Suddenly missing .bin in node_modules with node:22-alpine

[hnykda]

Hi. I suspect this is related to something specific to our configuration, as I don't see anyone else experiencing this. We have a fairly simple dockerfile:

FROM node:22-alpine

RUN mkdir -p /src
WORKDIR /src

RUN apk update && apk add build-base python3

COPY package.json package-lock.json ./
RUN npm ci

COPY next.config.js middleware.ts sentry.client.config.ts sentry.server.config.ts sentry.edge.config.ts tailwind.config.js tsconfig.json webpack.config.js postcss.config.js ./

COPY lib lib
COPY app app
COPY scripts scripts

it worked totally fine, but today it broke: node_modules/.bin is simply missing. It worked fine with node:22-alpine@sha256:ba898e86c2cc720c8cf2ae05f8d2d4697fe0c8ca3e920d6fbf14a6cbf50bb9ca, but node:22-alpine@sha256:f200d5ce9f0c43df6f3a6b97b692f998cce270f1409864de5fbb2e61836121f2 misses node_modules/.bin for whatever reason. That's on an exactly same code without any changes but the base image sha.

Environment

• Platform: any
• Docker Version: 26.1.3
• Node.js Version: 22

Full env

  /usr/bin/docker version
  Client: Docker Engine - Community
   Version:           26.1.3
   API version:       1.45
   Go version:        go1.21.10
   Git commit:        b72abbb
   Built:             Thu May 16 08:33:29 2024
   OS/Arch:           linux/amd64
   Context:           default
  
  Server: Docker Engine - Community
   Engine:
    Version:          26.1.3
    API version:      1.45 (minimum version 1.24)
    Go version:       go1.21.10
    Git commit:       8e96db1
    Built:            Thu May 16 08:33:29 2024
    OS/Arch:          linux/amd64
    Experimental:     false
   containerd:
    Version:          1.7.18
    GitCommit:        ae71819c4f5e67bb4d5ae76a6b735f29cc25774e
   runc:
    Version:          1.7.18
    GitCommit:        v1.1.13-0-g58aa920
   docker-init:
    Version:          0.19.0
    GitCommit:        de40ad0
  /usr/bin/docker info
  Client: Docker Engine - Community
   Version:    26.1.3
   Context:    default
   Debug Mode: false
   Plugins:
    buildx: Docker Buildx (Docker Inc.)
      Version:  v0.16.0
      Path:     /usr/libexec/docker/cli-plugins/docker-buildx
    compose: Docker Compose (Docker Inc.)
      Version:  v2.27.1
      Path:     /usr/libexec/docker/cli-plugins/docker-compose
  
  Server:
   Containers: 1
    Running: 1
    Paused: 0
    Stopped: 0
   Images: 15
   Server Version: 26.1.3
   Storage Driver: overlay2
    Backing Filesystem: extfs
    Supports d_type: true
    Using metacopy: false
    Native Overlay Diff: false
    userxattr: false
   Logging Driver: json-file
   Cgroup Driver: cgroupfs
   Cgroup Version: 2
   Plugins:
    Volume: local
    Network: bridge host ipvlan macvlan null overlay
    Log: awslogs fluentd gcplogs gelf journald json-file local splunk syslog
   Swarm: inactive
   Runtimes: io.containerd.runc.v2 runc
   Default Runtime: runc
   Init Binary: docker-init
   containerd version: ae71819c4f5e67bb4d5ae76a6b735f29cc25774e
   runc version: v1.1.13-0-g58aa920
   init version: de40ad0
   Security Options:
    apparmor
    seccomp
     Profile: builtin
    cgroupns
   Kernel Version: 6.5.0-1023-azure
   Operating System: Ubuntu 22.04.4 LTS
   OSType: linux
   Architecture: x86_64
   CPUs: 2
   Total Memory: 7.744GiB
   Name: fv-az1094-897
   ID: 70b54bab-f7c4-4333-a94b-def3ee959db6
   Docker Root Dir: /var/lib/docker
   Debug Mode: false
   Username: githubactions
   Experimental: false
   Insecure Registries:
    127.0.0.0/8

