From 796f74750b2b3e04e81a54f9b1128afe9afc926b Mon Sep 17 00:00:00 2001 From: Trevor Bedford Date: Fri, 12 Apr 2024 11:30:04 -0700 Subject: [PATCH] Include "strain name" as coloring Strain name is often not included in GenBank or is not very helpful. But still good to surface as metadata for modal. I particularly wanted this for the 1954 Edmonston-related vaccine strains. People know these by their strain names, certainly not their GenBank accessions. --- phylogenetic/defaults/auspice_config.json | 5 +++++ phylogenetic/defaults/auspice_config_N450.json | 7 ++++++- 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/phylogenetic/defaults/auspice_config.json b/phylogenetic/defaults/auspice_config.json index 27f2484..445323c 100644 --- a/phylogenetic/defaults/auspice_config.json +++ b/phylogenetic/defaults/auspice_config.json @@ -25,6 +25,11 @@ "key": "region", "title": "Region", "type": "categorical" + }, + { + "key": "strain", + "title": "Strain name", + "type": "categorical" } ], "geo_resolutions": [ diff --git a/phylogenetic/defaults/auspice_config_N450.json b/phylogenetic/defaults/auspice_config_N450.json index 5193bc0..a644eb2 100644 --- a/phylogenetic/defaults/auspice_config_N450.json +++ b/phylogenetic/defaults/auspice_config_N450.json @@ -25,7 +25,12 @@ "key": "region", "title": "Region", "type": "categorical" - } + }, + { + "key": "strain", + "title": "Strain name", + "type": "categorical" + } ], "geo_resolutions": [ "country",