_quarto.yml

project: 
  type: website

website: 
  page-navigation: true
  title: "NOAA quarto simple" 
  site-url: "https://nmfs-ost.github.io/PAM_template_lab_manual/" 
  repo-url: "https://github.com/nmfs-ost/PAM_template_lab_manual"
  repo-actions: [edit, source, issue]
  favicon: images/favicon.ico
  
  page-footer:
    right: "This page is built with [Quarto](https://quarto.org/)."
    left: "© CC-1.0"
  
  sidebar:
    background: "#D9E3E4"
    logo: "https://upload.wikimedia.org/wikipedia/commons/7/79/NOAA_logo.svg"
    favicon: images/favicon.ico
    pinned: true
    align: center
    tools: 
      - icon: globe
        href: https://nmfs-ost.github.io/PAM_National_NMFS_Network
        text: "NMFS National Passive Acoustic Monitoring Network"
      - icon: github
        href: https://github.com/nmfs-ost/PAM_template_lab_manual
        text: "NMFS PAM SI Lab Manual Template"

    style: "docked"
    search: true
    collapse-level: 1
    contents:
      - href: index.qmd
        text: Home
      - section: content/LabManagement.qmd
        contents: 
          - href: content/Safety.qmd
            text: Safety
          - href: content/Inventory.qmd
            text: Inventory
          - href: content/Hardware.qmd
            text: Hardware
      - href: content/FieldMethods.qmd
        text: "Field Methods"
      - href: content/DataManagement.qmd
        text: Data Management
      - href: content/Hardware.qmd
        text: Hardware
      - section: content/SoftwareAnalysis.qmd
#        text: "Software & Analysis"
        contents: 
          - content/Software.qmd
          - content/AnalysisMethods.qmd
      - href: content/Reporting.qmd
        text: Reporting
      - section: "Optional Pages"
        contents: 
          - content/SharedValues.qmd
          - content/Onboarding.qmd
          - content/Offboarding.qmd
          - content/FieldMethods.qmd
          - content/OpenScience.qmd
          - content/PublicationsPresentations.qmd
          - content/Resources.qmd
      # - section: "NMFS Open Science Directions"  #Removed but did not yet delete
      #   contents:
      #     - content/NMFS_OpenSciDirections/Getting-Started.qmd
      #     - content/NMFS_OpenSciDirections/organize.qmd
      #     - content/NMFS_OpenSciDirections/add-content.qmd
      #     - content/NMFS_OpenSciDirections/rendering.qmd
      #     - content/NMFS_OpenSciDirections/rmarkdown.Rmd
      #     - content/NMFS_OpenSciDirections/code.qmd
      #     - content/NMFS_OpenSciDirections/acknowledgements.qmd 
        
format:
  html:
    theme:
      light: [cosmo, theme.scss] 
      dark: [cosmo, theme-dark.scss]
    code-copy: true
    code-overflow: wrap
    toc: true


filters:
  - include-files.lua
  - quarto