;SSC=0;GPV=7.4178E-7;SPV=9.6227E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:1:6:85.71%:0,1,1,5	0/1:.:15:6:9:60%:0,6,0,9
+1	200619530	.	T	C	.	PASS	DP=66;SS=1;SSC=0;GPV=2.6498E-39;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:31:0:31:100%:0,0,27,4	1/1:.:35:0:35:100%:0,0,26,9
+14	50066796	.	T	A	.	PASS	DP=249;SS=3;SSC=98;GPV=1E0;SPV=1.5786E-10	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:136:74:62:45.59%:64,10,53,9	1/1:.:113:18:95:84.07%:15,3,85,10
+4	68266011	.	C	G	.	PASS	DP=36;SS=1;SSC=8;GPV=1.5744E-10;SPV=1.4123E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:15:7:8:53.33%:2,5,1,7	1/1:.:21:5:16:76.19%:1,4,2,14
+6	4979405	.	T	C	.	PASS	DP=84;SS=1;SSC=0;GPV=2.3594E-19;SPV=9.5373E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:38:13:25:65.79%:10,3,13,12	0/1:.:46:23:23:50%:19,4,18,5
+11	89896041	.	A	G	.	PASS	DP=63;SS=1;SSC=0;GPV=9.9942E-16;SPV=9.5065E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:32:10:22:68.75%:10,0,22,0	0/1:.:31:15:16:51.61%:15,0,16,0
+3	8955389	.	C	T	.	PASS	DP=197;SS=1;SSC=4;GPV=3.9025E-27;SPV=3.5845E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:97:61:35:36.46%:19,42,8,27	0/1:.:100:60:40:40%:17,43,12,28
+6	33145710	.	A	G	.	PASS	DP=58;SS=1;SSC=0;GPV=4.8441E-11;SPV=9.1987E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:5:8:61.54%:4,1,4,4	0/1:.:45:25:20:44.44%:20,5,18,2
+2	228855866	.	G	C	.	PASS	DP=258;SS=1;SSC=0;GPV=4.6532E-43;SPV=9.2951E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:125:63:62:49.6%:34,29,35,27	0/1:.:133:77:54:41.22%:35,42,27,27
+1	201840464	.	T	C	.	PASS	DP=449;SS=1;SSC=0;GPV=7.1033E-269;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:120:0:119:100%:0,0,10,109	1/1:.:329:0:329:100%:0,0,24,305
+14	65032226	.	C	T	.	PASS	DP=59;SS=1;SSC=0;GPV=1.6283E-34;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:35:0:34:100%:0,0,0,34	1/1:.:24:0:24:100%:0,0,6,18
+17	33770802	.	C	T	.	PASS	DP=534;SS=3;SSC=179;GPV=1E0;SPV=1.2254E-18	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:384:221:163:42.45%:127,94,95,68	1/1:.:150:25:125:83.33%:14,11,80,45
+20	20168497	.	A	G	.	PASS	DP=183;SS=1;SSC=1;GPV=3.0219E-43;SPV=6.6136E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:90:36:54:60%:33,3,54,0	0/1:.:93:39:54:58.06%:38,1,53,1
+2	197873563	.	T	C	.	PASS	DP=104;SS=1;SSC=0;GPV=6.9709E-61;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:45:0:45:100%:0,0,44,1	1/1:.:59:0:57:100%:0,0,57,0
+12	65462429	.	ATGTG	A	.	PASS	DP=33;SS=1;SSC=2;GPV=4.1251E-4;SPV=5.0308E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:18:12:5:29.41%:12,0,4,1	0/1:.:15:9:5:35.71%:9,0,5,0
+4	104493370	.	G	A	.	PASS	DP=96;SS=1;SSC=0;GPV=2.7702E-57;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:62:0:62:100%:0,0,36,26	1/1:.:34:0:34:100%:0,0,24,10
+7	57069935	.	G	C	.	PASS	DP=29;SS=1;SSC=0;GPV=3.3259E-17;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:10:0:10:100%:0,0,0,10	1/1:.:19:0:19:100%:0,0,1,18
+16	19505852	.	C	T	.	PASS	DP=24;SS=1;SSC=0;GPV=1.1047E-4;SPV=9.8863E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:15:6:9:60%:0,6,0,9	0/1:.:9:7:2:22.22%:0,7,0,2
+10	42380921	.	T	A	.	PASS	DP=19;SOMATIC;SS=2;SSC=10;GPV=1E0;SPV=8.6687E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:10:10:0:0%:0,10,0,0	0/1:.:9:6:3:33.33%:0,6,0,3
+4	44287388	.	T	A	.	PASS	DP=20;SS=1;SSC=0;GPV=7.2544E-12;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:0:12:100%:0,0,4,8	1/1:.:8:0:8:100%:0,0,0,8
+17	16725338	.	T	C	.	PASS	DP=272;SS=1;SSC=0;GPV=8.0958E-162;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:140:0:138:100%:0,0,123,15	1/1:.:132:0:132:100%:0,0,123,9
+1	189959989	.	C	T	.	PASS	DP=107;SS=1;SSC=0;GPV=6.7911E-24;SPV=9.9846E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:74:26:48:64.86%:9,17,22,26	0/1:.:33:21:12:36.36%:7,14,4,8
+1	156641537	.	C	T	.	PASS	DP=91;SS=1;SSC=0;GPV=1.0988E-53;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:38:0:38:100%:0,0,15,23	1/1:.:53:0:52:100%:0,0,22,30
+7	94041937	.	A	C	.	PASS	DP=260;SS=1;SSC=12;GPV=2.9423E-44;SPV=5.9428E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:124:74:50:40.32%:40,34,31,19	0/1:.:136:67:69:50.74%:33,34,38,31
+17	45235583	.	A	C	.	PASS	DP=360;SOMATIC;SS=2;SSC=129;GPV=1E0;SPV=1.1481E-13	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:196:160:35:17.95%:100,60,28,7	0/1:.:164:73:90:55.21%:42,31,64,26
+17	39139729	.	C	T	.	PASS	DP=45;SS=1;SSC=8;GPV=5.1233E-13;SPV=1.4119E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:33:13:20:60.61%:3,10,11,9	1/1:.:12:2:10:83.33%:2,0,3,7
+17	55917353	.	C	G	.	PASS	DP=137;SS=3;SSC=93;GPV=1E0;SPV=4.3012E-10	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:52:25:27:51.92%:1,24,1,26	1/1:.:85:3:82:96.47%:0,3,5,77
+7	90155026	.	T	A	.	PASS	DP=54;SS=1;SSC=2;GPV=6.1952E-29;SPV=5.3459E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:17:1:16:94.12%:1,0,0,16	1/1:.:37:1:36:97.3%:0,1,9,27
+21	9927109	.	G	C	.	PASS	DP=43;SS=1;SSC=5;GPV=2.3512E-4;SPV=2.8427E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:32:25:7:21.88%:18,7,3,4	0/1:.:11:7:4:36.36%:2,5,3,1
+19	57839150	.	A	G	.	PASS	DP=282;SS=1;SSC=3;GPV=3.4972E-164;SPV=4.8201E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:147:0:144:100%:0,0,59,85	1/1:.:135:1:133:99.25%:0,1,45,88
+1	146215223	.	G	C	.	PASS	DP=886;SS=1;SSC=3;GPV=7.4361E-199;SPV=4.7339E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:414:176:235:57.18%:75,101,73,162	0/1:.:472:200:272:57.63%:104,96,62,210
+8	74189562	.	T	C	.	PASS	DP=86;SS=1;SSC=0;GPV=2.7498E-51;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:46:0:46:100%:0,0,46,0	1/1:.:40:0:40:100%:0,0,39,1
+1	212588190	.	C	A	.	PASS	DP=29;SS=1;SSC=9;GPV=7.6888E-8;SPV=1.1372E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:7:6:46.15%:0,7,0,6	1/1:.:16:4:12:75%:0,4,0,12
+7	156981672	.	A	G	.	PASS	DP=76;SS=1;SSC=0;GPV=1.0773E-44;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:29:0:28:100%:0,0,14,14	1/1:.:47:0:47:100%:0,0,19,28
+9	114371322	.	T	A	.	PASS	DP=302;SS=1;SSC=0;GPV=1.8535E-180;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:71:0:71:100%:0,0,59,12	1/1:.:231:0:230:100%:0,0,180,50
+15	34156284	.	C	G	.	PASS	DP=37;SS=1;SSC=0;GPV=5.7269E-22;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:20:0:20:100%:0,0,20,0	1/1:.:17:0:17:100%:0,0,16,1
+5	134051541	.	TA	T	.	PASS	DP=27;SS=1;SSC=1;GPV=4.4505E-3;SPV=7.322E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:16:8:4:33.33%:8,0,4,0	0/1:.:11:7:3:30%:7,0,3,0
+12	15035081	.	T	C	.	PASS	DP=627;SS=1;SSC=3;GPV=0E0;SPV=4.8678E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:308:2:305:99.35%:2,0,286,19	1/1:.:319:1:317:99.69%:1,0,300,17
+9	132636031	.	A	G	.	PASS	DP=33;SS=1;SSC=0;GPV=1.3852E-19;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:25:0:25:100%:0,0,10,15	1/1:.:8:0:8:100%:0,0,1,7
+5	168874289	.	G	A	.	PASS	DP=30;SS=3;SSC=13;GPV=1E0;SPV=4.5694E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:13:6:31.58%:0,13,0,6	0/0:.:11:11:0:0%:0,11,0,0
+4	25666099	.	A	G	.	PASS	DP=57;SS=1;SSC=0;GPV=4.883E-13;SPV=8.987E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:20:7:13:65%:0,7,0,13	0/1:.:37:18:19:51.35%:0,18,0,19
+17	25969240	.	A	G	.	PASS	DP=25;SS=1;SSC=0;GPV=7.9107E-15;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:10:0:10:100%:0,0,10,0	1/1:.:15:0:15:100%:0,0,15,0
+19	6731267	.	G	A	.	PASS	DP=155;SS=1;SSC=0;GPV=4.5651E-17;SPV=8.8019E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:71:46:25:35.21%:13,33,6,19	0/1:.:84:60:23:27.71%:16,44,3,20
+17	1680192	.	A	T	.	PASS	DP=48;SS=1;SSC=0;GPV=2.6363E-8;SPV=8.6378E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:12:5:6:54.55%:5,0,3,3	0/1:.:36:21:15:41.67%:16,5,10,5
+1	57378150	.	C	T	.	PASS	DP=467;SS=1;SSC=3;GPV=1.825E-76;SPV=5.0096E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:248:137:110:44.53%:90,47,76,34	0/1:.:219:120:98:44.95%:93,27,69,29
+10	29840164	.	A	G	.	PASS	DP=170;SS=3;SSC=118;GPV=1E0;SPV=1.2674E-12	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:108:68:39:36.45%:9,59,7,32	1/1:.:62:6:56:90.32%:0,6,8,48
+12	80014907	.	A	C	.	PASS	DP=1049;SS=1;SSC=0;GPV=2.5341E-176;SPV=9.6438E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:544:278:262:48.52%:119,159,114,148	0/1:.:505:286:217:43.14%:146,140,91,126
+MT	9548	.	G	A	.	PASS	DP=92;SS=1;SSC=0;GPV=2.7621E-54;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:34:0:33:100%:0,0,18,15	1/1:.:58:0:58:100%:0,0,33,25
+7	72302078	.	G	T	.	PASS	DP=46;SOMATIC;SS=2;SSC=16;GPV=1E0;SPV=2.3979E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:32:32:0:0%:31,1,0,0	0/1:.:14:11:3:21.43%:11,0,3,0
+10	91066460	.	T	A	.	PASS	DP=934;SS=1;SSC=3;GPV=0E0;SPV=4.2582E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:610:2:607:99.67%:2,0,331,276	1/1:.:324:0:324:100%:0,0,183,141
+1	64644301	.	C	A	.	PASS	DP=90;SOMATIC;SS=2;SSC=19;GPV=1E0;SPV=1.1218E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:76:75:1:1.32%:35,40,0,1	0/1:.:14:11:3:21.43%:10,1,3,0
+2	71838597	.	C	A	.	PASS	DP=304;SS=1;SSC=4;GPV=1.1323E-50;SPV=3.3518E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:145:82:63:43.45%:49,33,45,18	0/1:.:159:85:74:46.54%:55,30,45,29
+19	45495682	.	A	G	.	PASS	DP=651;SS=1;SSC=0;GPV=2.6112E-117;SPV=9.2914E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:299:145:153:51.34%:4,141,4,149	0/1:.:352:190:161:45.87%:3,187,5,156
+1	155029253	.	A	C	.	PASS	DP=87;SS=1;SSC=4;GPV=7.1095E-15;SPV=3.2954E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:48:28:20:41.67%:28,0,20,0	0/1:.:39:20:19:48.72%:20,0,19,0
+1	201285909	.	A	G	.	PASS	DP=52;SS=1;SSC=0;GPV=6.3169E-31;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:26:0:26:100%:0,0,0,26	1/1:.:26:0:26:100%:0,0,0,26
+6	109190267	.	A	T	.	PASS	DP=164;SS=1;SSC=3;GPV=4.6926E-30;SPV=4.5396E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:94:48:44:47.83%:9,39,3,41	0/1:.:70:35:35:50%:5,30,3,32
+3	189712126	.	A	C	.	PASS	DP=144;SS=1;SSC=0;GPV=6.5577E-21;SPV=9.5933E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:31:15:16:51.61%:0,15,0,16	0/1:.:113:72:41:36.28%:6,66,1,40
+6	32714222	.	T	G	.	PASS	DP=225;SOMATIC;SS=2;SSC=15;GPV=1E0;SPV=2.6397E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:83:74:9:10.84%:9,65,0,9	0/1:.:142:111:31:21.83%:8,103,0,31
+1	109486240	.	TA	T	.	PASS	DP=428;SS=1;SSC=0;GPV=1.2176E-47;SPV=9.6731E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:218:139:78:35.94%:28,111,18,60	0/1:.:210:151:59:28.1%:42,109,15,44
