CHANGELOG.md

1.2.1 (Thu Apr 04 2024)

🐛 Bug Fix

• Fix PGAN notebook #319 (@satra @pre-commit-ci[bot])
• fix dependencies #318 (@satra)
• Update setup.cfg to add cuda option #309 (@satra)
• [pre-commit.ci] pre-commit autoupdate #294 (@pre-commit-ci[bot] @satra @hvgazula)

Authors: 3

• @pre-commit-ci[bot]
• H Gazula (@hvgazula)
• Satrajit Ghosh (@satra)

---

1.2.0 (Fri Mar 22 2024)

🚀 Enhancement

• Dev #295 (@hvgazula @pre-commit-ci[bot] @satra)
• Update setup.cfg #299 (@satra)

🐛 Bug Fix

• Update release.yml (@satra)
• change hyphenation #275 (@satra)
• update precommit checks #275 (@satra)
• fix docker syntax #275 (@satra)
• remove trained models #275 (@satra)
• [pre-commit.ci] pre-commit autoupdate #269 (@pre-commit-ci[bot])

Authors: 3

• @pre-commit-ci[bot]
• H Gazula (@hvgazula)
• Satrajit Ghosh (@satra)

---

1.1.1 (Sat Oct 07 2023)

🐛 Bug Fix

• Small changes to support long, preemptable training runs #267 (@ohinds @satra)
• [pre-commit.ci] pre-commit autoupdate #268 (@pre-commit-ci[bot])

Authors: 3

• @ohinds
• @pre-commit-ci[bot]
• Satrajit Ghosh (@satra)

---

1.1.0 (Tue Sep 19 2023)

🚀 Enhancement

• Changes required to support the warmstart guide notebook #266 (@ohinds @satra @pre-commit-ci[bot])

🐛 Bug Fix

• Fix some typos using codespell #262 (@yarikoptic @satra)
• [pre-commit.ci] pre-commit autoupdate #263 (@pre-commit-ci[bot] @satra)
• Remove unnecessary keepalive runner #265 (@ohinds)
• Dynamically provision self-hosted runner #264 (@ohinds)

Authors: 4

• @ohinds
• @pre-commit-ci[bot]
• Satrajit Ghosh (@satra)
• Yaroslav Halchenko (@yarikoptic)

---

1.0.0 (Thu Aug 31 2023)

💥 Breaking Change

• nobrainer dataset API rework #261 (@ohinds @pre-commit-ci[bot] @satra)

🐛 Bug Fix

• Fix Dockerfiles and add GitHub Actions job #252 (@kabilar @satra)
• Self-hosted runner weekly keepalive #260 (@ohinds)
• [pre-commit.ci] pre-commit autoupdate #253 (@pre-commit-ci[bot] @satra)
• Processing model checkpointing #256 (@ohinds @pre-commit-ci[bot] @satra)
• Verify that the ec2 instance we started is where we are running. #257 (@ohinds)
• Training from warm start with multiple GPUs #251 (@ohinds @pre-commit-ci[bot])

Authors: 4

• @ohinds
• @pre-commit-ci[bot]
• Kabilar Gunalan (@kabilar)
• Satrajit Ghosh (@satra)

---

0.5.0 (Wed Jul 19 2023)

🚀 Enhancement

• Remove guide #243 (@ohinds @satra)

🐛 Bug Fix

• [pre-commit.ci] pre-commit autoupdate #247 (@pre-commit-ci[bot] @satra)
• Fix #246: Transforms now return labels if passed #250 (@ohinds @pre-commit-ci[bot])
• Check out the master branch of the book repo on CI #249 (@ohinds)
• Nobrainer book guide examples run on AWS EC2 as a form of regression testing #248 (@ohinds)
• [pre-commit.ci] pre-commit autoupdate #236 (@pre-commit-ci[bot] @satra)
• Multi-GPU support #242 (@ohinds @pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #234 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #232 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #231 (@pre-commit-ci[bot])

⚠️ Pushed to master

• Update setup.cfg (@satra)
• Update ci.yml (@satra)
• update python and tensorflow versions (@satra)
• [CI] update python and auto versions (@satra)
• replace special branch (@satra)

