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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "nhssynth"
version = "0.10.2"
description = "Synthetic data generation pipeline leveraging a Differentially Private Variational Auto Encoder assessed using a variety of metrics"
authors = ["HarrisonWilde <harrisondwilde@outlook.com>"]
maintainers = ["NHSE TDAU <england.tdau@nhs.net>"]
license = "MIT"
readme = ["README.md"]
repository = "https://github.com/nhsengland/NHSSynth"
keywords = ["synthetic data", "privacy", "fairness", "machine learning"]
classifiers = [
"Development Status :: 3 - Alpha"
]
[tool.poetry.urls]
"Bug Tracker" = "https://github.com/nhsengland/NHSSynth/issues"
"Docs" = "https://nhsengland.github.io/NHSSynth"
[tool.poetry.dependencies]
python = ">=3.9, !=3.9.7, <3.12"
pandas = "^2.0.1"
scikit-learn = "^1.2.2"
tqdm = "^4.65.0"
gower = "^0.1.2"
pyyaml = "^6.0"
torch = "^2.1.2"
opacus = "^1.4.0"
networkx = "^3.1"
pyvis = "^0.3.2"
sdmetrics = "^0.11.0"
streamlit = "^1.25.0"
plotly = "^5.16.1"
umap-learn = "^0.5.3"
llvmlite = "^0.40.1"
[tool.poetry.scripts]
nhssynth = "nhssynth.cli.__main__:__main__"
[tool.poetry.group.dev]
optional = true
[tool.poetry.group.dev.dependencies]
pytest = "^7.3.1"
pytest-cov = "^4.0.0"
tox = "^4.0.0"
mock = "^5.1.0"
black = {extras = ["jupyter"], version = "^24.2.0"}
pre-commit = "^3.5.0"
nbstripout = "^0.6.1"
pre-commit-hooks = "^4.5.0"
ruff = "^0.1.0"
[tool.poetry.group.aux]
optional = true
[tool.poetry.group.aux.dependencies]
jupyter = "^1.0.0"
notebook = "^6.5.4"
pycox = "^0.2.3"
gravis = "^0.1.0"
[tool.poetry.group.docs]
optional = true
[tool.poetry.group.docs.dependencies]
mkdocs-material = "^9.1.4"
mkdocs-gen-files = "^0.4.0"
mkdocs-literate-nav = "^0.6.0"
mkdocs-section-index = "^0.3.5"
mkdocs-git-revision-date-localized-plugin = "^1.2.0"
pymdown-extensions = "^10.0.1"
mkdocstrings = {extras = ["python"], version = "^0.26.1"}
[tool.poetry.group.security.dependencies]
pillow = "^10.2.0"
urllib3 = "^2.0.7"
[tool.black]
line-length = 120
[tool.ruff]
include = ["*.py", "*.pyi", "**/pyproject.toml", "*.ipynb"]
select = ["E4", "E7", "E9", "F", "C90", "I"]
[tool.ruff.per-file-ignores]
"src/nhssynth/common/constants.py" = ["F403", "F405"]
[tool.ruff.isort]
known-first-party = ["nhssynth"]
[tool.pytest.ini_options]
testpaths = "tests"
filterwarnings = ["ignore::DeprecationWarning:pkg_resources"]
[tool.coverage.run]
source = ["src/nhssynth/cli", "src/nhssynth/common", "src/nhssynth/modules"]
omit = [
"src/nhssynth/common/debugging.py",
]
[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"