+20	47713063	.	C	T	.	PASS	DP=101;SS=1;SSC=0;GPV=1.7697E-14;SPV=9.8672E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:49:25:24:48.98%:0,25,1,23	0/1:.:52:36:15:29.41%:0,36,0,15
+3	125535191	.	A	G	.	PASS	DP=28;SS=1;SSC=0;GPV=1.3074E-16;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:18:0:18:100%:0,0,0,18	1/1:.:10:0:10:100%:0,0,0,10
+10	133967539	.	C	G	.	PASS	DP=23;SS=5;SSC=0;GPV=1E0;SPV=2.6922E-4	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:3:9:75%:0,3,0,9	0/0:.:11:11:0:0%:0,11,0,0
+2	133019766	.	G	A	.	PASS	DP=4601;SS=1;SSC=6;GPV=0E0;SPV=2.1683E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:2468:390:2067:84.13%:253,137,1143,924	1/1:.:2133:319:1809:85.01%:176,143,983,826
+11	21305927	.	T	C	.	PASS	DP=36;SS=1;SSC=0;GPV=2.2598E-21;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:24:0:24:100%:0,0,6,18	1/1:.:12:0:12:100%:0,0,5,7
+2	15537866	.	C	A	.	PASS	DP=33;SS=1;SSC=0;GPV=1.3852E-19;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:23:0:23:100%:0,0,0,23	1/1:.:10:0:10:100%:0,0,0,10
+4	110384790	.	A	G	.	PASS	DP=331;SS=3;SSC=88;GPV=1E0;SPV=1.5554E-9	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:181:86:95:52.49%:20,66,17,78	1/1:.:150:25:125:83.33%:8,17,39,86
+11	61569830	.	C	T	.	PASS	DP=172;SS=1;SSC=0;GPV=6.9481E-34;SPV=8.6456E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:99:45:54:54.55%:43,2,45,9	0/1:.:73:38:34:47.22%:35,3,34,0
+1	95369211	.	T	G	.	PASS	DP=111;SS=1;SSC=0;GPV=2.7737E-66;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:75:0:75:100%:0,0,0,75	1/1:.:36:0:36:100%:0,0,0,36
+1	67105207	.	T	A	.	PASS	DP=64;SS=1;SSC=7;GPV=1.1758E-13;SPV=1.8554E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:32:17:15:46.88%:17,0,12,3	0/1:.:32:12:19:61.29%:11,1,19,0
+7	36763560	.	C	T	.	PASS	DP=124;SS=1;SSC=0;GPV=4.368E-74;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:69:0:69:100%:0,0,69,0	1/1:.:55:0:55:100%:0,0,53,2
+Y	10029466	.	T	G	.	PASS	DP=21;SS=1;SSC=0;GPV=1.8578E-12;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:0:12:100%:0,0,12,0	1/1:.:9:0:9:100%:0,0,8,1
+9	17143511	.	A	AG	.	PASS	DP=31;SS=1;SSC=1;GPV=6.5329E-5;SPV=6.5251E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:18:11:7:38.89%:0,11,0,7	0/1:.:13:8:5:38.46%:0,8,0,5
+1	114196495	.	A	G	.	PASS	DP=1169;SS=1;SSC=44;GPV=1E0;SPV=3.9704E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:529:294:235:44.42%:275,19,216,19	0/1:.:640:280:359:56.18%:259,21,328,31
+8	120602908	.	C	T	.	PASS	DP=184;SS=1;SSC=0;GPV=4.0017E-110;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:68:0:68:100%:0,0,2,66	1/1:.:116:0:116:100%:0,0,4,112
+10	108389249	.	T	C	.	PASS	DP=17;SS=1;SSC=0;GPV=4.2852E-10;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:0:8:100%:0,0,0,8	1/1:.:9:0:9:100%:0,0,0,9
+19	56565233	.	A	T	.	PASS	DP=156;SS=1;SSC=0;GPV=2.6554E-93;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:62:0:62:100%:0,0,5,57	1/1:.:94:0:94:100%:0,0,5,89
+22	17586609	.	GT	G	.	PASS	DP=60;SOMATIC;SS=2;SSC=24;GPV=1E0;SPV=3.2406E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:30:11:0:0%:0,11,0,0	0/1:.:30:12:12:50%:1,11,0,12
+18	32963796	.	C	T	.	PASS	DP=25;SS=1;SSC=1;GPV=1.4654E-5;SPV=7.2281E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:6:7:53.85%:6,0,7,0	0/1:.:12:6:6:50%:6,0,6,0
+15	49293194	.	C	A	.	PASS	DP=593;SS=1;SSC=0;GPV=4.8793E-82;SPV=9.8898E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:286:162:124:43.36%:68,94,44,80	0/1:.:307:201:106:34.53%:78,123,44,62
+12	121773552	.	T	C	.	PASS	DP=146;SS=1;SSC=0;GPV=2.6938E-87;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:81:0:81:100%:0,0,11,70	1/1:.:65:0:65:100%:0,0,11,54
+8	1337482	.	C	CG	.	PASS	DP=18;SS=1;SSC=11;GPV=5.1645E-4;SPV=7.6717E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:7:3:30%:2,5,0,3	1/1:.:8:2:6:75%:0,2,0,6
+1	233785786	.	A	C	.	PASS	DP=973;SS=1;SSC=2;GPV=5.2917E-140;SPV=6.0267E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:576:342:233:40.52%:72,270,57,176	0/1:.:397:238:158:39.9%:60,178,42,116
+5	179153797	.	C	T	.	PASS	DP=97;SS=3;SSC=76;GPV=1E0;SPV=2.106E-8	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:42:24:18:42.86%:3,21,2,16	0/0:.:55:55:0:0%:10,45,0,0
+X	2632482	.	C	T	.	PASS	DP=1006;SS=3;SSC=130;GPV=1E0;SPV=9.9463E-14	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:914:534:377:41.38%:357,177,268,109	0/0:.:92:85:5:5.56%:61,24,3,2
+8	134062983	.	C	T	.	PASS	DP=83;SS=1;SSC=3;GPV=5.0311E-18;SPV=4.7018E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:39:18:21:53.85%:17,1,21,0	0/1:.:44:18:24:57.14%:18,0,23,1
+10	3190298	.	C	T	.	PASS	DP=225;SS=1;SSC=0;GPV=9.1498E-135;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:112:0:112:100%:0,0,71,41	1/1:.:113:0:113:100%:0,0,64,49
+X	100662921	.	C	T	.	PASS	DP=129;SS=1;SSC=0;GPV=1.7335E-76;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:61:0:60:100%:0,0,0,60	1/1:.:68:0:68:100%:0,0,2,66
+22	23101559	.	G	T	.	PASS	DP=1252;SS=1;SSC=0;GPV=1.7131E-295;SPV=8.4125E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:575:223:350:61.08%:74,149,136,214	0/1:.:677:280:394:58.46%:98,182,153,241
+15	31210651	.	A	G	.	PASS	DP=40;SS=1;SSC=0;GPV=3.6742E-23;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:0:12:100%:0,0,0,12	1/1:.:28:0:27:100%:0,0,0,27
+1	161518159	.	C	T	.	PASS	DP=537;SS=1;SSC=0;GPV=2.2649E-43;SPV=9.8407E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:338:247:91:26.92%:220,27,87,4	0/1:.:199:160:38:19.19%:160,0,38,0
+12	76509736	.	T	C	.	PASS	DP=150;SS=1;SSC=2;GPV=3.5303E-24;SPV=5.0468E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:68:39:29:42.65%:12,27,9,20	0/1:.:82:46:36:43.9%:17,29,15,21
+9	139617662	.	T	C	.	PASS	DP=53;SS=1;SSC=1;GPV=2.72E-12;SPV=7.6607E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:34:14:20:58.82%:5,9,5,15	0/1:.:19:9:10:52.63%:5,4,4,6
+21	45959195	.	G	A	.	PASS	DP=53;SS=1;SSC=0;GPV=6.3169E-31;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:30:0:29:100%:0,0,18,11	1/1:.:23:0:23:100%:0,0,14,9
+2	41384390	.	G	A	.	PASS	DP=68;SS=1;SSC=0;GPV=1.2642E-8;SPV=8.5006E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:31:19:12:38.71%:5,14,4,8	0/1:.:37:26:11:29.73%:14,12,7,4
+2	7027323	.	T	A	.	PASS	DP=83;SS=1;SSC=4;GPV=6.1724E-46;SPV=3.1766E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:36:0:36:100%:0,0,0,36	1/1:.:47:2:45:95.74%:0,2,0,45
+7	83098749	.	G	A	.	PASS	DP=68;SS=1;SSC=0;GPV=1.6809E-40;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:37:0:37:100%:0,0,0,37	1/1:.:31:0:31:100%:0,0,0,31
+6	71063408	.	G	T	.	PASS	DP=35;SOMATIC;SS=2;SSC=42;GPV=1E0;SPV=6.0385E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:16:16:0:0%:2,14,0,0	0/1:.:19:7:12:63.16%:0,7,1,11
+8	19682261	.	T	C	.	PASS	DP=46;SS=1;SSC=0;GPV=2.4256E-8;SPV=8.3473E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:26:13:13:50%:13,0,13,0	0/1:.:20:12:8:40%:11,1,8,0
+4	69382863	.	C	A	.	PASS	DP=69;SS=1;SSC=0;GPV=4.3774E-11;SPV=9.8805E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:24:10:14:58.33%:10,0,14,0	0/1:.:45:30:15:33.33%:26,4,14,1
+11	5068661	.	A	G	.	PASS	DP=603;SS=1;SSC=48;GPV=1E0;SPV=1.4785E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:337:213:124:36.8%:30,183,12,112	0/1:.:266:122:144:54.14%:12,110,14,130
+2	228135631	.	C	T	.	PASS	DP=186;SS=1;SSC=0;GPV=2.5146E-111;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:115:0:115:100%:0,0,48,67	1/1:.:71:0:71:100%:0,0,23,48
+18	15323276	.	A	T	.	PASS	DP=70;SS=1;SSC=0;GPV=3.3578E-8;SPV=9.4448E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:24:14:10:41.67%:12,2,6,4	0/1:.:46:34:12:26.09%:34,0,9,3
+19	9005616	.	G	T	.	PASS	DP=856;SOMATIC;SS=2;SSC=17;GPV=1E0;SPV=1.6616E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:432:372:57:13.29%:123,249,10,47	0/1:.:424:344:80:18.87%:122,222,17,63
+7	40087752	.	A	G	.	PASS	DP=66;SS=1;SSC=0;GPV=2.6498E-39;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:47:0:47:100%:0,0,0,47	1/1:.:19:0:19:100%:0,0,0,19
+19	33106387	.	C	G	.	PASS	DP=50;SS=1;SSC=5;GPV=1.2104E-8;SPV=3.0798E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:12:7:36.84%:12,0,7,0	0/1:.:31:16:15:48.39%:16,0,14,1
+17	12013608	.	C	T	.	PASS	DP=81;SS=1;SSC=0;GPV=4.0755E-15;SPV=8.9133E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:65:32:33:50.77%:32,0,32,1	0/1:.:16:10:6:37.5%:10,0,6,0
+7	150719923	.	TA	T	.	PASS	DP=23;SS=1;SSC=6;GPV=7.4174E-4;SPV=2.468E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:8:3:27.27%:8,0,3,0	0/1:.:12:6:6:50%:6,0,6,0
+10	28193032	.	C	T	.	PASS	DP=95;SS=1;SSC=0;GPV=4.8319E-9;SPV=8.7687E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:7:4:36.36%:7,0,4,0	0/1:.:84:63:21:25%:60,3,21,0
+6	7845244	.	C	T	.	PASS	DP=40;SS=1;SSC=7;GPV=1.1326E-7;SPV=1.7499E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:21:13:8:38.1%:13,0,8,0	0/1:.:19:8:11:57.89%:8,0,11,0
+1	47130873	.	A	G	.	PASS	DP=65;SS=1;SSC=0;GPV=1.0519E-38;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:17:0:17:100%:0,0,15,2	1/1:.:48:0:48:100%:0,0,38,10
+8	103299879	.	G	A	.	PASS	DP=115;SS=1;SSC=2;GPV=5.0508E-66;SPV=5.5263E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:64:1:62:98.41%:0,1,1,61	1/1:.:51:0:51:100%:0,0,1,50
+16	33372694	.	T	C	.	PASS	DP=190;SS=1;SSC=5;GPV=5.0504E-17;SPV=2.5369E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:95:73:22:23.16%:61,12,19,3	0/1:.:95:68:27:28.42%:56,12,22,5
+12	52789605	.	T	A	.	PASS	DP=119;SS=1;SSC=0;GPV=1.7454E-70;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:36:0:36:100%:0,0,16,20	1/1:.:83:0:82:100%:0,0,43,39
+18	107668	.	T	C	.	PASS	DP=28;SS=1;SSC=8;GPV=1.7241E-6;SPV=1.5041E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:6:4:40%:3,3,2,2	0/1:.:18:5:11:68.75%:3,2,5,6
+17	22260051	.	C	G	.	PASS	DP=51;SS=1;SSC=0;GPV=2.5024E-30;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:27:0:27:100%:0,0,26,1	1/1:.:24:0:24:100%:0,0,24,0
+2	220404381	.	A	G	.	PASS	DP=343;SS=1;SSC=0;GPV=1.6586E-201;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:167:0:164:100%:0,0,26,138	1/1:.:176:0:172:100%:0,0,34,138
+6	31349819	.	C	A	.	PASS	DP=114;SS=1;SSC=3;GPV=6.0734E-24;SPV=5E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:57:27:30:52.63%:21,6,23,7	0/1:.:57:26:31:54.39%:19,7,25,6
+1	205031116	.	C	T	.	PASS	DP=48;SS=1;SSC=12;GPV=2.8521E-8;SPV=6.0009E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:16:12:4:25%:6,6,1,3	0/1:.:32:15:17:53.12%:7,8,5,12
+2	25656880	.	C	G	.	PASS	DP=520;SS=1;SSC=3;GPV=2.844E-308;SPV=4.0541E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:310:0:308:100%:0,0,25,283	1/1:.:210:1:209:99.52%:0,1,25,184
