From a4c796fc61754f8cbf019c66701bf1ec23be9948 Mon Sep 17 00:00:00 2001 From: ptrus Date: Fri, 10 Nov 2023 16:19:12 +0100 Subject: [PATCH] rocksdb: use ptcmalloc in dockerfile --- docker/oasis-core-dev/Dockerfile | 22 +++++++++++++++++----- go/storage/mkvs/db/rocksdb/batch.go | 7 ++++--- go/storage/mkvs/db/rocksdb/rocksdb_test.go | 2 ++ 3 files changed, 23 insertions(+), 8 deletions(-) diff --git a/docker/oasis-core-dev/Dockerfile b/docker/oasis-core-dev/Dockerfile index faa9066bcfe..bafa38af070 100644 --- a/docker/oasis-core-dev/Dockerfile +++ b/docker/oasis-core-dev/Dockerfile @@ -36,7 +36,9 @@ RUN apt-get update -qq && apt-get upgrade -qq && apt-get install -qq \ libseccomp-dev \ bubblewrap \ # Compression libs for RocksDB. - libsnappy-dev libbz2-dev liblz4-dev libzstd-dev && \ + libsnappy-dev libbz2-dev liblz4-dev libzstd-dev \ + # tcmalloc for RocksDB. + libgoogle-perftools-dev && \ apt-get autoclean && apt-get autoremove && rm -rf /var/cache/apt/archives/* && \ # for linting Git commits pip install gitlint @@ -85,7 +87,7 @@ RUN wget https://dl.google.com/go/go${GO_VERSION}.linux-amd64.tar.gz && \ go install mvdan.cc/gofumpt@${GOFUMPT_VERSION} && \ go install golang.org/x/tools/cmd/goimports@${GOIMPORTS_VERSION} -# Install jemalloc (used by BadgerDB). +# Install jemalloc for BadgerDB ('je_' API prefix). RUN wget -O jemalloc.tar.bz2 \ https://github.com/jemalloc/jemalloc/releases/download/${JEMALLOC_VERSION}/jemalloc-${JEMALLOC_VERSION}.tar.bz2 && \ # Ensure checksum matches. @@ -101,15 +103,25 @@ RUN wget -O jemalloc.tar.bz2 \ cd .. && rm jemalloc.tar.bz2 && rm -rf jemalloc-${JEMALLOC_VERSION} # Install RocksDB. +# https://github.com/facebook/rocksdb/blob/main/INSTALL.md RUN wget -q https://github.com/facebook/rocksdb/archive/v${ROCKSDB_VERSION}.tar.gz && \ # Ensure checksum matches. echo "${ROCKSDB_CHECKSUM} v${ROCKSDB_VERSION}.tar.gz" | sha256sum -c && \ tar -zxf v${ROCKSDB_VERSION}.tar.gz && \ cd rocksdb-${ROCKSDB_VERSION} && \ - # TODO: clashes with jemalloc used by BadgerDB. + # In production it's recomended to use either tcmalloc or jemalloc instead of ptmalloc: + # https://blog.cloudflare.com/the-effect-of-switching-to-tcmalloc-on-rocksdb-memory-use/ + # However RocksDB jemalloc requirement clashes with BadgerDB (RocksDB requires it without 'je_' prefix). + # Using tcmalloc next to badgerdb's jemalloc also causes problems. Therefore we default to ptmalloc for + # the docker container. If/when RocksDB becomes the prefered database, we should default to building + # BadgerDB without jemalloc and use tcmalloc/jemalloc here. + # + # Disable jemalloc as it is used by default if found on the system. + ROCKSDB_DISABLE_JEMALLOC=1 \ # For 64-bit x86 the `PORTABLE=haswell` is a reasonable compromise, which supports many or most # of the available optimizations while still being compatible with most processors made since - # roughly 2013. https://github.com/facebook/rocksdb/blob/main/INSTALL.md - DEBUG_LEVEL=0 ROCKSDB_DISABLE_JEMALLOC=1 PORTABLE=haswell make -j4 shared_lib && \ + # roughly 2013. + PORTABLE=haswell \ + DEBUG_LEVEL=0 make -j4 shared_lib && \ make install-shared && ldconfig && \ cd .. && rm -rf v${ROCKSDB_VERSION}.tar.gz rocksdb-${ROCKSDB_VERSION} diff --git a/go/storage/mkvs/db/rocksdb/batch.go b/go/storage/mkvs/db/rocksdb/batch.go index b80666c75b4..38582032d90 100644 --- a/go/storage/mkvs/db/rocksdb/batch.go +++ b/go/storage/mkvs/db/rocksdb/batch.go @@ -106,8 +106,9 @@ func (ba *rocksdbBatch) Commit(root node.Root) error { if err != nil { return err } - // Check if oldRootsMeta was updated in this batch. - // TODO: could this be avoided? + + // Check if oldRootsMeta was updated in this batch. Since we don't see the + // batch updates, until the batch is applied. wbIter := ba.bat.NewIterator() for { if !wbIter.Next() { @@ -115,7 +116,7 @@ func (ba *rocksdbBatch) Commit(root node.Root) error { } rec := wbIter.Record() if bytes.Equal(rec.Key, rootsMetadataKeyFmt.Encode(ba.oldRoot.Version)) { - if rec.Type == grocksdb.WriteBatchValueRecord { + if rec.Type == grocksdb.WriteBatchCFValueRecord { if err = cbor.Unmarshal(rec.Value, &oldRootsMeta); err != nil { panic(err) } diff --git a/go/storage/mkvs/db/rocksdb/rocksdb_test.go b/go/storage/mkvs/db/rocksdb/rocksdb_test.go index 567d2f2cdd9..fb87096c043 100644 --- a/go/storage/mkvs/db/rocksdb/rocksdb_test.go +++ b/go/storage/mkvs/db/rocksdb/rocksdb_test.go @@ -121,6 +121,7 @@ func createCheckpoint(ctx context.Context, require *require.Assertions, dir stri nodeKeys[string(it.Key())] = struct{}{} } } + return nil }) } loadNodes(rocksdb.cfIOTree) @@ -148,6 +149,7 @@ func verifyNodes(require *require.Assertions, rocksdb *rocksdbNodeDB, version ui require.Equal(true, ok, "unexpected node in db") delete(notVisited, string(key)) } + return nil }) } checkNodes(rocksdb.cfIOTree)