From 14c7c856f8a42fb3af88e3416f754a666ea987e9 Mon Sep 17 00:00:00 2001 From: Niema Moshiri Date: Fri, 17 Nov 2023 18:35:38 -0800 Subject: [PATCH] Updated README --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 942bea0..c034c8e 100644 --- a/README.md +++ b/README.md @@ -28,6 +28,7 @@ ViralMSA also requires at least one of the following tools to perform the alignm * [LRA](https://github.com/ChaissonLab/LRA) * [mm2-fast](https://github.com/bwa-mem2/mm2-fast) * [NGMLR](https://github.com/philres/ngmlr) +* [seq-align](https://github.com/noporpoise/seq-align) * [STAR](https://github.com/alexdobin/STAR) * [Unimap](https://github.com/lh3/unimap) * [wfmash](https://github.com/ekg/wfmash) @@ -112,6 +113,9 @@ Please also cite the read mapper you selected. > Sedlazeck FJ, Rescheneder P, Smolka M, Fang H, Nattestad M, von Haeseler A, Schatz MC (2018). "Accurate detection of complex structural variations using single-molecule sequencing." *Nat Methods*. 15:461-468. [doi:10.1038/s41592-018-0001-7](https://doi.org/10.1038/s41592-018-0001-7) +### seq-align +> Turner I (2015). "seq-align". https://github.com/noporpoise/seq-align + ### STAR > Dobin A, Davis CA, Schlesinger F, Drehkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR (2013). "STAR: ultrafast universal RNA-seq aligner." *Bioinformatics*. 29(1):15-21. [doi:10.1093/bioinformatics/bts635](https://doi.org/10.1093/bioinformatics/bts635)