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SConscript
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#!/usr/bin/env python3
# **************************************************************************
# *
# * Authors: Carlos Oscar Sorzano (coss@cnb.csic.es)
# *
# * Unidad de Bioinformatica of Centro Nacional de Biotecnologia, CSIC
# *
# * This program is free software; you can redistribute it and/or modify
# * it under the terms of the GNU General Public License as published by
# * the Free Software Foundation; either version 2 of the License, or
# * (at your option) any later version.
# *
# * This program is distributed in the hope that it will be useful,
# * but WITHOUT ANY WARRANTY; without even the implied warranty of
# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# * GNU General Public License for more details.
# *
# * You should have received a copy of the GNU General Public License
# * along with this program; if not, write to the Free Software
# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
# * 02111-1307 USA
# *
# * All comments concerning this program package may be sent to the
# * e-mail address 'ifoche@cnb.csic.es'
# *
# **************************************************************************
import os
from os.path import join
from glob import glob
from datetime import datetime
import sysconfig
import sys
PYTHON_LIB = os.environ.get("PYTHON_LIB")
Import('env')
AddOption('--no-opencv', dest='opencv', action='store_false', default=True,
help='Avoid compilation of opencv programs')
AddOption('--no-scipy', dest='scipy', action='store_false', default=True,
help='Avoid compilation with scipy support')
# Define some variables used by Scons. Note that some of
# the variables will be passed by Scipion in the environment (env).
env['CUDA_SDK_PATH'] = os.environ.get('CUDA_SDK_PATH', '')
env['CUDA_LIB_PATH'] = os.environ.get('CUDA_LIB_PATH', '')
get = lambda x: os.environ.get(x, '0').lower() in ['true', 'yes', 'y', '1']
gtest = get('GTEST')
debug = get('DEBUG')
# Read some flags
CYGWIN = env['PLATFORM'] == 'cygwin'
MACOSX = env['PLATFORM'] == 'darwin'
MINGW = env['PLATFORM'] == 'win32'
XMIPP_PATH = Dir('.').abspath
XMIPP_BUNDLE = Dir('..').abspath
# ***********************************************************************
# * Xmipp C++ Libraries *
# ***********************************************************************
# Create a shortcut and customized function
# to add the Xmipp CPP libraries
def addLib(name, **kwargs):
# Install all libraries in scipion/software/lib
# COSS kwargs['installDir'] = '#software/lib'
# Add always the xmipp path as -I for include and also xmipp/libraries
incs = kwargs.get('incs', [])
kwargs['incs'] = incs
deps = kwargs.get('deps', [])
kwargs['deps'] = deps
# Add libraries in libs as deps if not present
libs = kwargs.get('libs', [])
for lib in libs:
deps.append(lib)
# If pattern not provided use *.cpp as default
patterns = kwargs.get('patterns', '*.cpp')
kwargs['patterns'] = patterns
lib = env.AddCppLibrary(name, **kwargs)
env.Alias('xmipp-libs', lib)
return lib
# Gtest
#addLib('XmippGtest',
# dirs=['external'],
# patterns=['gtest/*.cc'],
# default=gtest,
# libs=['pthread']
# )
def getHdf5Name(libdirs):
for dir in libdirs:
if os.path.exists(os.path.join(dir.strip(),"libhdf5.so")):
return "hdf5"
elif os.path.exists(os.path.join(dir.strip(),"libhdf5_serial.so")):
return "hdf5_serial"
return "hdf5"
# Data
addLib('XmippCore',
patterns=['*.cpp','*.c','bilib/*.cc','alglib/*.cpp', 'utils/*.cpp'],
dirs=['core'] * 5, # one relative path for each pattern
libs=['fftw3', 'fftw3_threads',
getHdf5Name(env['EXTERNAL_LIBDIRS']),'hdf5_cpp',
'tiff',
'jpeg',
'sqlite3',
'pthread'])
# Python binding
def remove_prefix(text, prefix):
return text[text.startswith(prefix) and len(prefix):]
env['PYTHONINCFLAGS'] = os.environ.get('PYTHONINCFLAGS', '').split()
if len(env["PYTHONINCFLAGS"])>0:
python_incdirs = [remove_prefix(os.path.expandvars(x),"-I") for x in env["PYTHONINCFLAGS"]]
else:
python_incdirs = []
addLib('xmippCore.so',
dirs=['bindings'],
patterns=['python/*.cpp'],
incs=python_incdirs,
libs=[PYTHON_LIB, 'XmippCore'],
prefix='', target='xmippCore')
# ***********************************************************************
# * Xmipp Scripts *
# ***********************************************************************
XmippAlias = env.Alias('xmipp', ['xmipp-libs'])
Return('XmippAlias')