+3	179469995	.	A	G	.	PASS	DP=220;SS=1;SSC=0;GPV=3.8839E-31;SPV=8.0778E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:78:45:33:42.31%:45,0,33,0	0/1:.:142:89:53:37.32%:89,0,53,0
+1	228464267	.	G	T	.	PASS	DP=77;SS=1;SSC=3;GPV=7.8163E-15;SPV=4.6842E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:52:27:25:48.08%:5,22,4,21	0/1:.:25:12:13:52%:3,9,2,11
+16	87748198	.	G	C	.	PASS	DP=30;SS=1;SSC=0;GPV=8.4556E-18;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,2,11	1/1:.:17:0:17:100%:0,0,2,15
+15	23485837	.	G	A	.	PASS	DP=65;SS=1;SSC=0;GPV=2.2923E-6;SPV=9.1329E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:43:30:13:30.23%:18,12,7,6	0/1:.:22:18:4:18.18%:10,8,3,1
+4	49641057	.	T	G	.	PASS	DP=37;SS=1;SSC=4;GPV=7.6466E-6;SPV=3.8328E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:5:3:37.5%:3,2,2,1	0/1:.:28:10:11:52.38%:6,4,7,4
+1	248617173	.	A	G	.	PASS	DP=86;SS=3;SSC=79;GPV=1E0;SPV=1.2386E-8	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:64:42:22:34.38%:2,40,0,22	1/1:.:22:0:22:100%:0,0,0,22
+22	42522613	.	G	C	.	PASS	DP=305;SS=1;SSC=0;GPV=1.8535E-180;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:156:0:155:100%:0,0,60,95	1/1:.:149:0:146:100%:0,0,50,96
+14	76045858	.	G	A	.	PASS	DP=435;SS=1;SSC=2;GPV=5.4278E-72;SPV=5.8722E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:227:121:102:45.74%:42,79,31,71	0/1:.:208:113:93:45.15%:44,69,36,57
+5	89993045	.	T	C	.	PASS	DP=188;SS=1;SSC=10;GPV=1.4196E-33;SPV=8.771E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:99:57:42:42.42%:1,56,0,42	0/1:.:89:41:47:53.41%:0,41,0,47
+7	56149939	.	G	A	.	PASS	DP=3080;SS=3;SSC=255;GPV=1E0;SPV=1.3021E-84	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:168:73:94:56.29%:9,64,24,70	0/0:.:2912:2825:76:2.62%:510,2315,18,58
+4	9387254	.	AT	A	.	PASS	DP=72;SS=1;SSC=6;GPV=1.0127E-26;SPV=2.3368E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:39:8:28:77.78%:8,0,28,0	1/1:.:33:4:28:87.5%:4,0,28,0
+9	66820162	.	T	A	.	PASS	DP=35;SS=1;SSC=1;GPV=1.637E-6;SPV=7.768E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:14:7:7:50%:6,1,7,0	0/1:.:21:12:9:42.86%:11,1,9,0
+4	24531539	.	G	A	.	PASS	DP=75;SS=1;SSC=0;GPV=5.5248E-15;SPV=9.4676E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:43:18:25:58.14%:0,18,0,25	0/1:.:32:18:13:41.94%:0,18,0,13
+Y	13651343	.	C	G	.	PASS	DP=64;SS=1;SSC=0;GPV=3.6448E-13;SPV=9.8899E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:8:17:68%:8,0,16,1	0/1:.:39:22:16:42.11%:15,7,14,2
+19	19756662	.	T	C	.	PASS	DP=518;SS=1;SSC=25;GPV=1E0;SPV=2.8111E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:264:141:122:46.39%:135,6,119,3	0/1:.:254:103:148:58.96%:100,3,145,3
+9	111755264	.	G	A	.	PASS	DP=54;SS=1;SSC=10;GPV=2.7171E-10;SPV=8.9064E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:29:18:11:37.93%:0,18,0,11	0/1:.:25:10:15:60%:0,10,0,15
+2	25062634	.	A	G	.	PASS	DP=21;SS=1;SSC=0;GPV=1.8578E-12;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:11:0:11:100%:0,0,11,0	1/1:.:10:0:10:100%:0,0,10,0
+10	81270173	.	A	G	.	PASS	DP=16;SS=1;SSC=3;GPV=2.1691E-2;SPV=5E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:8:6:2:25%:4,2,2,0	0/1:.:8:5:3:37.5%:4,1,2,1
+17	2651341	.	G	T	.	PASS	DP=33;SS=1;SSC=2;GPV=2.8029E-5;SPV=6.1042E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:8:5:38.46%:8,0,5,0	0/1:.:20:12:8:40%:12,0,8,0
+15	102292601	.	C	G	.	PASS	DP=49;SS=1;SSC=3;GPV=6.4857E-20;SPV=4.2348E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:32:6:26:81.25%:6,0,26,0	1/1:.:17:2:15:88.24%:2,0,14,1
+16	32487198	.	C	G	.	PASS	DP=37;SS=1;SSC=0;GPV=2.5665E-9;SPV=8.5997E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:20:7:13:65%:1,6,0,13	0/1:.:17:8:9:52.94%:0,8,0,9
+2	113875631	.	T	C	.	PASS	DP=1374;SS=1;SSC=0;GPV=1.9255E-211;SPV=9.9665E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:549:289:258:47.17%:75,214,56,202	0/1:.:825:491:326:39.9%:140,351,81,245
+12	30822240	.	C	A	.	PASS	DP=145;SS=1;SSC=0;GPV=1.9605E-19;SPV=8.8345E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:71:38:29:43.28%:0,38,2,27	0/1:.:74:45:24:34.78%:0,45,0,24
+1	93316543	.	T	A	.	PASS	DP=29;SOMATIC;SS=2;SSC=14;GPV=1E0;SPV=3.2841E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:19:19:0:0%:3,16,0,0	0/1:.:10:7:3:30%:0,7,0,3
+1	43803633	.	C	A	.	PASS	DP=86;SOMATIC;SS=2;SSC=37;GPV=1E0;SPV=1.7768E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:69:69:0:0%:52,17,0,0	0/1:.:17:12:5:29.41%:12,0,5,0
+12	6428116	.	T	G	.	PASS	DP=113;SS=1;SSC=2;GPV=4.1389E-21;SPV=5.2867E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:52:27:25:48.08%:12,15,10,15	0/1:.:61:31:30:49.18%:15,16,12,18
+11	58117242	.	A	C	.	PASS	DP=251;SS=1;SSC=0;GPV=7.1645E-53;SPV=9.9866E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:130:48:82:63.08%:16,32,24,58	0/1:.:121:66:54:45%:19,47,16,38
+4	65165660	.	C	T	.	PASS	DP=208;SS=3;SSC=44;GPV=1E0;SPV=3.8162E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:122:67:53:44.17%:63,4,49,4	0/0:.:86:71:15:17.44%:59,12,13,2
+1	112269872	.	G	A	.	PASS	DP=575;SS=1;SSC=0;GPV=0E0;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:225:0:225:100%:0,0,121,104	1/1:.:350:0:349:100%:0,0,228,121
+9	75544038	.	A	T	.	PASS	DP=29;SS=1;SSC=3;GPV=1.5195E-4;SPV=4.4208E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:15:10:5:33.33%:0,10,0,5	0/1:.:14:8:6:42.86%:0,8,0,6
+9	66825522	.	A	C	.	PASS	DP=89;SOMATIC;SS=2;SSC=30;GPV=1E0;SPV=8.9887E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:31:29:2:6.45%:6,23,1,1	0/1:.:58:36:22:37.93%:10,26,11,11
+10	70051810	.	A	G	.	PASS	DP=187;SS=1;SSC=3;GPV=4.7023E-109;SPV=4.2473E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:80:1:78:98.73%:0,1,24,54	1/1:.:107:0:107:100%:0,0,38,69
+19	43439694	.	A	G	.	PASS	DP=5006;SS=1;SSC=240;GPV=1E0;SPV=8.4051E-25	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:2034:1010:1022:50.3%:377,633,378,644	0/1:.:2972:1044:1924:64.82%:348,696,672,1252
+1	21755055	.	C	A	.	PASS	DP=134;SS=1;SSC=1;GPV=1.473E-10;SPV=6.4625E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:79:60:18:23.08%:29,31,3,15	0/1:.:55:43:12:21.82%:24,19,2,10
+7	38634760	.	C	T	.	PASS	DP=29;SS=1;SSC=1;GPV=5.1054E-3;SPV=7.505E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:12:8:3:27.27%:3,5,1,2	0/1:.:17:13:4:23.53%:7,6,2,2
+17	48273464	.	T	C	.	PASS	DP=95;SS=1;SSC=0;GPV=4.3861E-56;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:45:0:45:100%:0,0,44,1	1/1:.:50:0:49:100%:0,0,43,6
+1	22329414	.	G	A	.	PASS	DP=72;SS=1;SSC=0;GPV=6.7558E-43;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:30:0:30:100%:0,0,29,1	1/1:.:42:0:42:100%:0,0,40,2
+13	33101731	.	T	C	.	PASS	DP=47;SS=1;SSC=0;GPV=6.1512E-28;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:29:0:29:100%:0,0,1,28	1/1:.:18:0:18:100%:0,0,1,17
+2	106715342	.	G	A/T	.	PASS	DP=164;SS=5;SSC=0;GPV=1E0;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:64:0:27:100%:0,0,0,34	0/1:.:100:0:51:100%:0,0,2,49
+11	60776334	.	A	G	.	PASS	DP=34;SS=1;SSC=0;GPV=3.5146E-20;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,1,12	1/1:.:21:0:21:100%:0,0,1,20
+6	150202644	.	T	C	.	PASS	DP=24;SS=1;SSC=0;GPV=1.0135E-4;SPV=8.4956E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:5:6:54.55%:1,4,1,5	0/1:.:13:7:5:41.67%:0,7,0,5
+12	66921167	.	G	A	.	PASS	DP=65;SS=3;SSC=31;GPV=1E0;SPV=7.4916E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:17:12:5:29.41%:6,6,5,0	0/0:.:48:48:0:0%:32,16,0,0
+8	144077940	.	G	A	.	PASS	DP=55;SS=1;SSC=0;GPV=2.9965E-10;SPV=8.3361E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:29:14:15:51.72%:0,14,0,15	0/1:.:26:15:11:42.31%:0,15,0,11
+1	2328714	.	A	G	.	PASS	DP=206;SS=1;SSC=0;GPV=2.4067E-123;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:91:0:91:100%:0,0,1,90	1/1:.:115:0:115:100%:0,0,0,115
+7	150696111	.	T	G	.	PASS	DP=746;SS=1;SSC=5;GPV=5.1272E-129;SPV=2.9396E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:367:197:167:45.88%:157,40,132,35	0/1:.:379:195:181:48.14%:142,53,140,41
+16	14978207	.	T	C	.	PASS	DP=181;SS=1;SSC=0;GPV=1.0132E-107;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:97:0:96:100%:0,0,56,40	1/1:.:84:0:84:100%:0,0,58,26
+1	248138520	.	A	G	.	PASS	DP=199;SS=1;SSC=0;GPV=1.5463E-118;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:148:0:148:100%:0,0,80,68	1/1:.:51:0:50:100%:0,0,28,22
+5	169129579	.	C	T	.	PASS	DP=78;SS=1;SSC=2;GPV=1.0137E-17;SPV=5.3475E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:36:16:20:55.56%:0,16,2,18	0/1:.:42:18:24:57.14%:1,17,0,24
+9	69423844	.	C	G	.	PASS	DP=312;SS=1;SSC=35;GPV=1E0;SPV=3.029E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:256:154:102:39.84%:6,148,14,88	0/1:.:56:19:37:66.07%:0,19,3,34
+2	27685388	.	G	A	.	PASS	DP=51;SS=1;SSC=0;GPV=2.5024E-30;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:26:0:26:100%:0,0,26,0	1/1:.:25:0:25:100%:0,0,25,0
+17	36353560	.	C	T	.	PASS	DP=83;SS=1;SSC=0;GPV=1.729E-49;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:41:0:41:100%:0,0,35,6	1/1:.:42:0:42:100%:0,0,40,2
+2	120395657	.	A	G	.	PASS	DP=106;SS=1;SSC=0;GPV=1.1051E-62;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:29:0:29:100%:0,0,29,0	1/1:.:77:0:76:100%:0,0,76,0
+1	146019571	.	A	C	.	PASS	DP=32;SS=1;SSC=0;GPV=1.7351E-4;SPV=9.3779E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:7:6:46.15%:5,2,5,1	0/1:.:19:14:5:26.32%:8,6,2,3
+16	4937339	.	A	G	.	PASS	DP=131;SS=1;SSC=0;GPV=2.7519E-75;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:74:0:69:100%:0,0,0,69	1/1:.:57:0:57:100%:0,0,0,57
+6	158659332	.	C	G	.	PASS	DP=107;SS=1;SSC=2;GPV=1.9437E-16;SPV=5.5482E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:63:37:26:41.27%:16,21,13,13	0/1:.:44:25:18:41.86%:19,6,11,7
+4	190522854	.	G	A	.	PASS	DP=17;SS=1;SSC=0;GPV=4.6348E-4;SPV=9.5553E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:3:6:66.67%:3,0,4,2	0/1:.:8:5:3:37.5%:4,1,1,2
+10	127520313	.	A	G	.	PASS	DP=40;SS=3;SSC=25;GPV=1E0;SPV=2.6595E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:11:14:56%:0,11,0,14	1/1:.:15:0:14:100%:0,0,0,14
+7	99302994	.	C	T	.	PASS	DP=89;SS=1;SSC=0;GPV=4.3706E-53;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:66:0:66:100%:0,0,65,1	1/1:.:23:0:23:100%:0,0,23,0
+6	25727054	.	A	G	.	PASS	DP=123;SS=1;SSC=0;GPV=1.7402E-73;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:86:0:86:100%:0,0,75,11	1/1:.:37:0:37:100%:0,0,35,2
+4	42032024	.	A	G	.	PASS	DP=133;SS=1;SSC=6;GPV=1.4535E-22;SPV=2.4421E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:72:42:30:41.67%:11,31,14,16	0/1:.:61:31:30:49.18%:14,17,11,19
