Motivation for section. What is the background? Why are we doing what we are about to do. What should you take home from this?
Each section should take around 15 minutes. Longer is fine. Participants will try it themselves then we will go over it together. Sections in bold should be given unique names -- the current names are what the subsection is doing
Create directory for section (not a rule, but nice for organization)
mkdir section_name
Run command
Command \
wrapped \
>output.txt
Now view the runtime parameters
Command
!!! question "Question what we did"
* Why did we run with X parameter?
* What does the Y parameter do?
* Did we take any shortcuts?
* Are there other tools that could be used?
* How long is a typical runtime?
!!! into "Understanding"
* Rerun with other parameters (cool, but hard)
* Look at output with bash/python commands (recommended)
* Look at log file
!!!info "Take Home"
What did we just do and how does it apply to our overall goal of making nice assemblies (and using them)?