Authors: 3

• @ohinds
• @pre-commit-ci[bot]
• Satrajit Ghosh (@satra)

---

0.4.0 (Tue Oct 18 2022)

🚀 Enhancement

• update actions #230 (@satra)
• [pre-commit.ci] pre-commit autoupdate #229 (@pre-commit-ci[bot])

🐛 Bug Fix

• Enh/api #228 (@satra @pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #227 (@pre-commit-ci[bot])
• Create unet_lstm.py #207 (@Aakanksha-Rana @pre-commit-ci[bot] @satra @Hoda1394)
• [pre-commit.ci] pre-commit autoupdate #226 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #225 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #224 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #223 (@pre-commit-ci[bot])
• [WIP] Updating and simplifying the end-user API of Nobrainer #215 (@Aakanksha-Rana @Hoda1394 @pre-commit-ci[bot] @satra)
• [pre-commit.ci] pre-commit autoupdate #220 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #218 (@pre-commit-ci[bot])
• Hard-Coded Scaling is removed for ProgressiveGANs, GanTrainer and ProgressiveAE Training and Model files #209 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• generation api #216 (@Hoda1394 @pre-commit-ci[bot])
• [WIP] segmentation api #213 (@Aakanksha-Rana @Hoda1394 @pre-commit-ci[bot])
• file name corrected for bayesian_meshnet.py #211 (@Hoda1394 @satra)
• [pre-commit.ci] pre-commit autoupdate #212 (@pre-commit-ci[bot] @satra)
• Adding vox2vox model #205 (@Aakanksha-Rana @pre-commit-ci[bot] @Hoda1394)
• added tensorflow-addons as install dependency #206 (@Hoda1394)
• Composable Data Augmentations #189 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)

⚠️ Pushed to master

• update dockerfiles (@satra)

Authors: 4

• @pre-commit-ci[bot]
• Aakanksha Rana (@Aakanksha-Rana)
• Hoda Rajaei (@Hoda1394)
• Satrajit Ghosh (@satra)

---

0.3.0 (Tue Jan 11 2022)

🚀 Enhancement

• Update README.md #203 (@satra)

🐛 Bug Fix

• Progressive auto encoder #196 (alice.bizeul@inf.ethz.ch @satra @pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #197 (@pre-commit-ci[bot])

⚠️ Pushed to master

• Update README.md (@satra)

Authors: 3

• @pre-commit-ci[bot]
• Alice Elsa Marie Bizeul (alice.bizeul@inf.ethz.ch)
• Satrajit Ghosh (@satra)

---

0.2.1 (Fri Dec 24 2021)

🐛 Bug Fix

• fix: update docker files and citation pointer #194 (@satra @pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Satrajit Ghosh (@satra)

---

0.2.0 (Fri Dec 24 2021)

🚀 Enhancement

• Update README.md and move transforms #187 (@Hoda1394 @pre-commit-ci[bot] @satra)

🐛 Bug Fix

• Documentation update #184 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• Correction of G_dice and multi_class dice_calculation #164 (@kaczmarj @Aakanksha-Rana @pre-commit-ci[bot] @satra)
• DOC: Update link to CITATION file #190 (@arokem)
• Bayesian: 3D bayes_by_backprop_layer + Distributed Weight Consolidation #185 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• [pre-commit.ci] pre-commit autoupdate #188 (@pre-commit-ci[bot])
• Fix tf & tfp compatibility with python version #186 (@Hoda1394 @satra)
• [pre-commit.ci] pre-commit autoupdate #183 (@pre-commit-ci[bot])
• Added Clipping constraint and KLD loss with CD #180 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• ENH: Allow multichannel input #177 (@richford @satra)
• Add citation #181 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• [pre-commit.ci] pre-commit autoupdate #182 (@pre-commit-ci[bot])
• adding brain siamese network models and test cases #172 (@dhritimandas @pre-commit-ci[bot] @satra)
• Added dcgan architecture with tests #66 (@wazeerzulfikar @pre-commit-ci[bot] @satra)
• BF: Add block_length param to dataset.interleave #175 (@richford @satra)
• Weightnorm feature for Variational layer #166 (@Aakanksha-Rana @pre-commit-ci[bot] @satra)
• [pre-commit.ci] pre-commit autoupdate #179 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #178 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #173 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #170 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #165 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #163 (@pre-commit-ci[bot])
• fix: readme to remove qualified install #162 (@satra @pre-commit-ci[bot])
• fix: remove unnecessary step in release action #158 (@satra)