+9	69959656	.	G	T	.	PASS	DP=69;SS=1;SSC=5;GPV=4.897E-26;SPV=3.142E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:4:16:80%:0,4,9,7	1/1:.:44:5:37:88.1%:0,5,20,17
+7	104162615	.	A	C	.	PASS	DP=33;SS=1;SSC=1;GPV=4.7095E-18;SPV=6.6667E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:11:0:11:100%:0,0,11,0	1/1:.:22:1:21:95.45%:1,0,18,3
+1	57224460	.	G	C	.	PASS	DP=30;SS=1;SSC=1;GPV=9.3503E-8;SPV=7.688E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:21:8:13:61.9%:1,7,2,11	0/1:.:9:4:5:55.56%:1,3,1,4
+2	106993152	.	G	T	.	PASS	DP=39;SS=1;SSC=0;GPV=2.1927E-6;SPV=9.6157E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:9:10:52.63%:0,9,1,9	0/1:.:20:14:6:30%:0,14,0,6
+1	116108044	.	T	G	.	PASS	DP=171;SS=1;SSC=0;GPV=2.589E-102;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:74:0:74:100%:0,0,23,51	1/1:.:97:0:97:100%:0,0,34,63
+19	10692117	.	T	C	.	PASS	DP=229;SS=1;SSC=6;GPV=2.8697E-49;SPV=2.163E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:94:45:48:51.61%:15,30,22,26	0/1:.:135:57:78:57.78%:23,34,28,50
+2	73651967	.	C	T	.	PASS	DP=321;SS=1;SSC=1;GPV=6.7289E-68;SPV=7.496E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:166:73:93:56.02%:28,45,37,56	0/1:.:155:73:82:52.9%:34,39,30,52
+14	19988792	.	A	G	.	PASS	DP=674;SS=1;SSC=1;GPV=3.2583E-53;SPV=6.9779E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:355:267:86:24.36%:116,151,32,54	0/1:.:319:245:73:22.96%:104,141,28,45
+2	30863108	.	A	G	.	PASS	DP=383;SS=1;SSC=59;GPV=1E0;SPV=1.1719E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:229:138:91:39.74%:37,101,37,54	0/1:.:154:53:98:64.9%:19,34,50,48
+5	13701617	.	GA	G	.	PASS	DP=77;SS=1;SSC=1;GPV=6.0706E-6;SPV=6.3978E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:47:35:10:22.22%:0,35,0,10	0/1:.:30:22:6:21.43%:0,22,0,6
+22	16279410	.	A	C	.	PASS	DP=35;SS=3;SSC=18;GPV=1E0;SPV=1.3216E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:17:8:32%:0,17,0,8	1/1:.:10:2:8:80%:0,2,4,4
+11	1017110	.	C	T	.	PASS	DP=1135;SS=1;SSC=2;GPV=6.8889E-85;SPV=5.2475E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:581:447:131:22.66%:93,354,18,113	0/1:.:554:426:125:22.69%:85,341,24,101
+1	110255596	.	C	G	.	PASS	DP=36;SS=1;SSC=10;GPV=4.8188E-6;SPV=8.7474E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:10:3:23.08%:9,1,3,0	0/1:.:23:11:12:52.17%:11,0,11,1
+2	73518533	.	G	A	.	PASS	DP=86;SS=1;SSC=1;GPV=3.2999E-18;SPV=7.135E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:49:22:27:55.1%:16,6,21,6	0/1:.:37:18:19:51.35%:15,3,17,2
+3	9787527	.	C	T	.	PASS	DP=258;SS=1;SSC=38;GPV=1E0;SPV=1.3281E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:127:92:35:27.56%:43,49,20,15	0/1:.:131:65:66:50.38%:22,43,29,37
+15	32720300	.	G	A	.	PASS	DP=99;SS=1;SSC=17;GPV=1E0;SPV=1.6713E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:72:53:19:26.39%:53,0,19,0	0/1:.:27:13:14:51.85%:13,0,14,0
+1	152284457	.	T	A	.	PASS	DP=1729;SS=1;SSC=0;GPV=5.452E-229;SPV=9.8374E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:979:588:388:39.75%:261,327,211,177	0/1:.:750:488:261:34.85%:239,249,147,114
+2	175245627	.	TATC	T	.	PASS	DP=57;SS=1;SSC=2;GPV=7.7462E-7;SPV=6.2937E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:22:15:7:31.82%:0,15,1,6	0/1:.:35:24:11:31.43%:2,22,1,10
+19	8160517	.	A	G	.	PASS	DP=58;SS=1;SSC=0;GPV=1.6283E-34;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:25:0:25:100%:0,0,0,25	1/1:.:33:0:33:100%:0,0,0,33
+1	68628451	.	G	A	.	PASS	DP=148;SOMATIC;SS=2;SSC=23;GPV=1E0;SPV=4.021E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:62:49:12:19.67%:38,11,1,11	0/1:.:86:49:35:41.67%:35,14,10,25
+1	1991014	.	A	G	.	PASS	DP=208;SS=1;SSC=0;GPV=9.98E-34;SPV=9.4655E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:117:59:56:48.7%:31,28,33,23	0/1:.:91:56:35:38.46%:31,25,16,19
+18	11999038	.	G	A	.	PASS	DP=350;SS=1;SSC=0;GPV=3.5653E-60;SPV=9.9795E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:156:71:85:54.49%:64,7,72,13	0/1:.:194:117:77:39.69%:98,19,67,10
+3	129821650	.	G	A	.	PASS	DP=130;SS=1;SSC=0;GPV=3.5948E-19;SPV=9.2917E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:66:36:30:45.45%:9,27,10,20	0/1:.:64:42:22:34.38%:20,22,7,15
+6	90340446	.	C	T	.	PASS	DP=140;SS=1;SSC=0;GPV=6.4964E-22;SPV=9.2045E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:74:39:35:47.3%:29,10,22,13	0/1:.:66:41:24:36.92%:32,9,16,8
+4	103723657	.	C	A	.	PASS	DP=141;SOMATIC;SS=2;SSC=30;GPV=1E0;SPV=7.9596E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:127:127:0:0%:112,15,0,0	0/1:.:14:11:3:21.43%:11,0,3,0
+11	117982495	.	T	G	.	PASS	DP=254;SS=1;SSC=0;GPV=2.1752E-147;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:107:0:106:100%:0,0,78,28	1/1:.:147:0:140:100%:0,0,97,43
+2	88083784	.	G	A	.	PASS	DP=478;SS=1;SSC=3;GPV=2.7663E-44;SPV=4.1145E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:452:330:122:26.99%:159,171,41,81	0/1:.:26:18:8:30.77%:1,17,0,8
+1	228494790	.	G	A	.	PASS	DP=46;SS=1;SSC=1;GPV=9.761E-10;SPV=6.9609E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:36:17:19:52.78%:14,3,14,5	0/1:.:10:5:5:50%:4,1,3,2
+19	27739816	.	T	A	.	PASS	DP=20;SS=1;SSC=12;GPV=2.5053E-7;SPV=5.418E-2	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:10:0:9:100%:0,0,3,6	0/1:.:10:4:6:60%:1,3,5,1
+18	106867	.	G	T	.	PASS	DP=47;SS=1;SSC=0;GPV=1.5372E-22;SPV=8.8521E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:19:1:18:94.74%:0,1,10,8	1/1:.:28:3:25:89.29%:2,1,14,11
+4	89726283	.	A	C	.	PASS	DP=61;SS=1;SSC=0;GPV=2.609E-36;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:35:0:35:100%:0,0,0,35	1/1:.:26:0:26:100%:0,0,0,26
+11	40058065	.	GA	G	.	PASS	DP=25;SOMATIC;SS=2;SSC=8;GPV=1E0;SPV=1.5826E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:11:11:0:0%:11,0,0,0	0/1:.:14:11:3:21.43%:11,0,3,0
+1	111661413	.	T	C	.	PASS	DP=110;SS=1;SSC=0;GPV=1.9484E-19;SPV=8.3281E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:62:31:31:50%:24,7,29,2	0/1:.:48:27:20:42.55%:25,2,16,4
+1	205499660	.	C	T	.	PASS	DP=27;SS=3;SSC=15;GPV=1E0;SPV=2.8205E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:15:9:6:40%:9,0,6,0	1/1:.:12:2:10:83.33%:1,1,8,2
+3	42166827	.	C	A	.	PASS	DP=52;SS=1;SSC=0;GPV=7.3303E-11;SPV=9.9396E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:27:9:18:66.67%:9,0,18,0	0/1:.:25:16:9:36%:16,0,9,0
+8	89081541	.	A	T	.	PASS	DP=55;SS=1;SSC=3;GPV=5.6837E-31;SPV=4.1818E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:32:0:32:100%:0,0,32,0	1/1:.:23:1:22:95.65%:1,0,22,0
+19	19547086	.	T	C	.	PASS	DP=297;SS=1;SSC=1;GPV=1.4045E-175;SPV=7.2054E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:214:1:213:99.53%:0,1,2,211	1/1:.:83:0:83:100%:0,0,3,80
+4	174649380	.	T	C	.	PASS	DP=16;SS=1;SSC=24;GPV=1E0;SPV=3.4965E-3	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:0:8:100%:0,0,1,7	0/1:.:8:6:2:25%:0,6,0,2
+4	187516655	.	T	A	.	PASS	DP=55;SS=1;SSC=0;GPV=4.0229E-32;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:0:11:100%:0,0,11,0	1/1:.:43:0:43:100%:0,0,43,0
+11	30938373	.	C	A	.	PASS	DP=40;SOMATIC;SS=2;SSC=12;GPV=1E0;SPV=5.7692E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:30:30:0:0%:25,5,0,0	0/1:.:10:8:2:20%:6,2,1,1
+3	75787927	.	A	G	.	PASS	DP=156;SS=1;SSC=1;GPV=2.3242E-33;SPV=7.112E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:79:34:44:56.41%:13,21,20,24	0/1:.:77:36:41:53.25%:18,18,16,25
+19	34954873	.	C	G	.	PASS	DP=121;SS=1;SSC=0;GPV=2.7616E-72;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:74:0:74:100%:0,0,74,0	1/1:.:47:0:47:100%:0,0,47,0
+2	92286733	.	T	A	.	PASS	DP=50;SS=1;SSC=1;GPV=5.0549E-28;SPV=6.4E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:18:0:18:100%:0,0,0,18	1/1:.:32:1:31:96.88%:0,1,2,29
+4	157839777	.	A	G	.	PASS	DP=18;SS=3;SSC=19;GPV=1E0;SPV=1.1312E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:6:4:40%:3,3,2,2	1/1:.:8:0:8:100%:0,0,4,4
+13	98645297	.	G	A	.	PASS	DP=170;SS=1;SSC=0;GPV=5.6331E-36;SPV=9.5125E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:94:38:56:59.57%:15,23,20,36	0/1:.:76:39:36:48%:12,27,9,27
+5	133473917	.	TTC	T	.	PASS	DP=72;SS=1;SSC=1;GPV=5.3416E-11;SPV=7.654E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:14:11:44%:0,14,0,11	0/1:.:47:29:18:38.3%:0,29,0,18
+7	116145957	.	A	T	.	PASS	DP=142;SS=3;SSC=147;GPV=1E0;SPV=1.8352E-15	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:91:55:35:38.89%:55,0,35,0	1/1:.:51:0:51:100%:0,0,51,0
+9	88667582	.	T	G	.	PASS	DP=263;SS=1;SSC=0;GPV=1.3091E-157;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:210:0:210:100%:0,0,6,204	1/1:.:53:0:53:100%:0,0,1,52
+7	100608884	.	G	A	.	PASS	DP=74;SS=1;SSC=0;GPV=2.7049E-6;SPV=8.5686E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:33:24:9:27.27%:9,15,0,9	0/1:.:41:33:8:19.51%:15,18,2,6
+12	63954304	.	T	C	.	PASS	DP=561;SS=1;SSC=0;GPV=8.3989E-91;SPV=9.7979E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:277:143:134:48.38%:86,57,77,57	0/1:.:284:170:114:40.14%:97,73,65,49
+9	134387488	.	T	C	.	PASS	DP=269;SS=1;SSC=0;GPV=5.1525E-160;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:118:0:117:100%:0,0,37,80	1/1:.:151:0:150:100%:0,0,52,98
+7	96405822	.	C	T	.	PASS	DP=16;SOMATIC;SS=2;SSC=6;GPV=1E0;SPV=2.3333E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:8:8:0:0%:0,8,0,0	0/1:.:8:6:2:25%:0,6,0,2
+19	2916048	.	T	A	.	PASS	DP=198;SS=1;SSC=1;GPV=1.2155E-113;SPV=7.7359E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:104:1:102:99.03%:1,0,90,12	1/1:.:94:1:93:98.94%:1,0,80,13
+1	19585124	.	C	T	.	PASS	DP=510;SS=1;SSC=1;GPV=2.333E-88;SPV=6.7973E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:259:135:123:47.67%:88,47,87,36	0/1:.:251:135:115:46%:91,44,72,43
+5	89990545	.	C	A	.	PASS	DP=119;SS=1;SSC=0;GPV=4.3819E-71;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:0:58:100%:0,0,3,55	1/1:.:61:0:61:100%:0,0,2,59
+7	142206827	.	A	C	.	PASS	DP=562;SS=1;SSC=6;GPV=8.0821E-47;SPV=2.2422E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:281:215:65:23.21%:74,141,18,47	0/1:.:281:207:74:26.33%:56,151,18,56
+18	21804963	.	A	G	.	PASS	DP=503;SS=1;SSC=0;GPV=3.9699E-84;SPV=8.2776E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:234:122:111:47.64%:115,7,101,10	0/1:.:269:150:117:43.82%:142,8,112,5
+22	29806131	.	T	C	.	PASS	DP=308;SS=1;SSC=0;GPV=6.5409E-26;SPV=9.5374E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:142:101:41:28.87%:33,68,7,34	0/1:.:166:130:35:21.21%:45,85,10,25
+17	10542471	.	T	G	.	PASS	DP=505;SS=1;SSC=8;GPV=4.6576E-298;SPV=1.323E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:321:0:321:100%:0,0,143,178	1/1:.:184:2:182:98.91%:1,1,93,89