Working

 => [internal] load build definition from Dockerfile                                                                            0.0s  => => transferring dockerfile: 485B                                                                                            0.0s
 => [internal] load metadata for docker.io/library/node:22-alpine@sha256:ba898e86c2cc720c8cf2ae05f8d2d4697fe0c8ca3e920d6fbf14a  1.4s  => [internal] load .dockerignore                                                                                               0.0s
 => => transferring context: 342B                                                                                               0.0s  => [ 1/10] FROM docker.io/library/node:22-alpine@sha256:ba898e86c2cc720c8cf2ae05f8d2d4697fe0c8ca3e920d6fbf14a6cbf50bb9ca       5.1s
 => => resolve docker.io/library/node:22-alpine@sha256:ba898e86c2cc720c8cf2ae05f8d2d4697fe0c8ca3e920d6fbf14a6cbf50bb9ca         0.0s  => => sha256:5155adf0195a7bd447a0b0c6317a4d14d274f28339aef1fe7070c9c4b0e553ff 446B / 446B                                      0.7s
 => => sha256:ef51b21b47ac934c71cdecda24bc8b0da212f4d4629559b5e9accff9c062b8d5 1.39MB / 1.39MB                                  0.3sj => => sha256:6499a07b73018333b7e256641e56a3945ea23ceb0182601231c6b9f998270522 47.14MB / 47.14MB                                3.6s
 => => extracting sha256:6499a07b73018333b7e256641e56a3945ea23ceb0182601231c6b9f998270522                                       1.4s  => => extracting sha256:ef51b21b47ac934c71cdecda24bc8b0da212f4d4629559b5e9accff9c062b8d5                                       0.0s
 => => extracting sha256:5155adf0195a7bd447a0b0c6317a4d14d274f28339aef1fe7070c9c4b0e553ff                                       0.0s  => [internal] load build context                                                                                               0.0s
 => => transferring context: 40.40kB                                                                                            0.0s  => [ 2/10] RUN mkdir -p /src                                                                                                   1.4s
 => [ 3/10] WORKDIR /src                                                                                                        0.0s  => [ 4/10] RUN apk update && apk add build-base python3                                                                        8.0s
 => [ 5/10] COPY package.json package-lock.json ./                                                                              0.1s  => [ 6/10] RUN npm ci                                                                                                         94.6s
 => [ 7/10] COPY next.config.js middleware.ts sentry.client.config.ts sentry.server.config.ts sentry.edge.config.ts tailwind.c  1.9s  => [ 8/10] COPY lib lib                                                                                                        0.1s
 => [ 9/10] COPY app app                                                                                                        0.1s  => [10/10] COPY scripts scripts                                                                                                0.0s
 => exporting to image                                                                                                        667.6s  => => exporting layers                                                                                                       473.5s
 => => exporting manifest sha256:035a3e59f9af142aa21d3ffcd512eb1f53f9b381e014af7887ddeda336c5d10c                               0.0s  => => exporting config sha256:25725e0767af39908244a58ae4cd7f989607e568503393276151d8917057e792                                 0.0s
 => => exporting attestation manifest sha256:401de4ce7562c4e43880e8a4f09ce5c00d0933d0c127fc5e1dd3561e7aebe95e                   0.0s  => => exporting manifest list sha256:7bfeec1cfb1275832c0eec8c3675953aece782f70f34b3abb6a1028dfc96471c                          0.0s
 => => naming to docker.io/library/runner-f:latest                                                                              0.1s  => => unpacking to docker.io/library/runner-f:latest                                                                         193.8s

View build details: docker-desktop://dashboard/build/desktop-linux/desktop-linux/k6nw3e1ylukq6cm02nneycf3s
⏎
[I] ❰dan❙~/work/varuna/code/varuna(git✱rename-and-fix-key-error)❱✔≻ docker run --rm -ti --entrypoint sh runner-f
/src # ls ^C