⚠️ Pushed to master

• Update .zenodo.json (@satra)

Authors: 9

• @pre-commit-ci[bot]
• Aakanksha Rana (@Aakanksha-Rana)
• Adam Richie-Halford (@richford)
• Ariel Rokem (@arokem)
• Dhritiman Das (@dhritimandas)
• Hoda Rajaei (@Hoda1394)
• Jakub Kaczmarzyk (@kaczmarj)
• Satrajit Ghosh (@satra)
• Wazeer Zulfikar (@wazeerzulfikar)

---

0.1.1 (Tue Jun 22 2021)

🐛 Bug Fix

• fix: replace key retrieval and normalizers #157 (@satra)
• fix: separate auto release and publish to pypi #156 (@satra)
• [pre-commit.ci] pre-commit autoupdate #154 (@pre-commit-ci[bot])

⚠️ Pushed to master

• fix: add twine upload to release (@satra)

Authors: 2

• @pre-commit-ci[bot]
• Satrajit Ghosh (@satra)

---

0.1.0 (Sat Jun 19 2021)

🚀 Enhancement

• fix: change nobrainer models repo, readme, and guide notebooks #150 (@satra @pre-commit-ci[bot])
• Enh/docker #148 (@satra)
• fix: Update release.yml to handle branch protection #147 (@satra)

🐛 Bug Fix

• add zenodo file #153 (@satra @pre-commit-ci[bot])
• enh: change standardize in dataset creation to a callable #152 (@satra)
• ENH: Bayesian neural network architectures with training requisites #126 (@Aakanksha-Rana @satra @pre-commit-ci[bot])
• fix: standardize not imported for dataset creation #151 (@satra)
• add estimator prediction function for kwyk model #149 (@Hoda1394 @pre-commit-ci[bot] @satra)
• Fix for the generate cli pytest and generation guide notebook #146 (@wazeerzulfikar)
• Created using Colaboratory #144 (@satra @pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #142 (@pre-commit-ci[bot])
• FIX: keeping compatibility with official tensorflow docker images #141 (@satra)
• Add bayesian prediction #128 (@Hoda1394 @satra @pre-commit-ci[bot])
• ENH: Transform composition #113 (@Aakanksha-Rana @satra @pre-commit-ci[bot])
• fixes #124 #125 (@shashankbansal6 @satra)
• fix: update dockerfiles to tensorflow 2.5.0 #140 (@satra)
• ENH: Add progressive gan to nobrainer #138 (@wazeerzulfikar @satra @djarecka)
• add: release mechanism #139 (@satra)
• Add progressiveGAN for 3D brain MR images #114 (@wazeerzulfikar)
• Enh/notebooks #137 (@satra)
• add CI workflow badge #133 (@kaczmarj)
• move CI to github actions #131 (@Hoda1394)
• Enh/minor updates #123 (@kaczmarj)
• export LC_ALL and LANG + use tensorflow 2.3.1 #118 (@kaczmarj)
• use specific version of cloudpickle to fix import error #108 (@kaczmarj)
• force reinstall of python dependencies in travis ci #102 (@kaczmarj)

⚠️ Pushed to master

• fix: use token for auto with repo access (@satra)
• Created using Colaboratory (@satra)
• Update release.yml (@satra)

Authors: 8

• @Hoda1394
• @pre-commit-ci[bot]
• Aakanksha Rana (@Aakanksha-Rana)
• Dorota Jarecka (@djarecka)
• Jakub Kaczmarzyk (@kaczmarj)
• Satrajit Ghosh (@satra)
• Shashank Bansal (@shashankbansal6)
• Wazeer Zulfikar (@wazeerzulfikar)