+1	11575375	.	T	A	.	PASS	DP=160;SS=1;SSC=0;GPV=2.2136E-27;SPV=8.8296E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:74:37:37:50%:32,5,34,3	0/1:.:86:50:36:41.86%:46,4,35,1
+8	35794826	.	C	G	.	PASS	DP=28;SS=1;SSC=0;GPV=1.3074E-16;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:19:0:19:100%:0,0,12,7	1/1:.:9:0:9:100%:0,0,6,3
+8	94658590	.	G	A	.	PASS	DP=49;SS=1;SSC=6;GPV=1.1173E-8;SPV=2.1351E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:22:14:8:36.36%:6,8,0,8	0/1:.:27:13:14:51.85%:4,9,3,11
+2	87208037	.	G	A	.	PASS	DP=18;SS=1;SSC=3;GPV=2.2727E-2;SPV=5E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:7:2:22.22%:7,0,2,0	0/1:.:9:6:3:33.33%:6,0,3,0
+5	46380257	.	A	G	.	PASS	DP=25;SS=1;SSC=2;GPV=2.7767E-12;SPV=6E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:9:1:8:88.89%:0,1,7,1	1/1:.:16:1:15:93.75%:1,0,9,6
+8	28633098	.	A	C	.	PASS	DP=18;SS=1;SSC=0;GPV=2.2727E-2;SPV=9.1176E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:8:5:3:37.5%:5,0,3,0	0/1:.:10:8:2:20%:8,0,2,0
+2	85808737	.	A	G	.	PASS	DP=991;SS=1;SSC=20;GPV=1E0;SPV=8.5575E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:493:260:229:46.83%:212,48,172,57	0/1:.:498:226:272:54.62%:173,53,213,59
+8	120940652	.	C	T	.	PASS	DP=540;SS=1;SSC=0;GPV=4.6205E-81;SPV=9.7761E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:273:147:124:45.76%:102,45,87,37	0/1:.:267:166:100:37.59%:110,56,78,22
+X	91715433	.	C	G	.	PASS	DP=30;SS=3;SSC=18;GPV=1E0;SPV=1.3393E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:21:13:8:38.1%:3,10,2,6	1/1:.:9:1:8:88.89%:1,0,3,5
+17	44159849	.	T	C	.	PASS	DP=195;SS=1;SSC=0;GPV=1.5634E-115;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:94:0:94:100%:0,0,60,34	1/1:.:101:0:99:100%:0,0,54,45
+3	122000871	.	C	T	.	PASS	DP=322;SS=1;SSC=0;GPV=1.7408E-192;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:187:0:187:100%:0,0,156,31	1/1:.:135:0:134:100%:0,0,122,12
+19	8467574	.	T	G	.	PASS	DP=20;SS=1;SSC=0;GPV=7.2544E-12;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:10:0:10:100%:0,0,0,10	1/1:.:10:0:10:100%:0,0,0,10
+9	97369151	.	G	A	.	PASS	DP=152;SS=1;SSC=0;GPV=1.0373E-20;SPV=8.2211E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:53:31:22:41.51%:25,6,17,5	0/1:.:99:64:35:35.35%:50,14,27,8
+7	10492468	.	A	T	.	PASS	DP=323;SS=1;SSC=3;GPV=6.244E-187;SPV=4.3726E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:148:2:146:98.65%:1,1,113,33	1/1:.:175:1:174:99.43%:1,0,144,30
+20	44422705	.	G	T	.	PASS	DP=232;SS=1;SSC=0;GPV=2.2634E-138;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:55:0:54:100%:0,0,1,53	1/1:.:177:0:177:100%:0,0,13,164
+9	69846339	.	C	A	.	PASS	DP=70;SS=1;SSC=2;GPV=7.9293E-13;SPV=5.1595E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:20:11:9:45%:6,5,8,1	0/1:.:50:26:24:48%:20,6,15,9
+16	27145222	.	C	A	.	PASS	DP=85;SS=1;SSC=4;GPV=1.989E-27;SPV=3.6648E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:51:15:36:70.59%:13,2,31,5	1/1:.:34:8:26:76.47%:6,2,20,6
+1	89886796	.	G	A	.	PASS	DP=66;SS=1;SSC=0;GPV=2.6498E-39;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:35:0:35:100%:0,0,0,35	1/1:.:31:0:31:100%:0,0,0,31
+2	166903228	.	C	T	.	PASS	DP=170;SS=1;SSC=0;GPV=1.0326E-101;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:85:0:85:100%:0,0,85,0	1/1:.:85:0:85:100%:0,0,84,1
+1	161589348	.	A	C	.	PASS	DP=61;SS=1;SSC=0;GPV=2.609E-36;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:34:0:34:100%:0,0,2,32	1/1:.:27:0:27:100%:0,0,1,26
+21	32999423	.	G	A	.	PASS	DP=191;SS=1;SSC=1;GPV=3.4846E-42;SPV=6.565E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:106:45:60:57.14%:30,15,41,19	0/1:.:85:38:47:55.29%:29,9,34,13
+5	75216411	.	T	C	.	PASS	DP=36;SS=1;SSC=0;GPV=2.2598E-21;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:22:0:22:100%:0,0,21,1	1/1:.:14:0:14:100%:0,0,12,2
+7	64452830	.	C	T	.	PASS	DP=1042;SS=3;SSC=220;GPV=1E0;SPV=8.5285E-23	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:406:210:195:48.15%:82,128,84,111	1/1:.:636:141:494:77.8%:29,112,160,334
+6	32608903	.	T	C	.	PASS	DP=134;SS=1;SSC=0;GPV=3.8914E-9;SPV=8.4042E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:20:15:5:25%:15,0,5,0	0/1:.:114:93:21:18.42%:92,1,21,0
+3	145827939	.	G	C	.	PASS	DP=90;SS=1;SSC=0;GPV=1.0988E-53;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:38:0:38:100%:0,0,38,0	1/1:.:52:0:52:100%:0,0,52,0
+10	3147456	.	C	T	.	PASS	DP=119;SS=1;SSC=7;GPV=7.7481E-30;SPV=1.8482E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:65:28:37:56.92%:20,8,32,5	0/1:.:54:18:36:66.67%:11,7,24,12
+1	7869915	.	G	C	.	PASS	DP=105;SS=1;SSC=0;GPV=4.3992E-62;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:55:0:54:100%:0,0,54,0	1/1:.:50:0:50:100%:0,0,49,1
+10	71139486	.	TCATCCCATAC	T	.	PASS	DP=73;SS=3;SSC=60;GPV=1E0;SPV=9.4552E-7	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:27:15:12:44.44%:15,0,12,0	0/0:.:46:46:0:0%:46,0,0,0
+2	91885725	.	T	C	.	PASS	DP=52;SS=1;SSC=0;GPV=2.38E-11;SPV=9.8492E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:31:11:20:64.52%:11,0,20,0	0/1:.:21:13:8:38.1%:13,0,8,0
+22	18209613	.	A	G	.	PASS	DP=183;SS=3;SSC=40;GPV=1E0;SPV=9.8982E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:113:58:55:48.67%:23,35,20,35	1/1:.:70:16:54:77.14%:9,7,18,36
+17	80726092	.	G	A	.	PASS	DP=70;SS=1;SSC=9;GPV=2.7419E-13;SPV=1.1581E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:35:21:14:40%:21,0,12,2	0/1:.:35:15:20:57.14%:15,0,20,0
+3	49689210	.	G	A	.	PASS	DP=42;SS=1;SSC=8;GPV=1.6529E-10;SPV=1.4218E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:6:4:40%:3,3,3,1	0/1:.:32:11:21:65.62%:6,5,15,6
+4	190982777	.	G	C	.	PASS	DP=33;SS=1;SSC=0;GPV=1.3852E-19;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,12,1	1/1:.:20:0:20:100%:0,0,18,2
+4	178272748	.	G	A	.	PASS	DP=711;SS=1;SSC=0;GPV=1.1465E-111;SPV=9.9622E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:422:223:199:47.16%:29,194,29,170	0/1:.:289:181:108:37.37%:29,152,16,92
+1	55266845	.	C	T	.	PASS	DP=29;SS=1;SSC=0;GPV=3.3259E-17;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:14:0:14:100%:0,0,0,14	1/1:.:15:0:15:100%:0,0,0,15
+2	80529706	.	A	G	.	PASS	DP=234;SS=1;SSC=1;GPV=4.5652E-44;SPV=6.324E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:131:65:66:50.38%:25,40,22,44	0/1:.:103:52:50:49.02%:16,36,17,33
+1	159776366	.	G	A	.	PASS	DP=4092;SS=1;SSC=43;GPV=1E0;SPV=4.2227E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:3014:1691:1305:43.56%:1165,526,905,400	0/1:.:1078:680:393:36.63%:444,236,252,141
+7	72744143	.	A	G	.	PASS	DP=194;SS=1;SSC=4;GPV=4.2485E-36;SPV=3.4253E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:79:42:37:46.84%:33,9,35,2	0/1:.:115:56:58:50.88%:51,5,47,11
+10	7820699	.	C	A	.	PASS	DP=276;SOMATIC;SS=2;SSC=152;GPV=1E0;SPV=5.6613E-16	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:104:92:12:11.54%:92,0,12,0	0/1:.:172:68:99:59.28%:68,0,99,0
+19	50040152	.	T	C	.	PASS	DP=47;SS=1;SSC=0;GPV=3.0639E-12;SPV=9.8635E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:1:7:87.5%:1,0,7,0	0/1:.:39:17:22:56.41%:17,0,22,0
+1	2584408	.	C	A	.	PASS	DP=24;SOMATIC;SS=2;SSC=11;GPV=1E0;SPV=6.7288E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:11:11:0:0%:10,1,0,0	0/1:.:13:9:4:30.77%:5,4,2,2
+13	78192207	.	T	C	.	PASS	DP=720;SS=1;SSC=0;GPV=4.0983E-122;SPV=8.4331E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:385:201:183:47.66%:62,139,60,123	0/1:.:335:187:148:44.18%:57,130,42,106
+11	29297841	.	A	G	.	PASS	DP=78;SS=1;SSC=27;GPV=1E0;SPV=1.9334E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:51:32:19:37.25%:10,22,4,15	0/1:.:27:7:20:74.07%:2,5,6,14
+17	21208413	.	C	T	.	PASS	DP=707;SS=1;SSC=3;GPV=5.5986E-61;SPV=4.7141E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:378:282:96:25.4%:82,200,18,78	0/1:.:329:243:85:25.91%:62,181,12,73
+15	72672037	.	A	G	.	PASS	DP=37;SS=1;SSC=0;GPV=5.7269E-22;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:25:0:25:100%:0,0,10,15	1/1:.:12:0:12:100%:0,0,3,9
+12	53202380	.	T	C	.	PASS	DP=95;SS=1;SSC=0;GPV=4.3861E-56;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:48:0:47:100%:0,0,32,15	1/1:.:47:0:47:100%:0,0,34,13
+20	55108617	.	C	A	.	PASS	DP=537;SS=1;SSC=0;GPV=2.2575E-303;SPV=9.9513E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:238:1:237:99.58%:0,1,105,132	1/1:.:299:8:291:97.32%:0,8,123,168
+3	27332282	.	C	T	.	PASS	DP=314;SS=3;SSC=100;GPV=1E0;SPV=9.0552E-11	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:230:121:109:47.39%:38,83,28,81	0/0:.:84:75:8:9.64%:16,59,1,7
+8	11614313	.	A	G	.	PASS	DP=77;SS=1;SSC=2;GPV=3.879E-12;SPV=5.6893E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:34:20:14:41.18%:20,0,14,0	0/1:.:43:25:18:41.86%:25,0,18,0
+6	165713917	.	C	T	.	PASS	DP=679;SS=1;SSC=75;GPV=1E0;SPV=3.0168E-8	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:501:264:237:47.31%:175,89,162,75	0/1:.:178:135:43:24.16%:84,51,18,25
+7	48443570	.	G	A	.	PASS	DP=88;SS=1;SSC=28;GPV=1E0;SPV=1.3437E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:46:31:15:32.61%:0,31,0,15	0/1:.:42:14:28:66.67%:0,14,0,28
+6	89913209	.	C	T	.	PASS	DP=1073;SS=1;SSC=16;GPV=1E0;SPV=2.0545E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:679:402:276:40.71%:68,334,41,235	0/1:.:394:207:186:47.33%:45,162,31,155
+Y	58996975	.	G	A	.	PASS	DP=102;SS=1;SSC=4;GPV=6.107E-18;SPV=3.313E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:30:17:12:41.38%:9,8,5,7	0/1:.:72:37:35:48.61%:23,14,18,17
+22	16919113	.	C	G	.	PASS	DP=772;SOMATIC;SS=2;SSC=43;GPV=1E0;SPV=4.2868E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:535:486:49:9.16%:152,334,4,45	0/1:.:237:189:47:19.92%:52,137,11,36
+7	67464503	.	G	A	.	PASS	DP=19;SS=1;SSC=2;GPV=1.5455E-3;SPV=6.0503E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:6:4:40%:5,1,2,2	0/1:.:9:5:4:44.44%:2,3,3,1
+15	69325376	.	C	T	.	PASS	DP=119;SS=1;SSC=2;GPV=2.1238E-20;SPV=5.4001E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:60:33:27:45%:5,28,3,24	0/1:.:59:32:27:45.76%:5,27,2,25
+2	228113175	.	A	G	.	PASS	DP=297;SS=1;SSC=0;GPV=7.5158E-177;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:129:0:129:100%:0,0,90,39	1/1:.:168:0:166:100%:0,0,129,37
+7	131438872	.	T	C	.	PASS	DP=287;SS=1;SSC=41;GPV=1E0;SPV=7.7091E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:168:86:81:48.5%:44,42,43,38	0/1:.:119:34:85:71.43%:17,17,45,40
+3	98031378	.	G	T	.	PASS	DP=169;SS=1;SSC=2;GPV=1.3342E-31;SPV=5.2368E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:78:40:38:48.72%:26,14,30,8	0/1:.:91:46:45:49.45%:32,14,30,15
