genpat-dashboard

GenPat-Dashboard web application (still under development)

Install

This is a pure javascript client application, easy to install and deploy in your own environment. Follow these steps:

Clone the repo in your local working directory
```
git clone https://github.com/genpat-it/genpat-dashboard.git
```
alternativelly, you can simply download the repo as a zip archive and unzip it
Cd to your working directory and install the packages from the package.json
```
npm install
```
Run the build npm script to consolidate test data
```
npm run build
```

Run the demo

Cd to your working directory and start GenPAT-Dashboard on the development server at localhost:1234
```
npm run start
```
Pass parameters in the query string, for example:
http://localhost:1234/?geo=data/points_listeria.geojson&fasta=data/allineamento_test.fasta&tree=data/tree_listeria.nwk&treetitle=Listeria

Accepted parameters

geo: path to geojson point collection
tree: path to phylogenetic tree in nwk format
treetitle: a name for the tree
fasta: path to fasta file (it will be represented using the integrated MSA viewer)
meta: path to metadata table in json format