/src # npx tsx
Welcome to Node.js v22.4.1.
Type ".help" for more information.
>
/src #

Not working

[I] ❰dan❙~/work/varuna/code/varuna(git✱rename-and-fix-key-error)❱✔≻ docker buildx build -t runner-f-b .
[+] Building 1.3s (15/15) FINISHED                                                                              docker:desktop-linux
 => [internal] load build definition from Dockerfile                                                                            0.0s
 => => transferring dockerfile: 631B                                                                                            0.0s
 => [internal] load metadata for docker.io/library/node:22-alpine@sha256:f200d5ce9f0c43df6f3a6b97b692f998cce270f1409864de5fbb2  1.0s
 => [internal] load .dockerignore                                                                                               0.0s
 => => transferring context: 342B                                                                                               0.0s
 => [ 1/10] FROM docker.io/library/node:22-alpine@sha256:f200d5ce9f0c43df6f3a6b97b692f998cce270f1409864de5fbb2e61836121f2       0.0s
 => => resolve docker.io/library/node:22-alpine@sha256:f200d5ce9f0c43df6f3a6b97b692f998cce270f1409864de5fbb2e61836121f2         0.0s
 => [internal] load build context                                                                                               0.1s
 => => transferring context: 40.40kB                                                                                            0.0s
 => CACHED [ 2/10] RUN mkdir -p /src                                                                                            0.0s
 => CACHED [ 3/10] WORKDIR /src                                                                                                 0.0s
 => CACHED [ 4/10] RUN apk update && apk add build-base python3                                                                 0.0s
 => CACHED [ 5/10] COPY package.json package-lock.json ./                                                                       0.0s
 => CACHED [ 6/10] RUN npm ci                                                                                                   0.0s
 => CACHED [ 7/10] COPY next.config.js middleware.ts sentry.client.config.ts sentry.server.config.ts sentry.edge.config.ts tai  0.0s
 => CACHED [ 8/10] COPY lib lib                                                                                                 0.0s
 => CACHED [ 9/10] COPY app app                                                                                                 0.0s
 => CACHED [10/10] COPY scripts scripts                                                                                         0.0s
 => exporting to image                                                                                                          0.1s
 => => exporting layers                                                                                                         0.0s
 => => exporting manifest sha256:335a957071c23158c9b9c7188099a7c9cf9034219887a832d968467a5684a49d                               0.0s
 => => exporting config sha256:1018c1e470e59158e93a7c261abdb8191b96e305eebb7282ee7360a428b14a97                                 0.0s
 => => exporting attestation manifest sha256:54526634cce50130e640bb0dffef48399229ad33518e1eebfa9d2ec08fb8c99a                   0.0s
 => => exporting manifest list sha256:4bde5b80ab32a3d4e2cbdae08f118c516739b308fd40660560f0caaab29ef9b2                          0.0s
 => => naming to docker.io/library/runner-f-b:latest                                                                            0.0s
 => => unpacking to docker.io/library/runner-f-b:latest                                                                         0.0s

View build details: docker-desktop://dashboard/build/desktop-linux/desktop-linux/k9tgp1pe38q27jib44wrjq4x7
[I] ❰dan❙~/work/varuna/code/varuna(git✱rename-and-fix-key-error)❱✔≻ docker run --rm -ti --entrypoint sh runner-f-b
/src # npx tsx
sh: tsx: not found
/src # ls node_modules/.bin
ls: node_modules/.bin: No such file or directory

Expected Behavior

.bin being present in node_modules

Current Behavior

.bin is missing

Steps to Reproduce

Sorry, can't share the full code.

[SimenB]

Presumably fixed, ref https://x.com/nodejs/status/1814323839708656060

(Note that you'll need to wait for #2122 (comment))

If not, we'll need a reproduction.