+1	119584779	.	C	T	.	PASS	DP=184;SS=1;SSC=0;GPV=4.0017E-110;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:90:0:90:100%:0,0,90,0	1/1:.:94:0:94:100%:0,0,93,1
+X	7618386	.	C	T	.	PASS	DP=45;SS=1;SSC=0;GPV=9.6314E-27;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:20:0:20:100%:0,0,18,2	1/1:.:25:0:25:100%:0,0,22,3
+6	17799575	.	A	G	.	PASS	DP=138;SS=1;SSC=0;GPV=1.7164E-82;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:60:0:60:100%:0,0,14,46	1/1:.:78:0:78:100%:0,0,14,64
+12	27064232	.	C	T	.	PASS	DP=357;SS=1;SSC=0;GPV=1.384E-58;SPV=9.5439E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:203:105:98:48.28%:26,79,7,91	0/1:.:154:92:61:39.87%:20,72,7,54
+15	50873358	.	T	A	.	PASS	DP=28;SOMATIC;SS=2;SSC=11;GPV=1E0;SPV=6.7155E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:16:16:0:0%:0,16,0,0	0/1:.:12:9:3:25%:0,9,0,3
+1	13368549	.	C	T	.	PASS	DP=2809;SS=1;SSC=5;GPV=4.2765E-236;SPV=3.0259E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:1264:950:312:24.72%:815,135,250,62	0/1:.:1545:1148:396:25.65%:882,266,299,97
+9	102879336	.	A	G	.	PASS	DP=19;SS=1;SSC=0;GPV=2.8292E-11;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:0:8:100%:0,0,2,6	1/1:.:11:0:11:100%:0,0,1,10
+5	157358551	.	T	G	.	PASS	DP=118;SS=1;SSC=0;GPV=1.7454E-70;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:39:0:39:100%:0,0,1,38	1/1:.:79:0:79:100%:0,0,6,73
+19	57723013	.	G	A	.	PASS	DP=202;SS=1;SSC=0;GPV=7.2595E-36;SPV=9.9878E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:105:44:60:57.69%:30,14,26,34	0/1:.:97:59:35:37.23%:40,19,14,21
+14	100792220	.	C	T	.	PASS	DP=44;SS=1;SSC=0;GPV=3.8097E-26;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:29:0:29:100%:0,0,0,29	1/1:.:15:0:15:100%:0,0,0,15
+1	248789454	.	G	C	.	PASS	DP=303;SS=1;SSC=0;GPV=1.1622E-181;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:151:0:151:100%:0,0,151,0	1/1:.:152:0:152:100%:0,0,150,2
+9	33613912	.	C	G	.	PASS	DP=294;SS=1;SSC=0;GPV=1.1984E-175;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:107:0:107:100%:0,0,59,48	1/1:.:187:0:186:100%:0,0,107,79
+6	139242327	.	C	A	.	PASS	DP=44;SOMATIC;SS=2;SSC=13;GPV=1E0;SPV=4.2283E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:28:28:0:0%:0,28,0,0	0/1:.:16:13:3:18.75%:0,13,0,3
+6	79656562	.	A	T	.	PASS	DP=485;SS=3;SSC=151;GPV=1E0;SPV=6.3352E-16	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:306:184:122:39.87%:57,127,24,98	1/1:.:179:41:138:77.09%:15,26,39,99
+13	111154058	.	T	A	.	PASS	DP=151;SS=1;SSC=0;GPV=1.0666E-89;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:39:0:38:100%:0,0,24,14	1/1:.:112:0:112:100%:0,0,63,49
+10	70955056	.	A	G	.	PASS	DP=196;SS=1;SSC=2;GPV=4.1279E-34;SPV=6.0262E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:81:43:38:46.91%:5,38,7,31	0/1:.:115:62:53:46.09%:7,55,10,43
+17	19689559	.	C	T	.	PASS	DP=22;SS=1;SSC=0;GPV=4.7526E-13;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,0,13	1/1:.:9:0:9:100%:0,0,0,9
+19	41312612	.	G	C	.	PASS	DP=173;SS=1;SSC=23;GPV=1E0;SPV=4.0628E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:68:38:30:44.12%:0,38,1,29	0/1:.:105:36:69:65.71%:0,36,0,69
+5	134164284	.	GT	G	.	PASS	DP=76;SS=1;SSC=0;GPV=4.2487E-10;SPV=9.1287E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:39:22:16:42.11%:22,0,16,0	0/1:.:37:26:11:29.73%:25,1,9,2
+7	134849280	.	T	A	.	PASS	DP=229;SS=1;SSC=0;GPV=1.4391E-136;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:126:0:126:100%:0,0,64,62	1/1:.:103:0:102:100%:0,0,58,44
+Y	13465100	.	G	A	.	PASS	DP=200;SS=1;SSC=1;GPV=1.4735E-15;SPV=7.5611E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:78:55:19:25.68%:14,41,9,10	0/1:.:122:90:26:22.41%:31,59,5,21
+9	65518799	.	C	G	.	PASS	DP=26;SS=3;SSC=23;GPV=1E0;SPV=4.7431E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:5:5:50%:4,1,5,0	0/0:.:16:15:0:0%:13,2,0,0
+7	93065153	.	A	C	.	PASS	DP=24;SOMATIC;SS=2;SSC=18;GPV=1E0;SPV=1.2749E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:11:11:0:0%:11,0,0,0	0/1:.:13:7:6:46.15%:7,0,6,0
+9	43163048	.	C	T	.	PASS	DP=67;SS=1;SSC=3;GPV=1.7848E-9;SPV=4.4263E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:39:25:14:35.9%:13,12,10,4	0/1:.:28:16:11:40.74%:9,7,8,3
+2	202575907	.	A	G	.	PASS	DP=91;SS=1;SSC=0;GPV=1.0988E-53;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:50:0:49:100%:0,0,10,39	1/1:.:41:0:41:100%:0,0,3,38
+9	79867082	.	A	C	.	PASS	DP=182;SS=1;SSC=14;GPV=1E0;SPV=3.6909E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:91:48:43:47.25%:48,0,43,0	0/1:.:91:35:56:61.54%:35,0,56,0
+19	27732058	.	A	C	.	PASS	DP=876;SS=1;SSC=3;GPV=2.6025E-80;SPV=4.9544E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:448:307:122:28.44%:161,146,66,56	0/1:.:428:283:114:28.72%:152,131,68,46
+12	53165862	.	C	T	.	PASS	DP=345;SS=1;SSC=6;GPV=1.0812E-53;SPV=2.3716E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:175:104:71:40.57%:68,36,47,24	0/1:.:170:93:76:44.97%:63,30,59,17
+8	6735423	.	C	G	.	PASS	DP=111;SS=1;SSC=0;GPV=4.3979E-65;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:0:56:100%:0,0,0,56	1/1:.:53:0:53:100%:0,0,2,51
+2	179567525	.	A	T	.	PASS	DP=28;SOMATIC;SS=2;SSC=16;GPV=1E0;SPV=2.4318E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:9:9:0:0%:2,7,0,0	0/1:.:19:11:8:42.11%:0,11,0,8
+10	91498127	.	T	C	.	PASS	DP=313;SS=1;SSC=51;GPV=1E0;SPV=6.5034E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:211:116:95:45.02%:51,65,35,60	0/1:.:102:82:20:19.61%:45,37,6,14
+15	31090389	.	G	A	.	PASS	DP=271;SS=1;SSC=4;GPV=4.3594E-46;SPV=3.2483E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:110:62:48:43.64%:53,9,34,14	0/1:.:161:85:76:47.2%:71,14,65,11
+18	54591354	.	C	T	.	PASS	DP=456;SS=1;SSC=7;GPV=2.5228E-82;SPV=1.8262E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:210:114:96:45.71%:18,96,21,75	0/1:.:246:122:124:50.41%:17,105,14,110
+11	94225920	.	C	T	.	PASS	DP=234;SS=1;SSC=1;GPV=7.2698E-36;SPV=7.1229E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:171:98:73:42.69%:73,25,57,16	0/1:.:63:38:25:39.68%:25,13,22,3
+12	82751955	.	A	G	.	PASS	DP=26;SS=1;SSC=0;GPV=2.0165E-15;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,12,1	1/1:.:13:0:13:100%:0,0,12,1
+2	133023213	.	G	C	.	PASS	DP=34;SS=1;SSC=0;GPV=8.2416E-17;SPV=9.1477E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:24:1:22:95.65%:0,1,18,4	1/1:.:10:1:9:90%:0,1,6,3
+2	15678501	.	GA	G	.	PASS	DP=82;SS=1;SSC=11;GPV=8.282E-9;SPV=7.7706E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:39:31:8:20.51%:5,26,1,7	0/1:.:43:27:16:37.21%:11,16,3,13
+6	150211123	.	A	T	.	PASS	DP=317;SS=1;SSC=0;GPV=2.8208E-188;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:158:0:157:100%:0,0,70,87	1/1:.:159:0:157:100%:0,0,79,78
+10	126691631	.	T	A	.	PASS	DP=59;SS=1;SSC=0;GPV=3.1153E-9;SPV=9.5055E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:33:17:16:48.48%:4,13,14,2	0/1:.:26:18:8:30.77%:6,12,5,3
+9	20982503	.	T	G	.	PASS	DP=94;SS=1;SSC=0;GPV=4.3861E-56;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:43:0:43:100%:0,0,0,43	1/1:.:51:0:51:100%:0,0,0,51
+15	21126936	.	T	C	.	PASS	DP=19;SS=1;SSC=4;GPV=6.2811E-5;SPV=3.9497E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:5:5:50%:5,0,5,0	0/1:.:9:3:6:66.67%:3,0,6,0
+7	23191636	.	A	G	.	PASS	DP=141;SS=1;SSC=3;GPV=1.5235E-81;SPV=4.0714E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:1:56:98.25%:1,0,49,7	1/1:.:83:0:83:100%:0,0,68,15
+14	24040430	.	C	T	.	PASS	DP=618;SS=1;SSC=155;GPV=1E0;SPV=2.6531E-16	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:331:151:179:54.24%:35,116,43,136	0/1:.:287:222:64:22.38%:39,183,14,50
+2	113819614	.	T	C	.	PASS	DP=20;SS=1;SSC=3;GPV=2.1796E-4;SPV=5E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:6:5:45.45%:6,0,5,0	0/1:.:9:4:5:55.56%:4,0,5,0
+1	9009547	.	C	A	.	PASS	DP=97;SS=1;SSC=2;GPV=4.1632E-19;SPV=5.8592E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:45:22:23:51.11%:2,20,2,21	0/1:.:52:25:26:50.98%:3,22,5,21
+Y	10029720	.	A	C	.	PASS	DP=543;SS=1;SSC=0;GPV=6.8168E-242;SPV=8.7449E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:250:24:226:90.4%:2,22,41,185	1/1:.:293:36:256:87.67%:8,28,31,225
+3	133484988	.	A	T	.	PASS	DP=104;SS=1;SSC=0;GPV=1.4543E-16;SPV=9.9879E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:80:40:40:50%:40,0,39,1	0/1:.:24:18:4:18.18%:18,0,4,0
+17	45214669	.	T	G	.	PASS	DP=523;SOMATIC;SS=2;SSC=124;GPV=1E0;SPV=3.8455E-13	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:209:167:42:20.1%:63,104,25,17	0/1:.:314:154:160:50.96%:56,98,114,46
+10	47254346	.	C	T	.	PASS	DP=59;SS=3;SSC=32;GPV=1E0;SPV=5.758E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:31:20:10:33.33%:8,12,3,7	0/0:.:28:28:0:0%:9,19,0,0
+13	20038584	.	A	G	.	PASS	DP=437;SS=1;SSC=0;GPV=2.9425E-262;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:267:0:267:100%:0,0,194,73	1/1:.:170:0:170:100%:0,0,122,48
+1	242048945	.	C	T	.	PASS	DP=428;SS=3;SSC=81;GPV=1E0;SPV=7.1589E-9	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:129:77:51:39.84%:8,69,3,48	0/0:.:299:256:41:13.8%:31,225,3,38
+11	9759918	.	G	A	.	PASS	DP=29;SS=1;SSC=8;GPV=2.1144E-8;SPV=1.3501E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:21:9:12:57.14%:1,8,0,12	1/1:.:8:1:7:87.5%:0,1,0,7
+1	160141196	.	C	T	.	PASS	DP=597;SS=1;SSC=2;GPV=0E0;SPV=6.0672E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:235:0:234:100%:0,0,112,122	1/1:.:362:1:360:99.72%:0,1,183,177
+9	137688048	.	T	C	.	PASS	DP=28;SS=1;SSC=4;GPV=9.1169E-4;SPV=3.7449E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:7:2:22.22%:7,0,2,0	0/1:.:19:12:7:36.84%:11,1,7,0
+4	44696538	.	C	G	.	PASS	DP=108;SS=1;SSC=0;GPV=1.7511E-64;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:0:58:100%:0,0,8,50	1/1:.:50:0:50:100%:0,0,5,45
+1	143767254	.	A	G	.	PASS	DP=207;SS=1;SSC=3;GPV=2.5561E-37;SPV=4.0672E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:99:53:46:46.46%:53,0,46,0	0/1:.:108:55:53:49.07%:54,1,53,0
+7	142480002	.	C	A	.	PASS	DP=772;SS=1;SSC=0;GPV=0E0;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:198:0:197:100%:0,0,65,132	1/1:.:574:0:574:100%:0,0,288,286
+19	52954507	.	T	C	.	PASS	DP=151;SS=1;SSC=0;GPV=1.0666E-89;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:132:0:131:100%:0,0,60,71	1/1:.:19:0:19:100%:0,0,4,15
+5	96785206	.	G	A	.	PASS	DP=35;SS=3;SSC=14;GPV=1E0;SPV=3.6146E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:24:11:13:54.17%:3,8,5,8	1/1:.:11:1:10:90.91%:0,1,3,7
+Y	10036057	.	G	A	.	PASS	DP=40;SS=1;SSC=0;GPV=9.3017E-24;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:21:0:21:100%:0,0,19,2	1/1:.:19:0:19:100%:0,0,18,1
+3	195393030	.	A	G	.	PASS	DP=457;SS=1;SSC=6;GPV=1.4966E-34;SPV=2.1074E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:173:138:35:20.23%:53,85,18,17	0/1:.:284:216:68:23.94%:83,133,19,49
+5	41004406	.	A	T	.	PASS	DP=640;SS=1;SSC=17;GPV=1E0;SPV=1.7456E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:354:183:171:48.31%:152,31,148,23	0/1:.:286:123:163:56.99%:107,16,147,16
+11	9627663	.	A	G	.	PASS	DP=251;SS=1;SSC=0;GPV=2.1457E-150;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:129:0:129:100%:0,0,129,0	1/1:.:122:0:122:100%:0,0,117,5
+7	150440043	.	C	T	.	PASS	DP=397;SS=1;SSC=2;GPV=2.1429E-234;SPV=5.1899E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:190:0:190:100%:0,0,75,115	1/1:.:207:1:204:99.51%:0,1,85,119
+8	22355696	.	G	A	.	PASS	DP=54;SOMATIC;SS=2;SSC=46;GPV=1E0;SPV=2.2693E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:41:41:0:0%:0,41,0,0	0/1:.:13:5:6:54.55%:0,5,0,6
+13	34837076	.	C	T	.	PASS	DP=289;SS=3;SSC=117;GPV=1E0;SPV=1.5987E-12	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:204:121:83:40.69%:60,61,33,50	1/1:.:85:13:72:84.71%:6,7,29,43
+17	38192137	.	T	G	.	PASS	DP=60;SS=1;SSC=3;GPV=6.9672E-12;SPV=5E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:13:12:48%:4,9,3,9	0/1:.:35:17:18:51.43%:2,15,2,16
+15	92706594	.	T	C	.	PASS	DP=44;SS=1;SSC=7;GPV=2.0219E-8;SPV=1.698E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:12:7:36.84%:1,11,0,7	0/1:.:25:11:14:56%:1,10,2,12
+6	90333058	.	T	A	.	PASS	DP=63;SS=1;SSC=0;GPV=3.2811E-12;SPV=9.7544E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:38:16:22:57.89%:16,0,20,2	0/1:.:25:16:9:36%:16,0,9,0
+2	71906171	.	T	C	.	PASS	DP=218;SS=1;SSC=0;GPV=1.4756E-130;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:134:0:134:100%:0,0,106,28	1/1:.:84:0:84:100%:0,0,71,13
+9	104133628	.	C	T	.	PASS	DP=370;SS=1;SSC=0;GPV=3.7587E-220;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:186:0:184:100%:0,0,64,120	1/1:.:184:0:183:100%:0,0,44,139
+7	130080951	.	C	T	.	PASS	DP=31;SS=1;SSC=0;GPV=1.1154E-7;SPV=8.4624E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:3:6:66.67%:0,3,0,6	0/1:.:22:10:12:54.55%:0,10,0,12
+1	198225658	.	T	C	.	PASS	DP=88;SS=1;SSC=1;GPV=9.7502E-16;SPV=6.3253E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:10:9:47.37%:2,8,0,9	0/1:.:69:37:32:46.38%:4,33,3,29
+1	175116277	.	T	A	.	PASS	DP=270;SS=3;SSC=137;GPV=1E0;SPV=1.8981E-14	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:93:60:33:35.48%:6,54,1,32	0/0:.:177:174:3:1.69%:6,168,0,3
+2	25048847	.	A	G	.	PASS	DP=62;SS=1;SSC=5;GPV=2.4621E-8;SPV=2.5989E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:33:23:10:30.3%:22,1,10,0	0/1:.:29:17:12:41.38%:16,1,12,0
+12	133210985	.	C	T	.	PASS	DP=485;SS=1;SSC=3;GPV=9.0498E-92;SPV=4.8094E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:255:128:127:49.8%:69,59,75,52	0/1:.:230:114:116:50.43%:59,55,61,55
+19	53051838	.	G	A	.	PASS	DP=33;SS=3;SSC=22;GPV=1E0;SPV=5.4227E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:8:5:38.46%:2,6,0,5	0/0:.:20:20:0:0%:6,14,0,0
+7	139219257	.	A	G	.	PASS	DP=112;SS=1;SSC=0;GPV=1.0125E-16;SPV=9.1112E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:48:25:22:46.81%:17,8,17,5	0/1:.:64:41:23:35.94%:24,17,17,6
+1	17083984	.	C	T	.	PASS	DP=426;SS=1;SSC=0;GPV=1.2777E-36;SPV=9.2906E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:193:138:55:28.5%:122,16,55,0	0/1:.:233:180:53:22.75%:160,20,52,1
+15	64017798	.	A	G	.	PASS	DP=186;SS=1;SSC=0;GPV=2.5146E-111;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:105:0:105:100%:0,0,0,105	1/1:.:81:0:81:100%:0,0,0,81
+10	35310678	.	C	T	.	PASS	DP=96;SS=1;SSC=1;GPV=2.6871E-55;SPV=6.875E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:30:0:30:100%:0,0,2,28	1/1:.:66:1:65:98.48%:1,0,7,58
+5	32379210	.	G	A	.	PASS	DP=167;SS=1;SSC=0;GPV=6.55E-100;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:93:0:93:100%:0,0,87,6	1/1:.:74:0:74:100%:0,0,66,8
+2	85543222	.	C	T	.	PASS	DP=40;SS=1;SSC=4;GPV=8.0088E-21;SPV=3.2436E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:17:0:17:100%:0,0,10,7	1/1:.:23:2:21:91.3%:0,2,6,15
+5	38923171	.	T	C	.	PASS	DP=84;SS=1;SSC=0;GPV=6.8219E-46;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:46:0:42:100%:0,0,42,0	1/1:.:38:0:35:100%:0,0,35,0
+7	142471447	.	GC	G	.	PASS	DP=185;SS=1;SSC=7;GPV=5.6778E-16;SPV=1.7448E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:90:70:19:21.35%:2,68,0,19	0/1:.:95:68:27:28.42%:3,65,0,27
+16	70942432	.	G	A	.	PASS	DP=166;SS=1;SSC=12;GPV=7.1209E-30;SPV=6.1715E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:85:50:35:41.18%:21,29,17,18	0/1:.:81:37:44:54.32%:17,20,17,27
+22	26239906	.	A	G	.	PASS	DP=83;SS=1;SSC=6;GPV=2.8834E-22;SPV=2.016E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:60:23:36:61.02%:1,22,8,28	0/1:.:23:6:17:73.91%:0,6,4,13
+16	1717246	.	C	T	.	PASS	DP=39;SS=1;SSC=9;GPV=3.4806E-8;SPV=1.2471E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:22:13:9:40.91%:12,1,9,0	0/1:.:17:6:11:64.71%:6,0,11,0
+Y	13469879	.	C	T	.	PASS	DP=32;SS=3;SSC=15;GPV=1E0;SPV=2.7836E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:14:10:4:28.57%:5,5,2,2	0/0:.:18:18:0:0%:10,8,0,0
+2	182402790	.	G	A	.	PASS	DP=73;SS=1;SSC=2;GPV=8.8799E-8;SPV=5.2978E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:36:26:10:27.78%:26,0,10,0	0/1:.:37:26:11:29.73%:26,0,10,1
+19	11210912	.	C	T	.	PASS	DP=313;SS=1;SSC=7;GPV=2.0575E-63;SPV=1.9879E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:156:78:78:50%:48,30,57,21	0/1:.:157:70:87:55.41%:41,29,52,35
+12	21796814	.	G	A	.	PASS	DP=153;SS=1;SSC=0;GPV=6.7575E-88;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:92:0:91:100%:0,0,91,0	1/1:.:61:0:56:100%:0,0,56,0
+X	19482476	.	C	T	.	PASS	DP=71;SS=1;SSC=0;GPV=2.6835E-42;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:31:0:31:100%:0,0,7,24	1/1:.:40:0:40:100%:0,0,3,37
+1	176200923	.	C	T	.	PASS	DP=24;SS=1;SSC=6;GPV=9.0704E-11;SPV=2.4901E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:2:6:75%:1,1,3,3	1/1:.:16:1:15:93.75%:0,1,7,8
+4	77246835	.	T	C	.	PASS	DP=16;SS=1;SSC=0;GPV=8.837E-3;SPV=9.4056E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:8:4:4:50%:4,0,4,0	0/1:.:8:6:2:25%:6,0,2,0
+12	78570914	.	G	C	.	PASS	DP=1041;SS=1;SSC=31;GPV=1E0;SPV=7.8716E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:621:327:294:47.34%:264,63,234,60	0/1:.:420:178:241:57.52%:139,39,195,46
+10	93427441	.	G	A	.	PASS	DP=47;SS=1;SSC=27;GPV=1E0;SPV=1.6668E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:26:9:17:65.38%:3,6,13,4	0/1:.:21:17:4:19.05%:8,9,3,1
+12	29486323	.	T	C	.	PASS	DP=27;SS=1;SSC=1;GPV=2.1337E-3;SPV=7.0725E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:9:4:30.77%:9,0,4,0	0/1:.:14:10:4:28.57%:10,0,4,0
+7	128807732	.	T	G	.	PASS	DP=41;SS=3;SSC=50;GPV=1E0;SPV=8.5636E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:17:12:5:29.41%:1,11,1,4	1/1:.:24:1:23:95.83%:0,1,1,22
+3	11920325	.	A	C	.	PASS	DP=188;SS=1;SSC=4;GPV=2.9862E-110;SPV=3.5638E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:121:0:121:100%:0,0,50,71	1/1:.:67:1:66:98.51%:0,1,29,37
+19	16860105	.	G	A	.	PASS	DP=180;SS=1;SSC=0;GPV=1.0132E-107;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:109:0:109:100%:0,0,16,93	1/1:.:71:0:71:100%:0,0,7,64
+5	150846663	.	A	G	.	PASS	DP=246;SS=1;SSC=0;GPV=2.1752E-147;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:81:0:81:100%:0,0,81,0	1/1:.:165:0:165:100%:0,0,163,2
+12	55250714	.	G	A	.	PASS	DP=2020;SS=1;SSC=73;GPV=1E0;SPV=4.9382E-8	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:1023:614:404:39.69%:262,352,144,260	0/1:.:997:480:512:51.61%:202,278,200,312
+19	9020211	.	C	T	.	PASS	DP=1746;SS=1;SSC=255;GPV=1E0;SPV=1.9994E-32	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:941:505:435:46.28%:18,487,23,412	0/1:.:805:644:158:19.7%:24,620,11,147
+12	53456701	.	C	A	.	PASS	DP=24;SOMATIC;SS=2;SSC=26;GPV=1E0;SPV=2.2883E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:12:12:0:0%:11,1,0,0	0/1:.:12:5:7:58.33%:0,5,0,7
+2	99811894	.	C	T	.	PASS	DP=115;SS=1;SSC=0;GPV=4.392E-68;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:54:0:54:100%:0,0,54,0	1/1:.:61:0:60:100%:0,0,60,0
+18	59777386	.	A	T	.	PASS	DP=38;SS=1;SSC=7;GPV=2.68E-7;SPV=1.7229E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:21:13:8:38.1%:0,13,0,8	0/1:.:17:7:10:58.82%:0,7,0,10
+7	21775210	.	A	G	.	PASS	DP=20;SS=1;SSC=0;GPV=7.2544E-12;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:12:0:12:100%:0,0,12,0	1/1:.:8:0:8:100%:0,0,8,0
+X	152991417	.	G	T	.	PASS	DP=84;SS=1;SSC=0;GPV=6.8742E-49;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:43:0:42:100%:0,0,2,40	1/1:.:41:0:40:100%:0,0,1,39
+2	37302556	.	GA	G	.	PASS	DP=288;SS=1;SSC=9;GPV=1.3212E-130;SPV=1.1355E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:198:24:174:87.88%:24,0,166,8	1/1:.:90:6:84:93.33%:6,0,78,6
+X	2774478	.	A	G	.	PASS	DP=118;SS=1;SSC=0;GPV=1.7454E-70;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:66:0:66:100%:0,0,66,0	1/1:.:52:0:52:100%:0,0,52,0
+12	11904252	.	A	G	.	PASS	DP=348;SS=1;SSC=4;GPV=1.1143E-61;SPV=3.2516E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:140:76:64:45.71%:75,1,64,0	0/1:.:208:106:101:48.79%:106,0,101,0
+13	24853134	.	T	C	.	PASS	DP=38;SS=1;SSC=2;GPV=6.8754E-17;SPV=5.1613E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:18:1:15:93.75%:0,1,0,15	1/1:.:20:0:15:100%:0,0,0,15
+2	29274625	.	T	A	.	PASS	DP=29;SOMATIC;SS=2;SSC=6;GPV=1E0;SPV=2.0399E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:9:9:0:0%:7,2,0,0	0/1:.:20:16:4:20%:10,6,2,2
+3	58303069	.	C	T	.	PASS	DP=69;SS=1;SSC=1;GPV=1.7341E-18;SPV=7.0802E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:32:11:21:65.62%:11,0,21,0	0/1:.:37:14:23:62.16%:14,0,23,0
+21	9909920	.	A	G	.	PASS	DP=25;SS=1;SSC=3;GPV=1.057E-2;SPV=4.7678E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:16:10:3:23.08%:8,2,2,1	0/1:.:9:6:3:33.33%:6,0,2,1
+18	36285187	.	T	C	.	PASS	DP=18;SS=3;SSC=14;GPV=1E0;SPV=3.1674E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:8:5:3:37.5%:1,4,0,3	1/1:.:10:1:9:90%:0,1,3,6
+1	79214869	.	A	G	.	PASS	DP=55;SS=1;SSC=0;GPV=3.6885E-12;SPV=9.3382E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:27:10:17:62.96%:5,5,12,5	0/1:.:28:15:13:46.43%:10,5,8,5
+1	197482265	.	A	G	.	PASS	DP=43;SS=1;SSC=6;GPV=2.4696E-6;SPV=2.4115E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:29:18:9:33.33%:0,18,1,8	0/1:.:14:7:7:50%:0,7,0,7
+21	15323631	.	C	T	.	PASS	DP=571;SS=1;SSC=2;GPV=8.0051E-113;SPV=5.8032E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:263:125:137:52.29%:9,116,5,132	0/1:.:308:148:159:51.79%:12,136,6,153
+17	17062241	.	C	G	.	PASS	DP=22;SS=1;SSC=11;GPV=3.8368E-8;SPV=6.6986E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:4:5:55.56%:1,3,1,4	1/1:.:13:1:12:92.31%:0,1,2,10
+2	204111398	.	GTTAA	G	.	PASS	DP=50;SS=1;SSC=11;GPV=3.2182E-22;SPV=7.8014E-2	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:24:5:19:79.17%:5,0,19,0	1/1:.:26:1:25:96.15%:1,0,25,0
+11	102818396	.	TTGTG	T	.	PASS	DP=35;SS=1;SSC=4;GPV=1.0644E-3;SPV=3.8981E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:23:17:5:22.73%:17,0,5,0	0/1:.:12:8:4:33.33%:8,0,2,2
+2	92006404	.	T	C	.	PASS	DP=37;SS=1;SSC=0;GPV=4.7404E-4;SPV=8.6788E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:18:12:6:33.33%:0,12,0,6	0/1:.:19:14:4:22.22%:0,14,0,4
+4	100470132	.	T	C	.	PASS	DP=167;SS=3;SSC=45;GPV=1E0;SPV=2.7538E-5	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:115:61:54:46.96%:61,0,54,0	1/1:.:52:10:42:80.77%:10,0,42,0
+11	80364767	.	C	CATT	.	PASS	DP=95;SS=1;SSC=28;GPV=1E0;SPV=1.4371E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:46:18:28:60.87%:5,13,5,23	0/1:.:49:35:14:28.57%:4,31,1,13
+18	56205481	.	G	A	.	PASS	DP=416;SS=1;SSC=2;GPV=2.0986E-246;SPV=5.5422E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:231:1:229:99.57%:0,1,1,228	1/1:.:185:0:185:100%:0,0,0,185
+15	41148163	.	C	T	.	PASS	DP=131;SS=3;SSC=57;GPV=1E0;SPV=1.8296E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:66:40:26:39.39%:22,18,16,10	1/1:.:65:13:52:80%:7,6,27,25
+16	72039605	.	G	T	.	PASS	DP=110;SS=1;SSC=3;GPV=1.9087E-62;SPV=4.3519E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:61:0:61:100%:0,0,23,38	1/1:.:49:1:46:97.87%:1,0,24,22
+3	47305928	.	TTTTTA	T	.	PASS	DP=79;SS=1;SSC=6;GPV=2.1628E-22;SPV=2.1284E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:8:4:4:50%:0,4,0,4	0/1:.:71:20:48:70.59%:0,20,0,48
+1	44386305	.	C	T	.	PASS	DP=99;SS=1;SSC=1;GPV=1.4447E-17;SPV=7.2601E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:56:29:27:48.21%:12,17,7,20	0/1:.:43:24:19:44.19%:10,14,7,12
+17	26687901	.	C	CA	.	PASS	DP=27;SOMATIC;SS=2;SSC=10;GPV=1E0;SPV=9.7778E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:14:14:0:0%:0,14,0,0	0/1:.:13:10:3:23.08%:1,9,0,3
+16	5133606	.	G	T	.	PASS	DP=77;SS=1;SSC=0;GPV=6.8219E-46;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:37:0:37:100%:0,0,37,0	1/1:.:40:0:40:100%:0,0,40,0
+7	97991792	.	A	G	.	PASS	DP=381;SS=1;SSC=51;GPV=1E0;SPV=7.724E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:134:68:66:49.25%:6,62,8,58	0/1:.:247:68:177:72.24%:1,67,15,162
+10	135160950	.	C	T	.	PASS	DP=57;SS=1;SSC=0;GPV=6.4572E-34;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:37:0:37:100%:0,0,11,26	1/1:.:20:0:20:100%:0,0,5,15
+4	56884079	.	T	C	.	PASS	DP=72;SS=1;SSC=0;GPV=5.3416E-11;SPV=8.7619E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:40:22:18:45%:0,22,0,18	0/1:.:32:21:11:34.38%:0,21,0,11
+12	102190521	.	C	T	.	PASS	DP=757;SS=1;SSC=15;GPV=1E0;SPV=2.9347E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:386:184:200:52.08%:69,115,68,132	0/1:.:371:151:219:59.19%:66,85,84,135
+10	42398525	.	C	T	.	PASS	DP=27;SS=1;SSC=0;GPV=3.5253E-4;SPV=9.6588E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:9:4:5:55.56%:4,0,5,0	0/1:.:18:13:5:27.78%:12,1,5,0
+5	70922616	.	G	A	.	PASS	DP=67;SS=1;SSC=0;GPV=6.6743E-40;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:23:0:23:100%:0,0,0,23	1/1:.:44:0:44:100%:0,0,4,40
+17	10548184	.	T	C	.	PASS	DP=32;SS=1;SSC=0;GPV=5.4567E-19;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:19:0:19:100%:0,0,0,19	1/1:.:13:0:13:100%:0,0,0,13
+7	127891884	.	A	C	.	PASS	DP=26;SOMATIC;SS=2;SSC=18;GPV=1E0;SPV=1.5561E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:9:9:0:0%:9,0,0,0	0/1:.:17:9:8:47.06%:9,0,8,0
+3	129814847	.	CG	C	.	PASS	DP=28;SS=1;SSC=11;GPV=3.9563E-9;SPV=6.6667E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:13:6:7:53.85%:6,0,7,0	1/1:.:15:2:13:86.67%:2,0,13,0
+12	47173830	.	G	A	.	PASS	DP=469;SS=1;SSC=0;GPV=1.6525E-281;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:221:0:221:100%:0,0,29,192	1/1:.:248:0:248:100%:0,0,41,207
+16	8736246	.	G	A	.	PASS	DP=553;SS=1;SSC=0;GPV=0E0;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:261:0:261:100%:0,0,256,5	1/1:.:292:0:291:100%:0,0,284,7
+15	92824868	.	T	C	.	PASS	DP=352;SS=1;SSC=0;GPV=3.9526E-211;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:160:0:160:100%:0,0,94,66	1/1:.:192:0:192:100%:0,0,97,95
+9	11012072	.	C	T	.	PASS	DP=41;SS=1;SSC=0;GPV=2.3541E-24;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:27:0:27:100%:0,0,14,13	1/1:.:14:0:14:100%:0,0,4,10
+2	29380393	.	C	G	.	PASS	DP=28;SS=1;SSC=0;GPV=5.1363E-16;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:13:0:13:100%:0,0,0,13	1/1:.:15:0:14:100%:0,0,0,14
+22	30688659	.	C	T	.	PASS	DP=283;SS=1;SSC=5;GPV=4.8902E-49;SPV=2.5301E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:139:76:62:44.93%:10,66,2,60	0/1:.:144:70:69:49.64%:7,63,11,58
+12	76451973	.	A	T	.	PASS	DP=90;SS=1;SSC=0;GPV=4.3706E-53;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:37:0:37:100%:0,0,1,36	1/1:.:53:0:52:100%:0,0,3,49
+11	75501852	.	A	G	.	PASS	DP=93;SS=1;SSC=0;GPV=1.7451E-55;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:48:0:48:100%:0,0,0,48	1/1:.:45:0:45:100%:0,0,0,45
+13	95860214	.	C	T	.	PASS	DP=303;SS=1;SSC=0;GPV=1.0297E-43;SPV=9.8948E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:137:73:64:46.72%:23,50,12,52	0/1:.:166:109:57:34.34%:40,69,14,43
+1	165513463	.	C	G	.	PASS	DP=79;SS=1;SSC=3;GPV=5.3211E-44;SPV=4.1558E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:47:0:45:100%:0,0,45,0	1/1:.:32:1:31:96.88%:1,0,30,1
+9	88296397	.	G	A	.	PASS	DP=28;SS=3;SSC=24;GPV=1E0;SPV=3.5197E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:11:8:42.11%:0,11,0,8	1/1:.:9:0:9:100%:0,0,0,9
+3	111799845	.	A	T	.	PASS	DP=411;SS=1;SSC=0;GPV=5.1346E-246;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:241:0:240:100%:0,0,79,161	1/1:.:170:0:170:100%:0,0,71,99
+3	154018887	.	G	C	.	PASS	DP=374;SS=1;SSC=0;GPV=4.0317E-65;SPV=9.7446E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:199:97:102:51.26%:14,83,22,80	0/1:.:175:102:73:41.71%:23,79,14,59
+6	43021976	.	CG	C	.	PASS	DP=65;SS=1;SSC=1;GPV=1.5858E-7;SPV=7.6362E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:46:30:15:33.33%:30,0,15,0	0/1:.:19:13:5:27.78%:13,0,5,0
+9	120475602	.	C	T	.	PASS	DP=290;SS=1;SSC=11;GPV=1.771E-56;SPV=6.6552E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:155:82:72:46.75%:48,34,43,29	0/1:.:135:59:76:56.3%:25,34,42,34
+4	107956446	.	A	G	.	PASS	DP=34;SS=1;SSC=11;GPV=4.6376E-7;SPV=7.1227E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:25:14:10:41.67%:14,0,10,0	1/1:.:9:2:7:77.78%:2,0,7,0
+6	25701691	.	C	G	.	PASS	DP=111;SS=1;SSC=0;GPV=2.7737E-66;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:61:0:61:100%:0,0,0,61	1/1:.:50:0:50:100%:0,0,0,50
+6	32441422	.	T	C	.	PASS	DP=19;SS=1;SSC=0;GPV=2.5053E-7;SPV=9.1486E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:8:1:7:87.5%:0,1,0,7	0/1:.:11:3:8:72.73%:0,3,0,8
+2	153004967	.	T	C	.	PASS	DP=26;SS=1;SSC=7;GPV=3.3576E-4;SPV=1.8417E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:12:9:3:25%:0,9,0,3	0/1:.:14:7:7:50%:0,7,0,7
+15	67547301	.	C	A	.	PASS	DP=37;SS=1;SSC=3;GPV=3.2589E-5;SPV=4.4678E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:24:16:8:33.33%:4,12,4,4	0/1:.:13:7:5:41.67%:2,5,1,4
+1	75037845	.	A	G	.	PASS	DP=1447;SS=1;SSC=1;GPV=7.0584E-227;SPV=7.2373E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:1031:577:450:43.82%:186,391,155,295	0/1:.:416:239:175:42.27%:106,133,76,99
+6	35960390	.	C	T	.	PASS	DP=552;SS=1;SSC=4;GPV=9.5545E-75;SPV=3.3744E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:239:150:88:36.97%:72,78,45,43	0/1:.:313:190:122:39.1%:111,79,61,61
+7	150490431	.	C	G	.	PASS	DP=145;SS=3;SSC=54;GPV=1E0;SPV=3.2542E-6	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:72:38:34:47.22%:14,24,3,31	0/0:.:73:64:9:12.33%:12,52,4,5
+14	94423294	.	T	C	.	PASS	DP=129;SS=1;SSC=2;GPV=5.6558E-75;SPV=5.4264E-1	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:70:1:69:98.57%:0,1,10,59	1/1:.:59:0:59:100%:0,0,9,50
+6	41905174	.	T	A	.	PASS	DP=112;SS=1;SSC=0;GPV=1.1045E-65;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:57:0:55:100%:0,0,0,55	1/1:.:55:0:55:100%:0,0,0,55
+1	179632347	.	A	C	.	PASS	DP=42;SS=1;SSC=0;GPV=1.5244E-9;SPV=9.6437E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:19:6:13:68.42%:6,0,13,0	0/1:.:23:12:10:45.45%:12,0,10,0
+5	140183058	.	G	A	.	PASS	DP=651;SS=1;SSC=12;GPV=0E0;SPV=6.1533E-2	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:325:0:323:100%:0,0,121,202	1/1:.:326:4:318:98.76%:4,0,128,190
+18	18519038	.	T	C	.	PASS	DP=63;SS=1;SSC=26;GPV=1E0;SPV=2.0156E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:40:16:23:58.97%:10,6,7,16	0/1:.:23:18:4:18.18%:10,8,1,3
+10	75095349	.	G	A	.	PASS	DP=20;SS=3;SSC=20;GPV=1E0;SPV=9.1688E-3	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:11:3:8:72.73%:0,3,0,8	0/0:.:9:8:1:11.11%:0,8,0,1
+3	132063914	.	A	T	.	PASS	DP=317;SS=1;SSC=4;GPV=2.9574E-69;SPV=3.4513E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:111:51:60:54.05%:4,47,2,58	0/1:.:206:88:117:57.07%:5,83,11,106
+19	33135458	.	C	T	.	PASS	DP=124;SS=1;SSC=33;GPV=1E0;SPV=4.9856E-4	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:62:36:26:41.94%:0,36,0,26	0/1:.:62:17:45:72.58%:0,17,1,44
+15	78403732	.	G	T	.	PASS	DP=23;SOMATIC;SS=2;SSC=8;GPV=1E0;SPV=1.4229E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/0:.:14:14:0:0%:0,14,0,0	0/1:.:9:7:2:22.22%:0,7,0,2
+2	87408281	.	T	G	.	PASS	DP=52;SS=3;SSC=13;GPV=1E0;SPV=4.5662E-2	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:10:3:7:70%:1,2,4,3	1/1:.:42:2:39:95.12%:0,2,18,21
+1	28209366	.	A	G	.	PASS	DP=572;SS=1;SSC=6;GPV=1.1576E-74;SPV=2.2811E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:317:204:112:35.44%:90,114,43,69	0/1:.:255:156:99:38.82%:71,85,41,58
+19	44501627	.	T	C	.	PASS	DP=527;SS=1;SSC=1;GPV=2.8758E-91;SPV=6.689E-1	GT:GQ:DP:RD:AD:FREQ:DP4	0/1:.:263:138:125:47.53%:4,134,1,124	0/1:.:264:142:121:46.01%:7,135,4,117
+15	90768156	.	A	G	.	PASS	DP=122;SS=1;SSC=0;GPV=6.9324E-73;SPV=1E0	GT:GQ:DP:RD:AD:FREQ:DP4	1/1:.:58:0:58:100%:0,0,56,2	1/1:.:64:0:64:100%:0,0,61,3